View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF4599_low_3 (Length: 493)
Name: NF4599_low_3
Description: NF4599
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF4599_low_3 |
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Alignment Details
Target: chr1 (Bit Score: 470; Significance: 0; HSPs: 5)
Name: chr1
Description:
Target: chr1; HSP #1
Raw Score: 470; E-Value: 0
Query Start/End: Original strand, 3 - 476
Target Start/End: Original strand, 33180086 - 33180559
Alignment:
| Q |
3 |
aaaatatgacaatgttgaatgaatattggaaaattagaggtgattgtatatgattaccctgtaatatttttaactttatataaaggtttggtgcacgttg |
102 |
Q |
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|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
33180086 |
aaaatatgacaatgttgaatgaatattggaaaattagaggtgattgtatatgattaccctgtaatatttttaactttatataaaggtttggtgcacgttg |
33180185 |
T |
|
| Q |
103 |
tatatgaataacggtattgtatgatggtggcagatggcatgcaaggctccaggtgaggaaattgcatacaaaacaacactagcaatcttgaacaagctgt |
202 |
Q |
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|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
33180186 |
tatatgaataacggtattgtatgatggtggcagatggcatgcaaggctccaggtgaggaaattgcatacaaaacaacactagcaatcttgaacaagctgt |
33180285 |
T |
|
| Q |
203 |
caaactattcatgggttgcaaaaggagttctcactctttctgcttttgctcttgaatatggtgacttctggctgctatcacaatatctaccaacagaacc |
302 |
Q |
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|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||||||||||||||| |
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| T |
33180286 |
caaactattcatgggttgcaaaaggagttctcactctttctgcttttgctcttgaatatggtgacttctggctgctatcacagtatctaccaacagaacc |
33180385 |
T |
|
| Q |
303 |
acttgccaaatctttggccataatgaagagagtgcctcaactcaccaaacctgaatcgctcaaaaaacaccgctatgcaattttggaggttaacaatctg |
402 |
Q |
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|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
33180386 |
acttgccaaatctttggccataatgaagagagtgcctcaactcaccaaacctgaatcgctcaaaaaacaccgctatgcaattttggaggttaacaatctg |
33180485 |
T |
|
| Q |
403 |
atcaaagcaacatggcaagtgattgatatcatcattgagttagaaaggctcaactcacgtcacgacatcaagga |
476 |
Q |
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| T |
33180486 |
atcaaagcaacatggcaagtgattgatatcatcattgagttagaaaggctcaactcacgtcacgacatcaagga |
33180559 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr1; HSP #2
Raw Score: 272; E-Value: 1e-152
Query Start/End: Original strand, 89 - 476
Target Start/End: Original strand, 33157357 - 33157744
Alignment:
| Q |
89 |
tttggtgcacgttgtatatgaataacggtattgtatgatggtggcagatggcatgcaaggctccaggtgaggaaattgcatacaaaacaacactagcaat |
188 |
Q |
| |
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|||||||||| ||||||||| ||||||||||||||| ||||| | |||||||||||||||| |||||||||||||||||||||| ||||||||||||||| |
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| T |
33157357 |
tttggtgcacattgtatatggataacggtattgtataatggttgtagatggcatgcaaggccccaggtgaggaaattgcatacagaacaacactagcaat |
33157456 |
T |
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| Q |
189 |
cttgaacaagctgtcaaactattcatgggttgcaaaaggagttctcactctttctgcttttgctcttgaatatggtgacttctggctgctatcacaatat |
288 |
Q |
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| T |
33157457 |
cctgaacaagctgtcaaactactcatgggttgcaaaaggagttctcactctttctgcttttgctcttgagtatggagagttttggctgctatcacagtat |
33157556 |
T |
|
| Q |
289 |
ctaccaacagaaccacttgccaaatctttggccataatgaagagagtgcctcaactcaccaaacctgaatcgctcaaaaaacaccgctatgcaattttgg |
388 |
Q |
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|||||||||||||||||||||||||| || ||||| ||||||||||| |||||||||||||||||||||| |||||||||||||||||||||| |||||| |
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| T |
33157557 |
ctaccaacagaaccacttgccaaatcattagccattatgaagagagtacctcaactcaccaaacctgaattgctcaaaaaacaccgctatgcagttttgg |
33157656 |
T |
|
| Q |
389 |
aggttaacaatctgatcaaagcaacatggcaagtgattgatatcatcattgagttagaaaggctcaactcacgtcacgacatcaagga |
476 |
Q |
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||||||||||||||||||| ||||||| |||| |||||||||||||||||| ||| ||||| |||||||| ||||| || |||||||| |
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| T |
33157657 |
aggttaacaatctgatcaaggcaacatcgcaactgattgatatcatcattgcgttggaaagactcaactcgcgtcatgatatcaagga |
33157744 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr1; HSP #3
Raw Score: 185; E-Value: 1e-100
Query Start/End: Original strand, 118 - 474
Target Start/End: Complemental strand, 33289897 - 33289541
Alignment:
| Q |
118 |
attgtatgatggtggcagatggcatgcaaggctccaggtgaggaaattgcatacaaaacaacactagcaatcttgaacaagctgtcaaactattcatggg |
217 |
Q |
| |
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|||||||| ||| ||||||| ||||||||||||| |||||| ||||||| ||| ||||||||||| ||||| |||| ||||| |||||| ||| ||||| |
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| T |
33289897 |
attgtatgtcggtcgcagatgtcatgcaaggctccgggtgagaaaattgcttacgaaacaacactaacaatcctgaaaaagctctcaaacaatttatggg |
33289798 |
T |
|
| Q |
218 |
ttgcaaaaggagttctcactctttctgcttttgctcttgaatatggtgacttctggctgctatcacaatatctaccaacagaaccacttgccaaatcttt |
317 |
Q |
| |
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||| ||||||||| || |||||||||||||||||| ||||||||||||| |||||| ||||||||| |||||||||||||||||||||||||||| || |
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| T |
33289797 |
ttgaaaaaggagtgctaactctttctgcttttgctattgaatatggtgagttctggaatctatcacaacatctaccaacagaaccacttgccaaatcatt |
33289698 |
T |
|
| Q |
318 |
ggccataatgaagagagtgcctcaactcaccaaacctgaatcgctcaaaaaacaccgctatgcaattttggaggttaacaatctgatcaaagcaacatgg |
417 |
Q |
| |
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||||||||||| ||||||||||||||||||||| ||||| | || |||||||| ||| ||| |||||||||| | |||||| ||||||| ||||||||| |
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| T |
33289697 |
agccataatgaaaagagtgcctcaactcaccaaaactgaagcactgaaaaaacatcgcaatgaaattttggagctcaacaatttgatcaaggcaacatgg |
33289598 |
T |
|
| Q |
418 |
caagtgattgatatcatcattgagttagaaaggctcaactcacgtcacgacatcaag |
474 |
Q |
| |
|
|||||||||| |||||||||||||| ||||| |||||||||| ||| ||||||||| |
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|
| T |
33289597 |
aaagtgattgaaatcatcattgagttggaaagactcaactcacttcatgacatcaag |
33289541 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr1; HSP #4
Raw Score: 167; E-Value: 3e-89
Query Start/End: Original strand, 130 - 476
Target Start/End: Original strand, 33138973 - 33139319
Alignment:
| Q |
130 |
tggcagatggcatgcaaggctccaggtgaggaaattgcatacaaaacaacactagcaatcttgaacaagctgtcaaactattcatgggttgcaaaaggag |
229 |
Q |
| |
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||||||||| ||||||| || |||||||||||||| |||||||||||||||||||||||| | || |||||||||||||||||||||||||||||||||| |
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| T |
33138973 |
tggcagatgtcatgcaaagcaccaggtgaggaaatagcatacaaaacaacactagcaatcctaaaaaagctgtcaaactattcatgggttgcaaaaggag |
33139072 |
T |
|
| Q |
230 |
ttctcactctttctgcttttgctcttgaatatggtgacttctggctgctatcacaatatctaccaacagaaccacttgccaaatctttggccataatgaa |
329 |
Q |
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| || ||||||||||||||| | ||||| ||||| || ||||||||| ||||||| |||||||||||||||||||||||||||| | | |||||| || |
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| T |
33139073 |
tgcttactctttctgctttttcccttgagtatggagagttctggctgttatcacagaatctaccaacagaaccacttgccaaatcactaggcataatcaa |
33139172 |
T |
|
| Q |
330 |
gagagtgcctcaactcaccaaacctgaatcgctcaaaaaacaccgctatgcaattttggaggttaacaatctgatcaaagcaacatggcaagtgattgat |
429 |
Q |
| |
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|||||| |||||||| | || || ||| | | |||||||| ||| ||| |||||||||| | |||||| ||||||| |||||||||||||| ||||| |
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| T |
33139173 |
gagagttcctcaactttcaaagccggaagcattgaaaaaacatcgcaatgaaattttggagctcaacaatttgatcaaggcaacatggcaagtcattgaa |
33139272 |
T |
|
| Q |
430 |
atcatcattgagttagaaaggctcaactcacgtcacgacatcaagga |
476 |
Q |
| |
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|||||||||||||| ||||| |||||||| ||||| ||||||||||| |
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| T |
33139273 |
atcatcattgagttggaaagactcaactcgcgtcatgacatcaagga |
33139319 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr1; HSP #5
Raw Score: 56; E-Value: 5e-23
Query Start/End: Original strand, 133 - 320
Target Start/End: Complemental strand, 33121207 - 33121020
Alignment:
| Q |
133 |
cagatggcatgcaaggctccaggtgaggaaattgcatacaaaacaacactagcaatcttgaacaagctgtcaaactattcatgggttgcaaaaggagttc |
232 |
Q |
| |
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|||||| |||||||| | ||| |||||||||||||| |||||||||| ||||| || |||||||||| ||| ||||| |||| ||||||| ||||| |
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| T |
33121207 |
cagatgtcatgcaagccaccaagtgaggaaattgcacacaaaacaactctagccatactgaacaagctttcacactatgactgggaagcaaaagcagttc |
33121108 |
T |
|
| Q |
233 |
tcactctttctgcttttgctcttgaatatggtgacttctggctgctatcacaatatctaccaacagaaccacttgccaaatctttggc |
320 |
Q |
| |
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| || |||||||| ||||| ||||||| |||||| |||||| | || |||| |||| ||||||| ||||||||||||||| |||| |
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| T |
33121107 |
ttacactttctgcatttgcacttgaatttggtgaattctggttacttgaacaacatctttcaacagacccacttgccaaatctgtggc |
33121020 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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