View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF4599_low_4 (Length: 396)
Name: NF4599_low_4
Description: NF4599
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF4599_low_4 |
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Alignment Details
Target: chr7 (Bit Score: 320; Significance: 1e-180; HSPs: 1)
Name: chr7
Description:
Target: chr7; HSP #1
Raw Score: 320; E-Value: 1e-180
Query Start/End: Original strand, 12 - 380
Target Start/End: Complemental strand, 2268351 - 2267982
Alignment:
| Q |
12 |
atgagtgcacataaccagggaaagcaacaataaactaagaccaggaaagcaactaacaaaaggaaagnnnnnnnnnn-catgaccagacaaatgcaatca |
110 |
Q |
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| T |
2268351 |
atgagtgcacataaccagggaaagcaacaataaactaagaccaggaaagcaactaacaaaaggaaagaaaaaaaaaaacatgaccagacaaatgcaatca |
2268252 |
T |
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| Q |
111 |
agagttaattaaaaatgcaaagttctagttatatcaatcacatgaacaagtgtgaagaaatcaagtatctaagttaattcccaacattactatcaattag |
210 |
Q |
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| T |
2268251 |
agagttaattaaaaatgcaaagttctagttatatcaatcacatgaacaagtgtgaagaaatcaagtatctaagttaattcccaacattactatcaattac |
2268152 |
T |
|
| Q |
211 |
aatgtcattatagaaattttactagttaccgaagagcaaatgtgaagaatagttatgcaagggtaattatgaatagttatagatattatagtggaaacca |
310 |
Q |
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|||||||||||||||||||||||||||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
2268151 |
aatgtcattatagaaattttactagttaccaaagagcaaatgtgaagaatagttatgcaagggtaattatgaatagttatagatattatagtggaaacca |
2268052 |
T |
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| Q |
311 |
gcatctacagctcttacggtacatggcttagactcagccctgtcattctattgtaggtgcaggctattac |
380 |
Q |
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|||||||||||||||||||| ||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
2268051 |
gcatctacagctcttacggtgcatggcttagactcagccctgtcattctattgtaggtgcaggctattac |
2267982 |
T |
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