View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
|
Alignment Overview
Query: NF4599_high_7 (Length: 231)
Name: NF4599_high_7
Description: NF4599
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF4599_high_7 |
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Alignment Details
Target: chr5 (Bit Score: 117; Significance: 9e-60; HSPs: 13)
Name: chr5
Description:
Target: chr5; HSP #1
Raw Score: 117; E-Value: 9e-60
Query Start/End: Original strand, 85 - 213
Target Start/End: Original strand, 29949321 - 29949449
Alignment:
| Q |
85 |
gccaccaggtccaccaacactaccaataataggaaaccttcacatattaggcaaacttccacatagaacacttcaatcactctccaaaaaatatggtcca |
184 |
Q |
| |
|
|||||||||||||||||||||||||||||| |||||||||||| ||||||| |||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
29949321 |
gccaccaggtccaccaacactaccaataattggaaaccttcacctattaggtaaacttccacatagaacacttcaatcactctccaaaaaatatggtcca |
29949420 |
T |
|
| Q |
185 |
atcatgtccttacaacttggtcaagttcc |
213 |
Q |
| |
|
||||||||||||||||||||||||||||| |
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|
| T |
29949421 |
atcatgtccttacaacttggtcaagttcc |
29949449 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr5; HSP #2
Raw Score: 117; E-Value: 9e-60
Query Start/End: Original strand, 85 - 213
Target Start/End: Original strand, 29999188 - 29999316
Alignment:
| Q |
85 |
gccaccaggtccaccaacactaccaataataggaaaccttcacatattaggcaaacttccacatagaacacttcaatcactctccaaaaaatatggtcca |
184 |
Q |
| |
|
||||||||||||||||||||||||||||||||||||||||||||| ||||| ||||||||||||||||||||||||||||||||||||| |||||||||| |
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| T |
29999188 |
gccaccaggtccaccaacactaccaataataggaaaccttcacatgttaggtaaacttccacatagaacacttcaatcactctccaaaagatatggtcca |
29999287 |
T |
|
| Q |
185 |
atcatgtccttacaacttggtcaagttcc |
213 |
Q |
| |
|
||||||||||||||||||||||||||||| |
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|
| T |
29999288 |
atcatgtccttacaacttggtcaagttcc |
29999316 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr5; HSP #3
Raw Score: 116; E-Value: 4e-59
Query Start/End: Original strand, 86 - 213
Target Start/End: Original strand, 30005627 - 30005754
Alignment:
| Q |
86 |
ccaccaggtccaccaacactaccaataataggaaaccttcacatattaggcaaacttccacatagaacacttcaatcactctccaaaaaatatggtccaa |
185 |
Q |
| |
|
|||||||||||| |||||||||||||||| ||||| |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
30005627 |
ccaccaggtccatcaacactaccaataattggaaatcttcacatattaggcaaacttccacatagaacacttcaatcactctccaaaaaatatggtccaa |
30005726 |
T |
|
| Q |
186 |
tcatgtccttacaacttggtcaagttcc |
213 |
Q |
| |
|
|||||||||||||||||||||||||||| |
|
|
| T |
30005727 |
tcatgtccttacaacttggtcaagttcc |
30005754 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr5; HSP #4
Raw Score: 116; E-Value: 4e-59
Query Start/End: Original strand, 86 - 213
Target Start/End: Complemental strand, 30071357 - 30071230
Alignment:
| Q |
86 |
ccaccaggtccaccaacactaccaataataggaaaccttcacatattaggcaaacttccacatagaacacttcaatcactctccaaaaaatatggtccaa |
185 |
Q |
| |
|
||||||||||||||| ||||||||||||| ||||| |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
30071357 |
ccaccaggtccaccatcactaccaataattggaaatcttcacatattaggcaaacttccacatagaacacttcaatcactctccaaaaaatatggtccaa |
30071258 |
T |
|
| Q |
186 |
tcatgtccttacaacttggtcaagttcc |
213 |
Q |
| |
|
|||||||||||||||||||||||||||| |
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|
| T |
30071257 |
tcatgtccttacaacttggtcaagttcc |
30071230 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr5; HSP #5
Raw Score: 112; E-Value: 9e-57
Query Start/End: Original strand, 86 - 213
Target Start/End: Original strand, 29962880 - 29963007
Alignment:
| Q |
86 |
ccaccaggtccaccaacactaccaataataggaaaccttcacatattaggcaaacttccacatagaacacttcaatcactctccaaaaaatatggtccaa |
185 |
Q |
| |
|
|||||||||||||||||||||||||||||||||||||||||||| ||||| ||||||||||||||||||||||||||||| ||||||||||||||| ||| |
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|
| T |
29962880 |
ccaccaggtccaccaacactaccaataataggaaaccttcacatgttaggtaaacttccacatagaacacttcaatcactgtccaaaaaatatggttcaa |
29962979 |
T |
|
| Q |
186 |
tcatgtccttacaacttggtcaagttcc |
213 |
Q |
| |
|
|||||||||||||||||||||||||||| |
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|
| T |
29962980 |
tcatgtccttacaacttggtcaagttcc |
29963007 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr5; HSP #6
Raw Score: 112; E-Value: 9e-57
Query Start/End: Original strand, 86 - 213
Target Start/End: Complemental strand, 30011918 - 30011791
Alignment:
| Q |
86 |
ccaccaggtccaccaacactaccaataataggaaaccttcacatattaggcaaacttccacatagaacacttcaatcactctccaaaaaatatggtccaa |
185 |
Q |
| |
|
|||||||||||||||||||||||||||||||||||||||||||| ||||| ||||||||||||||||||||||||||||| ||||||||||||||| ||| |
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|
| T |
30011918 |
ccaccaggtccaccaacactaccaataataggaaaccttcacatgttaggtaaacttccacatagaacacttcaatcactgtccaaaaaatatggttcaa |
30011819 |
T |
|
| Q |
186 |
tcatgtccttacaacttggtcaagttcc |
213 |
Q |
| |
|
|||||||||||||||||||||||||||| |
|
|
| T |
30011818 |
tcatgtccttacaacttggtcaagttcc |
30011791 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr5; HSP #7
Raw Score: 109; E-Value: 6e-55
Query Start/End: Original strand, 86 - 210
Target Start/End: Complemental strand, 30045527 - 30045403
Alignment:
| Q |
86 |
ccaccaggtccaccaacactaccaataataggaaaccttcacatattaggcaaacttccacatagaacacttcaatcactctccaaaaaatatggtccaa |
185 |
Q |
| |
|
|||||||||||||||||||||||||||||||| ||||||||||||||||||| |||||||||||||||||||| ||||||||||||||||||||||||| |
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|
| T |
30045527 |
ccaccaggtccaccaacactaccaataatagggaaccttcacatattaggcacccttccacatagaacacttcagtcactctccaaaaaatatggtccaa |
30045428 |
T |
|
| Q |
186 |
tcatgtccttacaacttggtcaagt |
210 |
Q |
| |
|
||||||||||||||||||||||||| |
|
|
| T |
30045427 |
tcatgtccttacaacttggtcaagt |
30045403 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr5; HSP #8
Raw Score: 108; E-Value: 2e-54
Query Start/End: Original strand, 86 - 213
Target Start/End: Original strand, 29990485 - 29990612
Alignment:
| Q |
86 |
ccaccaggtccaccaacactaccaataataggaaaccttcacatattaggcaaacttccacatagaacacttcaatcactctccaaaaaatatggtccaa |
185 |
Q |
| |
|
|||||| |||||||||||||||||||||||||||| |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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|
| T |
29990485 |
ccaccatgtccaccaacactaccaataataggaaatcttcacatattaggcaaacttccacatagaacacttcaatcactctccaaaaaatatggtccaa |
29990584 |
T |
|
| Q |
186 |
tcatgtccttacaacttggtcaagttcc |
213 |
Q |
| |
|
| ||||| ||||||||||| |||||||| |
|
|
| T |
29990585 |
ttatgtctttacaacttggacaagttcc |
29990612 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr5; HSP #9
Raw Score: 98; E-Value: 2e-48
Query Start/End: Original strand, 85 - 210
Target Start/End: Original strand, 29943653 - 29943778
Alignment:
| Q |
85 |
gccaccaggtccaccaacactaccaataataggaaaccttcacatattaggcaaacttccacatagaacacttcaatcactctccaaaaaatatggtcca |
184 |
Q |
| |
|
|||||||||||||||| ||||||||||||| |||||||| ||||||||||||| ||||||||||||||||||||||||||||||||| ||||||||||| |
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|
| T |
29943653 |
gccaccaggtccaccatcactaccaataatcggaaacctccacatattaggcacccttccacatagaacacttcaatcactctccaaacaatatggtcca |
29943752 |
T |
|
| Q |
185 |
atcatgtccttacaacttggtcaagt |
210 |
Q |
| |
|
||||||||||||||||| |||||||| |
|
|
| T |
29943753 |
atcatgtccttacaactaggtcaagt |
29943778 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr5; HSP #10
Raw Score: 53; E-Value: 1e-21
Query Start/End: Original strand, 1 - 57
Target Start/End: Original strand, 29949237 - 29949293
Alignment:
| Q |
1 |
actttatttccttctcttcactttcacatgctttttattcaaactcttcttacatcc |
57 |
Q |
| |
|
|||||||||||||||||||||||||||||||||||||||||||| |||||||||||| |
|
|
| T |
29949237 |
actttatttccttctcttcactttcacatgctttttattcaaacacttcttacatcc |
29949293 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr5; HSP #11
Raw Score: 41; E-Value: 0.00000000000002
Query Start/End: Original strand, 5 - 57
Target Start/End: Original strand, 29999108 - 29999160
Alignment:
| Q |
5 |
tatttccttctcttcactttcacatgctttttattcaaactcttcttacatcc |
57 |
Q |
| |
|
|||||||||||||||||||||| || | ||||||||||||||||||||||||| |
|
|
| T |
29999108 |
tatttccttctcttcactttcatataccttttattcaaactcttcttacatcc |
29999160 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr5; HSP #12
Raw Score: 33; E-Value: 0.000000001
Query Start/End: Original strand, 7 - 51
Target Start/End: Original strand, 29990406 - 29990450
Alignment:
| Q |
7 |
tttccttctcttcactttcacatgctttttattcaaactcttctt |
51 |
Q |
| |
|
||||||||||||||||||||||| |||| |||||||||| ||||| |
|
|
| T |
29990406 |
tttccttctcttcactttcacatactttctattcaaactattctt |
29990450 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr5; HSP #13
Raw Score: 29; E-Value: 0.0000003
Query Start/End: Original strand, 11 - 55
Target Start/End: Complemental strand, 30045602 - 30045558
Alignment:
| Q |
11 |
cttctcttcactttcacatgctttttattcaaactcttcttacat |
55 |
Q |
| |
|
|||||||||||||||| | |||| |||||||||||||||||||| |
|
|
| T |
30045602 |
cttctcttcactttcatgtactttctattcaaactcttcttacat |
30045558 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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