View Alignment

This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.

Legend
 Query
 Query hiting target  Query hiting target's complemental strand
 Query's complemental strand hiting target  Query's complemental strand hiting target's complemental strand

Alignment Overview

Query: NF4599_high_6 (Length: 246)

Name: NF4599_high_6
Description: NF4599
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)


[»] NF4599_high_6
NF4599_high_6
[»] chr1 (2 HSPs)
chr1 (167-246)||(33406016-33406095)
chr1 (19-137)||(33405890-33406021)


Alignment Details
Target: chr1 (Bit Score: 80; Significance: 1e-37; HSPs: 2)
Name: chr1
Description:

Target: chr1; HSP #1
Raw Score: 80; E-Value: 1e-37
Query Start/End: Original strand, 167 - 246
Target Start/End: Original strand, 33406016 - 33406095
Alignment:
Q  167 cctaggttatagactcatcttaacatagagagccggctacatattagacaaatcccatgaatatacgccaaaactatact 246  Q
    ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  33406016 cctaggttatagactcatcttaacatagagagccggctacatattagacaaatcccatgaatatacgccaaaactatact 33406095  T

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Target: chr1; HSP #2
Raw Score: 75; E-Value: 1e-34
Query Start/End: Original strand, 19 - 137
Target Start/End: Original strand, 33405890 - 33406021
Alignment:
Q  19 aacgcggcaaagaagttataccaaaagaaattaaacaacctcctca-------tgaaaacaacataagcagaaagtgtaaccaaat------caattaaa 105  Q
    ||||||||||||||||||||||||||||||||||||||||||||||       |||||||||||||||||||||||||||||||||      ||||||||    
T  33405890 aacgcggcaaagaagttataccaaaagaaattaaacaacctcctcatgaaaattgaaaacaacataagcagaaagtgtaaccaaatcaattacaattaaa 33405989  T
Q  106 tgaaagtaaataaaaatattccttaacctagg 137  Q
    || |||||||||||||||||||| ||||||||    
T  33405990 tggaagtaaataaaaatattcctcaacctagg 33406021  T

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