View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF4599_low_2 (Length: 666)
Name: NF4599_low_2
Description: NF4599
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF4599_low_2 |
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Alignment Details
Target: chr4 (Bit Score: 239; Significance: 1e-132; HSPs: 3)
Name: chr4
Description:
Target: chr4; HSP #1
Raw Score: 239; E-Value: 1e-132
Query Start/End: Original strand, 64 - 341
Target Start/End: Original strand, 1869001 - 1869268
Alignment:
| Q |
64 |
tttgtgcttcatcttgtcacctaacttgaacccaatacttaaaattttgcatataacatatgctccaaaatgttacttcttgcatagtaacaaaaataga |
163 |
Q |
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| T |
1869001 |
tttgtgcttcatcttgtcacctaacttgaacccaatacttaaaattttgcatataacatatgctccaaaatgttacttcttgcatagtaataaaaataga |
1869100 |
T |
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| Q |
164 |
tctacacattaagtaaatgagaatacaactagtagtaactacacttgtttcatacgtaactagcacatgctattgtgtcgatatcaccattctgagagtt |
263 |
Q |
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| T |
1869101 |
tctacacat----------agaatacaactagtagtaactacacttgtttcatacgtaactagcacatgctattgtgtcgatatcaccattctgagagtt |
1869190 |
T |
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| Q |
264 |
ttcactaattcattcactgagatgttgtagccatcacccatctgcattatatatatcatagcaagtcagaatctcatg |
341 |
Q |
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| T |
1869191 |
ttcactaattcattcactgagatgttgtagccatcacccatctgcattatatatatcatagcaagtcagaatctcatg |
1869268 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4; HSP #2
Raw Score: 187; E-Value: 1e-101
Query Start/End: Original strand, 423 - 657
Target Start/End: Original strand, 1869349 - 1869582
Alignment:
| Q |
423 |
ctaaccgtcatactgaaacttatgtgggtttcaccactttacatgaaatacatttctaaattgtagtatccacactaaatttcatgcgataagaaagtga |
522 |
Q |
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| T |
1869349 |
ctaaccgtcatgttgaaacttatgtgggtctcatcactttacgtgggatacatttctaaattatagtatccacactaaatttcatgcgataagaaagtga |
1869448 |
T |
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| Q |
523 |
ctgttagagagtgttaagaaagagagtgtttccgatattcctatataaatagccgttatcaatccgcatatgttttttaaaagaaaaatgagactctttt |
622 |
Q |
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| T |
1869449 |
ctattagagagtgttaagaaagagagtgtttccgatattcctatataaa-agccgttatcaatccgcatatgttttttaaaagaaaaatgagactctttt |
1869547 |
T |
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| Q |
623 |
agagcattatgtaccttacaaatgatgatgatgtc |
657 |
Q |
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| T |
1869548 |
agagcattatgtaccttacaaatgatggtgatgtc |
1869582 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4; HSP #3
Raw Score: 111; E-Value: 1e-55
Query Start/End: Original strand, 196 - 338
Target Start/End: Original strand, 1865056 - 1865198
Alignment:
| Q |
196 |
tagtaactacacttgtttcatacgtaactagcacatgctattgtgtcgatatcaccattctgagagttttcactaattcattcactgagatgttgtagcc |
295 |
Q |
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| T |
1865056 |
tagtaactacacttgtttcatacgtaactagcacatgctattgtctagagatcacctttcttagagttttcactaattcattcactgtgatgttgtagcc |
1865155 |
T |
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| Q |
296 |
atcacccatctgcattatatatatcatagcaagtcagaatctc |
338 |
Q |
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| T |
1865156 |
atcacccatctgcattatatataccatagcaagttagaatctc |
1865198 |
T |
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