View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF4599_low_6 (Length: 308)
Name: NF4599_low_6
Description: NF4599
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF4599_low_6 |
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| [»] chr4 (3 HSPs) |
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Alignment Details
Target: chr4 (Bit Score: 270; Significance: 1e-151; HSPs: 3)
Name: chr4
Description:
Target: chr4; HSP #1
Raw Score: 270; E-Value: 1e-151
Query Start/End: Original strand, 10 - 308
Target Start/End: Complemental strand, 1869849 - 1869551
Alignment:
| Q |
10 |
gcagaacctgtgagagagctagaacaagaagctggatcaaacatttgtagcaacaaaaggaccaaagtgaattcagatgagtacaattgtggaacaagtg |
109 |
Q |
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| T |
1869849 |
gcagaacgtgtgagagagctagaacaagaagctggatcaaacatttgtagcaacaaaaggaccaaagtgaattcagatgagtacaattgtggaacaggtg |
1869750 |
T |
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| Q |
110 |
ataatactcttccagagatcaaagcaagagtgtcnnnnnnngatgtacttgtcatagtccattgtgagaaacaaaagggtatcttgctcaaaatactgac |
209 |
Q |
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| T |
1869749 |
ataatactcttccagagatcaaagcaagagtgtcaaaaaaagatgtacttgtcatagtccattgtgagaaacaaaagggtatcttgctcaaaatactgac |
1869650 |
T |
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| Q |
210 |
ccaccttgcaagtcttcatctttcagtagttaatagtagtgtcttgcaatttggaaaatccatccttgacatcaccatcatttgtaaggtacataatgc |
308 |
Q |
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| T |
1869649 |
ccaccttgcaagtcttcatctttcagtagttaatagtagtgtcttgcaatttggaaaatccatccttgacatcaccatcatttgtaaggtacataatgc |
1869551 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4; HSP #2
Raw Score: 102; E-Value: 1e-50
Query Start/End: Original strand, 114 - 288
Target Start/End: Complemental strand, 1916910 - 1916736
Alignment:
| Q |
114 |
tactcttccagagatcaaagcaagagtgtcnnnnnnngatgtacttgtcatagtccattgtgagaaacaaaagggtatcttgctcaaaatactgacccac |
213 |
Q |
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| T |
1916910 |
tactcttccagaggtcaaagcaaaagtgttacaaaaagatgtacttgtcatagtccattgtgagaaacaaaatggtattctgctcaaaatactgacctac |
1916811 |
T |
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| Q |
214 |
cttgcaagtcttcatctttcagtagttaatagtagtgtcttgcaatttggaaaatccatccttgacatcaccatc |
288 |
Q |
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| T |
1916810 |
cttgaaaatcttcatctttcagtagttaacagtagagtcttgaattttggaaaatccatccttgacatcaccatc |
1916736 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4; HSP #3
Raw Score: 45; E-Value: 1e-16
Query Start/End: Original strand, 12 - 84
Target Start/End: Complemental strand, 1916988 - 1916916
Alignment:
| Q |
12 |
agaacctgtgagagagctagaacaagaagctggatcaaacatttgtagcaacaaaaggaccaaagtgaattca |
84 |
Q |
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| T |
1916988 |
agaacgtgtgagagagctagaagaagaagctggatccaacatttgtactaacaaaaggaccaaactgagttca |
1916916 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr7 (Bit Score: 188; Significance: 1e-102; HSPs: 2)
Name: chr7
Description:
Target: chr7; HSP #1
Raw Score: 188; E-Value: 1e-102
Query Start/End: Original strand, 12 - 288
Target Start/End: Complemental strand, 17488694 - 17488418
Alignment:
| Q |
12 |
agaacctgtgagagagctagaacaagaagctggatcaaacatttgtagcaacaaaaggaccaaagtgaattcagatgagtacaattgtggaacaagtgat |
111 |
Q |
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||||| ||||||||||||||||||||||| |||||| |||||||||| |||||||||||||||||||||||||||||||||| |||||||||||||||| |
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| T |
17488694 |
agaacgtgtgagagagctagaacaagaagatggatccaacatttgtacaaacaaaaggaccaaagtgaattcagatgagtacagttgtggaacaagtgat |
17488595 |
T |
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| Q |
112 |
aatactcttccagagatcaaagcaagagtgtcnnnnnnngatgtacttgtcatagtccattgtgagaaacaaaagggtatcttgctcaaaatactgaccc |
211 |
Q |
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||||||||||||||| ||||||||| ||||| ||||||||||||||||||||||||||||||||||| |||||||||||||||||||||||| |
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| T |
17488594 |
aatactcttccagaggtcaaagcaaaagtgttacaaaatgatgtacttgtcatagtccattgtgagaaacaaaatggtatcttgctcaaaatactgacct |
17488495 |
T |
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| Q |
212 |
accttgcaagtcttcatctttcagtagttaatagtagtgtcttgcaatttggaaaatccatccttgacatcaccatc |
288 |
Q |
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| T |
17488494 |
gccttgaaaatcttcatctttcagtagttaacagtagtgtcttgaattttggaaaatccatccttgacatcaccatc |
17488418 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr7; HSP #2
Raw Score: 188; E-Value: 1e-102
Query Start/End: Original strand, 12 - 288
Target Start/End: Original strand, 17564520 - 17564796
Alignment:
| Q |
12 |
agaacctgtgagagagctagaacaagaagctggatcaaacatttgtagcaacaaaaggaccaaagtgaattcagatgagtacaattgtggaacaagtgat |
111 |
Q |
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| T |
17564520 |
agaacgtgtgagagagctagaacaagaagatggatccaacatttgtacaaacaaaaggaccaaagtgaattcagatgagtacagttgtggaacaagtgat |
17564619 |
T |
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| Q |
112 |
aatactcttccagagatcaaagcaagagtgtcnnnnnnngatgtacttgtcatagtccattgtgagaaacaaaagggtatcttgctcaaaatactgaccc |
211 |
Q |
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| T |
17564620 |
aatactcttccagaggtcaaagcaaaagtgttacaaaatgatgtacttgtcatagtccattgtgagaaacaaaatggtatcttgctcaaaatactgacct |
17564719 |
T |
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| Q |
212 |
accttgcaagtcttcatctttcagtagttaatagtagtgtcttgcaatttggaaaatccatccttgacatcaccatc |
288 |
Q |
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| T |
17564720 |
gccttgaaaatcttcatctttcagtagttaacagtagtgtcttgaattttggaaaatccatccttgacatcaccatc |
17564796 |
T |
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