View Alignment

This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.

Legend
 Query
 Query hiting target  Query hiting target's complemental strand
 Query's complemental strand hiting target  Query's complemental strand hiting target's complemental strand

Alignment Overview

Query: NF4600-Insertion-1 (Length: 933)

Name: NF4600-Insertion-1
Description: NF4600
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)


[»] NF4600-Insertion-1
NF4600-Insertion-1
[»] chr3 (9 HSPs)
chr3 (7-933)||(53476404-53477327)
chr3 (331-446)||(16926920-16927034)
chr3 (349-446)||(54567891-54567988)
chr3 (418-474)||(30179765-30179821)
chr3 (331-446)||(54368515-54368629)
chr3 (233-331)||(11659579-11659677)
chr3 (349-447)||(17001409-17001507)
chr3 (336-402)||(45138946-45139012)
chr3 (349-446)||(1723064-1723161)
[»] chr8 (8 HSPs)
chr8 (331-446)||(24532392-24532506)
chr8 (349-476)||(31197584-31197710)
chr8 (345-447)||(12317044-12317146)
chr8 (349-446)||(39052917-39053014)
chr8 (331-443)||(8716116-8716228)
chr8 (359-446)||(18004094-18004181)
chr8 (331-445)||(20301261-20301374)
chr8 (331-445)||(21087893-21088006)
[»] chr6 (9 HSPs)
chr6 (331-476)||(6542914-6543058)
chr6 (343-446)||(9705019-9705122)
chr6 (350-447)||(6054167-6054264)
chr6 (381-449)||(2753254-2753322)
chr6 (334-442)||(4868786-4868894)
chr6 (259-314)||(6237631-6237686)
chr6 (228-291)||(15082035-15082098)
chr6 (422-476)||(6237763-6237817)
chr6 (349-446)||(27653216-27653313)
[»] scaffold0092 (1 HSPs)
scaffold0092 (349-445)||(5655-5751)
[»] chr4 (9 HSPs)
chr4 (334-446)||(52559566-52559678)
chr4 (349-447)||(50543318-50543416)
chr4 (334-446)||(35788658-35788770)
chr4 (360-446)||(22845446-22845532)
chr4 (360-446)||(22863473-22863559)
chr4 (360-446)||(35788893-35788979)
chr4 (349-446)||(1518163-1518260)
chr4 (349-402)||(35609699-35609752)
chr4 (349-406)||(40717429-40717486)
[»] chr5 (11 HSPs)
chr5 (331-446)||(24270076-24270190)
chr5 (331-446)||(24346707-24346822)
chr5 (349-447)||(24528538-24528636)
chr5 (360-474)||(28510062-28510176)
chr5 (331-447)||(2063705-2063819)
chr5 (349-449)||(13701056-13701156)
chr5 (334-446)||(41666966-41667078)
chr5 (349-446)||(8081101-8081199)
chr5 (381-476)||(95286-95381)
chr5 (381-447)||(18333485-18333551)
chr5 (378-471)||(6413443-6413536)
[»] chr7 (9 HSPs)
chr7 (334-447)||(26239889-26240002)
chr7 (349-446)||(36277214-36277311)
chr7 (349-446)||(48243425-48243522)
chr7 (349-446)||(25620135-25620232)
chr7 (417-476)||(18826544-18826603)
chr7 (331-400)||(5871782-5871851)
chr7 (381-446)||(17202178-17202243)
chr7 (257-322)||(36575093-36575158)
chr7 (331-476)||(48661526-48661670)
[»] chr2 (7 HSPs)
chr2 (382-446)||(24396099-24396163)
chr2 (381-446)||(17854712-17854777)
chr2 (349-445)||(15124771-15124867)
chr2 (381-474)||(14927073-14927166)
chr2 (349-446)||(17854917-17855014)
chr2 (383-476)||(37840306-37840399)
chr2 (349-446)||(40379432-40379529)
[»] scaffold0692 (1 HSPs)
scaffold0692 (349-447)||(5742-5840)
[»] chr1 (5 HSPs)
chr1 (381-476)||(26173476-26173571)
chr1 (349-447)||(51589224-51589322)
chr1 (331-476)||(2859598-2859742)
chr1 (353-446)||(4112998-4113091)
chr1 (359-476)||(25145483-25145600)
[»] scaffold0129 (1 HSPs)
scaffold0129 (349-447)||(14301-14399)
[»] scaffold0048 (1 HSPs)
scaffold0048 (349-406)||(81881-81938)


Alignment Details
Target: chr3 (Bit Score: 832; Significance: 0; HSPs: 9)
Name: chr3
Description:

Target: chr3; HSP #1
Raw Score: 832; E-Value: 0
Query Start/End: Original strand, 7 - 933
Target Start/End: Complemental strand, 53477327 - 53476404
Alignment:
Q  7 aataatgtaatgtaatgtaatgaccactccctcttcacacaaacattgccacataatatgtcatttcacgcaaatattgattggagaaattataaataaa 106  Q
    ||||||||||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  53477327 aataatgtaatgtcatgtaatgaccactccctcttcacacaaacattgccacataatatgtcatttcacgcaaatattgattggagaaattataaataaa 53477228  T
Q  107 tacaaaaatattgaattaatttattaacaattggcaatgcaaagtataaaataatactaattagatggtactacaatccaaaaaacgcaacatcggagtt 206  Q
    ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  53477227 tacaaaaatattgaattaatttattaacaattggcaatgcaaagtataaaataatactaattagatggtactacaatccaaaaaacgcaacatcggagtt 53477128  T
Q  207 gattagtgcaatccgacgtggacgctcaggactgaacatctgaagcgtgaatataaatagttggtggtccgatagtgaaaacctggtatcaagtgatcca 306  Q
    |||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |||||||||||||||||||||||||||||||||||||||||    
T  53477127 gattagtgcaatccgacgtggacgctcaggactgaacatctgaagcgtgaatataaatggttggtggtccgatagtgaaaacctggtatcaagtgatcca 53477028  T
Q  307 atggatctcggaggaagctctaataatggatcttaaaggagtctctgataacatcttagaaatcaatgtttggtctaacacaaacccacaaaaccgactt 406  Q
    |||||||| |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||||    
T  53477027 atggatcttggaggaagctctaataatggatcttaaaggagtctctgataacatcttagaaatcaatgtttggtctaacacaaacccacaaaatcgactt 53476928  T
Q  407 atgggattataattaccctcacttataaacacattgtcagatcttcccttatctaatgtgtgactcttaagagcttgcctctcatgaaatcacatatata 506  Q
    ||||||||||||||||||||||||||||||||||||||||| ||||||||||||||| ||||||||||||||||||||||||||||||||||||||||||    
T  53476927 atgggattataattaccctcacttataaacacattgtcagaccttcccttatctaatttgtgactcttaagagcttgcctctcatgaaatcacatatata 53476828  T
Q  507 cgcctctcatgaaatgacattgttagacaattgtacttgaaaagnnnnnnngttagctaagtaaatcatacgtttgtacagctagccatcggtgtcaatt 606  Q
    |||||||||||||||||||||| |||||||||||||||||||||       |||||||||||||||||||||||||||||||||||||||||||||||||    
T  53476827 cgcctctcatgaaatgacattgctagacaattgtacttgaaaagaaaaaaagttagctaagtaaatcatacgtttgtacagctagccatcggtgtcaatt 53476728  T
Q  607 cataaaatggaacattaataataattgtgactttataggggtaaggggaatataaagttaggaccactaatacaaacgtagcatgcagatttgtggaaat 706  Q
    ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  53476727 cataaaatggaacattaataataattgtgactttataggggtaaggggaatataaagttaggaccactaatacaaacgtagcatgcagatttgtggaaat 53476628  T
Q  707 aaagttgtttgctaatccttgaataaaacgtatatatagatactagaagagcttattgaagagccttaaactacaccgacaaaggagtacagagtgatat 806  Q
    ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  53476627 aaagttgtttgctaatccttgaataaaacgtatatatagatactagaagagcttattgaagagccttaaactacaccgacaaaggagtacagagtgatat 53476528  T
Q  807 aaaatnnnnnnntactaagaatagaaaagaattccagcctatccaaattcttgagagggacatgccaccgaaatggcccactttgttgaggtatgatggg 906  Q
    |||||       ||||||||||||||||||| ||||||||||||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  53476527 aaaat-ggggggtactaagaatagaaaagaa-tccagcctatccaaaatcttgagagggacatgccaccgaaatggcccactttgttgaggtatgatggg 53476430  T
Q  907 ccacgtgtatagcgccaaaacgtagtt 933  Q
    |||||||||||||| ||||||||||||    
T  53476429 ccacgtgtatagcg-caaaacgtagtt 53476404  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #2
Raw Score: 36; E-Value: 0.00000000009
Query Start/End: Original strand, 331 - 446
Target Start/End: Original strand, 16926920 - 16927034
Alignment:
Q  331 aatggatcttaaaggagtctctgataacatcttagaaatcaatgtttggtctaacacaaacccacaaaaccgacttatgggattataattaccctcactt 430  Q
    |||||||||| ||| || |||||||| |||||||||||||   |||  |  |||||||| |||||||||||| ||| || ||| |  ||||||| |||||    
T  16926920 aatggatcttgaag-agactctgataccatcttagaaatcgtggttgagcttaacacaaccccacaaaaccggcttgtgagatgaggattacccccactt 16927018  T
Q  431 ataaacacattgtcag 446  Q
    ||||||||||||||||    
T  16927019 ataaacacattgtcag 16927034  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #3
Raw Score: 34; E-Value: 0.000000001
Query Start/End: Original strand, 349 - 446
Target Start/End: Complemental strand, 54567988 - 54567891
Alignment:
Q  349 ctctgataacatcttagaaatcaatgtttggtctaacacaaacccacaaaaccgacttatgggattataattaccctcacttataaacacattgtcag 446  Q
    |||||||| |||||||||||||   ||| || ||||||||| |||||||||||| ||| || | | |  ||| ||| |||||||||||||||||||||    
T  54567988 ctctgataccatcttagaaatcgtggttgggcctaacacaaccccacaaaaccggcttgtgaggtgaggatttcccccacttataaacacattgtcag 54567891  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #4
Raw Score: 33; E-Value: 0.000000005
Query Start/End: Original strand, 418 - 474
Target Start/End: Original strand, 30179765 - 30179821
Alignment:
Q  418 attaccctcacttataaacacattgtcagatcttcccttatctaatgtgtgactctt 474  Q
    ||||||| ||||||||||||||||||||| || || ||||||| ||||| |||||||    
T  30179765 attacccccacttataaacacattgtcaggtcatctcttatctgatgtgggactctt 30179821  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #5
Raw Score: 32; E-Value: 0.00000002
Query Start/End: Original strand, 331 - 446
Target Start/End: Complemental strand, 54368629 - 54368515
Alignment:
Q  331 aatggatcttaaaggagtctctgataacatcttagaaatcaatgtttggtctaacacaaacccacaaaaccgacttatgggattataattaccctcactt 430  Q
    |||||||||| ||| || |||||||| |||||||||||||   ||| |||||||||||| |||| ||||||| ||| || | | |  ||| ||| |||||    
T  54368629 aatggatcttgaag-aggctctgataccatcttagaaatcgtggttgggtctaacacaaccccataaaaccggcttgtgaggtgaggattgcccccactt 54368531  T
Q  431 ataaacacattgtcag 446  Q
    ||||||||||| ||||    
T  54368530 ataaacacattttcag 54368515  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #6
Raw Score: 31; E-Value: 0.00000008
Query Start/End: Original strand, 233 - 331
Target Start/End: Original strand, 11659579 - 11659677
Alignment:
Q  233 caggactgaacatctgaagcgtgaatataaatagttggtggtccgatagtgaaaacctggtatcaagtgatccaatggatctcggaggaagctctaata 331  Q
    |||||||| |||| || ||| || | |||||| || ||||||||||||| ||||||||| || || ||  ||||| |||||| |||||| |||||||||    
T  11659579 caggactggacatttggagcatggacataaatggtgggtggtccgatagcgaaaacctgatagcaggttgtccaacggatcttggaggaggctctaata 11659677  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #7
Raw Score: 31; E-Value: 0.00000008
Query Start/End: Original strand, 349 - 447
Target Start/End: Original strand, 17001409 - 17001507
Alignment:
Q  349 ctctgataacatcttagaaatcaatgtttggtctaacacaaacccacaaaaccgacttatgggattataattaccctcacttataaacacattgtcaga 447  Q
    |||||||| ||| ||||||||||  ||| |  ||||||| | ||||||||| || |||||| | | || ||| ||| ||||||||||||||||||||||    
T  17001409 ctctgataccattttagaaatcatggttggacctaacactaccccacaaaatcgccttatgaggtgatgattgcccccacttataaacacattgtcaga 17001507  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #8
Raw Score: 31; E-Value: 0.00000008
Query Start/End: Original strand, 336 - 402
Target Start/End: Original strand, 45138946 - 45139012
Alignment:
Q  336 atcttaaaggagtctctgataacatcttagaaatcaatgtttggtctaacacaaacccacaaaaccg 402  Q
    ||||| |||||| |||||||| |||||||||||||   ||| ||||| |||||| ||||||||||||    
T  45138946 atcttgaaggaggctctgataccatcttagaaatcgtggttgggtcttacacaaccccacaaaaccg 45139012  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #9
Raw Score: 30; E-Value: 0.0000003
Query Start/End: Original strand, 349 - 446
Target Start/End: Original strand, 1723064 - 1723161
Alignment:
Q  349 ctctgataacatcttagaaatcaatgtttggtctaacacaaacccacaaaaccgacttatgggattataattaccctcacttataaacacattgtcag 446  Q
    |||||||| |||||||||||||   ||| || ||||||||| |||||||||||| ||| || | | |  ||| ||| |||||||||||| ||||||||    
T  1723064 ctctgataccatcttagaaatcgtggttgggcctaacacaaccccacaaaaccggcttgtgaggtgaggattgcccccacttataaacaaattgtcag 1723161  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8 (Bit Score: 44; Significance: 0.000000000000001; HSPs: 8)
Name: chr8
Description:

Target: chr8; HSP #1
Raw Score: 44; E-Value: 0.000000000000001
Query Start/End: Original strand, 331 - 446
Target Start/End: Original strand, 24532392 - 24532506
Alignment:
Q  331 aatggatcttaaaggagtctctgataacatcttagaaatcaatgtttggtctaacacaaacccacaaaaccgacttatgggattataattaccctcactt 430  Q
    |||||||||| |||| | |||||||| ||||||||||||||  ||| || ||||||||| |||||||||||| ||| || | | || ||| ||| |||||    
T  24532392 aatggatcttgaagggg-ctctgataccatcttagaaatcatggttgggcctaacacaaccccacaaaaccggcttgtgaggtgatgattgcccccactt 24532490  T
Q  431 ataaacacattgtcag 446  Q
    ||||||||||||||||    
T  24532491 ataaacacattgtcag 24532506  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #2
Raw Score: 40; E-Value: 0.0000000000004
Query Start/End: Original strand, 349 - 476
Target Start/End: Complemental strand, 31197710 - 31197584
Alignment:
Q  349 ctctgataacatcttagaaatcaatgtttggtctaacacaaacccacaaaaccgacttatgggattataattaccctcacttataaacacattgtcagat 448  Q
    |||||||| |||||||||||||   ||| || ||||||||| || ||||||||||||| || | | | ||||||||| |||||||||||||||||||||     
T  31197710 ctctgataccatcttagaaatctg-gttgggcctaacacaaccctacaaaaccgacttttgaggtgagaattacccttacttataaacacattgtcagac 31197612  T
Q  449 cttcccttatctaatgtgtgactcttaa 476  Q
    | || | ||||| ||||  |||||||||    
T  31197611 catcacctatctgatgtaggactcttaa 31197584  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #3
Raw Score: 35; E-Value: 0.0000000003
Query Start/End: Original strand, 345 - 447
Target Start/End: Complemental strand, 12317146 - 12317044
Alignment:
Q  345 gagtctctgataacatcttagaaatcaatgtttggtctaacacaaacccacaaaaccgacttatgggattataattaccctcacttataaacacattgtc 444  Q
    |||||||||||| |||||||||||||   ||| || ||||||||| ||||||||| |  |||||| | | |  ||| ||| |||||||||||||||||||    
T  12317146 gagtctctgataccatcttagaaatcgtggttgggcctaacacaatcccacaaaatcagcttatgaggtgaggattgcccccacttataaacacattgtc 12317047  T
Q  445 aga 447  Q
    |||    
T  12317046 aga 12317044  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #4
Raw Score: 34; E-Value: 0.000000001
Query Start/End: Original strand, 349 - 446
Target Start/End: Original strand, 39052917 - 39053014
Alignment:
Q  349 ctctgataacatcttagaaatcaatgtttggtctaacacaaacccacaaaaccgacttatgggattataattaccctcacttataaacacattgtcag 446  Q
    |||| ||| |||||||||||||  |||| || ||||||||| |||||||||||| ||| || | | |  ||| ||| |||||||||||||||||||||    
T  39052917 ctctaataccatcttagaaatcgttgttgggcctaacacaaccccacaaaaccggcttgtgaggtgaggattgcccccacttataaacacattgtcag 39053014  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #5
Raw Score: 33; E-Value: 0.000000005
Query Start/End: Original strand, 331 - 443
Target Start/End: Complemental strand, 8716228 - 8716116
Alignment:
Q  331 aatggatcttaaaggagtctctgataacatcttagaaatcaatgtttggtctaacacaaacccacaaaaccgacttatgggattataattaccctcactt 430  Q
    |||||||||||| | || |||||||| ||| |||||||||   ||| |||||||||||| ||||||||| || |||||| | | |  ||| || ||||||    
T  8716228 aatggatcttaacgaaggctctgataccatattagaaatcttggttgggtctaacacaaccccacaaaatcggcttatgaggtgaggattgccttcactt 8716129  T
Q  431 ataaacacattgt 443  Q
     ||||||||||||    
T  8716128 ttaaacacattgt 8716116  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #6
Raw Score: 32; E-Value: 0.00000002
Query Start/End: Original strand, 359 - 446
Target Start/End: Original strand, 18004094 - 18004181
Alignment:
Q  359 atcttagaaatcaatgtttggtctaacacaaacccacaaaaccgacttatgggattataattaccctcacttataaacacattgtcag 446  Q
    ||||||||||||   ||| || ||||||||| | ||||||||||||||||||| | |  ||| ||| |||||||||||| ||||||||    
T  18004094 atcttagaaatcttggttgggcctaacacaacctcacaaaaccgacttatggggtgaggattgcccccacttataaacatattgtcag 18004181  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #7
Raw Score: 31; E-Value: 0.00000008
Query Start/End: Original strand, 331 - 445
Target Start/End: Complemental strand, 20301374 - 20301261
Alignment:
Q  331 aatggatcttaaaggagtctctgataacatcttagaaatcaatgtttggtctaacacaaacccacaaaaccgacttatgggattataattaccctcactt 430  Q
    |||||||||| ||| || |||||||| |||||||||||||   ||| || ||||||||| | |||||||| | ||| || | |||  ||| ||| |||||    
T  20301374 aatggatcttgaag-aggctctgataccatcttagaaatcgtggttgggcctaacacaacctcacaaaacgggcttgtgaggttaggattgcccccactt 20301276  T
Q  431 ataaacacattgtca 445  Q
    |||||||||||||||    
T  20301275 ataaacacattgtca 20301261  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #8
Raw Score: 31; E-Value: 0.00000008
Query Start/End: Original strand, 331 - 445
Target Start/End: Complemental strand, 21088006 - 21087893
Alignment:
Q  331 aatggatcttaaaggagtctctgataacatcttagaaatcaatgtttggtctaacacaaacccacaaaaccgacttatgggattataattaccctcactt 430  Q
    |||||||||| ||| || |||||||| |||||||||||||   ||| || ||||||||| | |||||||| | ||| || | |||  ||| ||| |||||    
T  21088006 aatggatcttgaag-aggctctgataccatcttagaaatcgtggttgggcctaacacaacctcacaaaacgggcttgtgaggttaggattgcccccactt 21087908  T
Q  431 ataaacacattgtca 445  Q
    |||||||||||||||    
T  21087907 ataaacacattgtca 21087893  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6 (Bit Score: 42; Significance: 0.00000000000002; HSPs: 9)
Name: chr6
Description:

Target: chr6; HSP #1
Raw Score: 42; E-Value: 0.00000000000002
Query Start/End: Original strand, 331 - 476
Target Start/End: Original strand, 6542914 - 6543058
Alignment:
Q  331 aatggatcttaaaggagtctctgataacatcttagaaatcaatgtttggtctaacacaaacccacaaaaccgacttatgggattataattaccctcactt 430  Q
    |||||||||| ||| || |||||||| |||||| ||||||   ||| |||||||||||| |||||||||||| ||| || | | || ||| ||| |||||    
T  6542914 aatggatcttgaag-aggctctgataccatctttgaaatcgtggttgggtctaacacaaccccacaaaaccggcttctgaggtgatgattgcccccactt 6543012  T
Q  431 ataaacacattgtcagatcttcccttatctaatgtgtgactcttaa 476  Q
    ||||||||||||||||| | || ||||||  |||||  ||||||||    
T  6543013 ataaacacattgtcagaccatctcttatccgatgtggaactcttaa 6543058  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #2
Raw Score: 40; E-Value: 0.0000000000004
Query Start/End: Original strand, 343 - 446
Target Start/End: Complemental strand, 9705122 - 9705019
Alignment:
Q  343 aggagtctctgataacatcttagaaatcaatgtttggtctaacacaaacccacaaaaccgacttatgggattataattaccctcacttataaacacattg 442  Q
    ||||| |||||||| ||||||||||||    ||| || ||||||||| |||||||||||||||| || | | || ||| ||| |||||||||||||||||    
T  9705122 aggaggctctgataccatcttagaaatggtggttgggcctaacacaaccccacaaaaccgacttgtgaggtgatgattgcccccacttataaacacattg 9705023  T
Q  443 tcag 446  Q
    ||||    
T  9705022 tcag 9705019  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #3
Raw Score: 34; E-Value: 0.000000001
Query Start/End: Original strand, 350 - 447
Target Start/End: Complemental strand, 6054264 - 6054167
Alignment:
Q  350 tctgataacatcttagaaatcaatgtttggtctaacacaaacccacaaaaccgacttatgggattataattaccctcacttataaacacattgtcaga 447  Q
    ||||||| |||||||||||||   |||  ||||||||| | |||||||||| |||||||| | | || |||  ||||||||||||||| |||||||||    
T  6054264 tctgatatcatcttagaaatcgtggttgagtctaacacgatcccacaaaactgacttatgaggtgatgattgtcctcacttataaacagattgtcaga 6054167  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #4
Raw Score: 33; E-Value: 0.000000005
Query Start/End: Original strand, 381 - 449
Target Start/End: Complemental strand, 2753322 - 2753254
Alignment:
Q  381 ctaacacaaacccacaaaaccgacttatgggattataattaccctcacttataaacacattgtcagatc 449  Q
    ||||||||| |||||||||||| ||| || | | |  ||||||| ||||||||||||||||||||||||    
T  2753322 ctaacacaaccccacaaaaccgccttgtgaggtgaggattacccccacttataaacacattgtcagatc 2753254  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #5
Raw Score: 33; E-Value: 0.000000005
Query Start/End: Original strand, 334 - 442
Target Start/End: Original strand, 4868786 - 4868894
Alignment:
Q  334 ggatcttaaaggagtctctgataacatcttagaaatcaatgtttggtctaacacaaacccacaaaaccgacttatgggattataattaccctcacttata 433  Q
    |||||||  ||||| |||||||| |||||||||||||   ||| || ||||||||| |||||||||||| ||| || | | |  ||| ||| ||||||||    
T  4868786 ggatcttggaggaggctctgataccatcttagaaatcgtggttgggcctaacacaaccccacaaaaccggcttgtgaggtgaggattgcccccacttata 4868885  T
Q  434 aacacattg 442  Q
    |||||||||    
T  4868886 aacacattg 4868894  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #6
Raw Score: 32; E-Value: 0.00000002
Query Start/End: Original strand, 259 - 314
Target Start/End: Original strand, 6237631 - 6237686
Alignment:
Q  259 ataaatagttggtggtccgatagtgaaaacctggtatcaagtgatccaatggatct 314  Q
    |||||| || ||||||||||||| | |||||||||| |||||| ||||||||||||    
T  6237631 ataaatggtgggtggtccgatagcggaaacctggtagcaagtggtccaatggatct 6237686  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #7
Raw Score: 32; E-Value: 0.00000002
Query Start/End: Original strand, 228 - 291
Target Start/End: Original strand, 15082035 - 15082098
Alignment:
Q  228 acgctcaggactgaacatctgaagcgtgaatataaatagttggtggtccgatagtgaaaacctg 291  Q
    ||||||| ||||| |||||||||||||||| |||||| || ||||| |||||| || |||||||    
T  15082035 acgctcaagactggacatctgaagcgtgaacataaatggtgggtggcccgataatggaaacctg 15082098  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #8
Raw Score: 31; E-Value: 0.00000008
Query Start/End: Original strand, 422 - 476
Target Start/End: Original strand, 6237763 - 6237817
Alignment:
Q  422 ccctcacttataaacacattgtcagatcttcccttatctaatgtgtgactcttaa 476  Q
    |||||||||||||| ||||||||||  |||| |||||| |||||| |||||||||    
T  6237763 ccctcacttataaatacattgtcaggccttcacttatccaatgtgggactcttaa 6237817  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #9
Raw Score: 30; E-Value: 0.0000003
Query Start/End: Original strand, 349 - 446
Target Start/End: Complemental strand, 27653313 - 27653216
Alignment:
Q  349 ctctgataacatcttagaaatcaatgtttggtctaacacaaacccacaaaaccgacttatgggattataattaccctcacttataaacacattgtcag 446  Q
    |||||||| ||| |||||||||   ||| || ||||||||| |||||||||||||||| || | | |  ||| ||| |||||||||||| ||||||||    
T  27653313 ctctgataccatattagaaatcgtggttgggcctaacacaatcccacaaaaccgacttgtgaggtgaggatttcccccacttataaacaaattgtcag 27653216  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: scaffold0092 (Bit Score: 41; Significance: 0.00000000000009; HSPs: 1)
Name: scaffold0092
Description:

Target: scaffold0092; HSP #1
Raw Score: 41; E-Value: 0.00000000000009
Query Start/End: Original strand, 349 - 445
Target Start/End: Complemental strand, 5751 - 5655
Alignment:
Q  349 ctctgataacatcttagaaatcaatgtttggtctaacacaaacccacaaaaccgacttatgggattataattaccctcacttataaacacattgtca 445  Q
    |||||||| |||||||||||||   ||| |||||||||||| |||||||||||| ||| |  ||| |  ||||||| ||||||||||||||||||||    
T  5751 ctctgataccatcttagaaatcgtggttgggtctaacacaaccccacaaaaccggcttgtaagatgaggattacccccacttataaacacattgtca 5655  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4 (Bit Score: 41; Significance: 0.00000000000009; HSPs: 9)
Name: chr4
Description:

Target: chr4; HSP #1
Raw Score: 41; E-Value: 0.00000000000009
Query Start/End: Original strand, 334 - 446
Target Start/End: Complemental strand, 52559678 - 52559566
Alignment:
Q  334 ggatcttaaaggagtctctgataacatcttagaaatcaatgtttggtctaacacaaacccacaaaaccgacttatgggattataattaccctcacttata 433  Q
    |||||||  ||||| ||||||||  |||||||||||||  ||| || ||||||||| |||||||||||| ||| || | | || ||| ||| ||||||||    
T  52559678 ggatctttgaggaggctctgatactatcttagaaatcatggttgggcctaacacaaccccacaaaaccggcttgtgaggtgatgattgcccccacttata 52559579  T
Q  434 aacacattgtcag 446  Q
    |||||||||||||    
T  52559578 aacacattgtcag 52559566  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #2
Raw Score: 39; E-Value: 0.000000000001
Query Start/End: Original strand, 349 - 447
Target Start/End: Original strand, 50543318 - 50543416
Alignment:
Q  349 ctctgataacatcttagaaatcaatgtttggtctaacacaaacccacaaaaccgacttatgggattataattaccctcacttataaacacattgtcaga 447  Q
    ||||||||||||||||||||||   ||| || ||||||||| |||||||||||| ||| |||| | |  ||| ||| |||||||| |||||||||||||    
T  50543318 ctctgataacatcttagaaatcgtggttgggcctaacacaaccccacaaaaccggcttgtggggtgaggattgcccccacttatacacacattgtcaga 50543416  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #3
Raw Score: 33; E-Value: 0.000000005
Query Start/End: Original strand, 334 - 446
Target Start/End: Complemental strand, 35788770 - 35788658
Alignment:
Q  334 ggatcttaaaggagtctctgataacatcttagaaatcaatgtttggtctaacacaaacccacaaaaccgacttatgggattataattaccctcacttata 433  Q
    |||||||  ||||| |||||||| |||||||||||||   ||| || ||||||||| |||| ||||||| ||| || | | |  ||| ||| ||||||||    
T  35788770 ggatcttggaggaggctctgataccatcttagaaatcgtggttgggcctaacacaaccccataaaaccggcttgtgaggtgaggattgcccccacttata 35788671  T
Q  434 aacacattgtcag 446  Q
    |||||||||||||    
T  35788670 aacacattgtcag 35788658  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #4
Raw Score: 31; E-Value: 0.00000008
Query Start/End: Original strand, 360 - 446
Target Start/End: Original strand, 22845446 - 22845532
Alignment:
Q  360 tcttagaaatcaatgtttggtctaacacaaacccacaaaaccgacttatgggattataattaccctcacttataaacacattgtcag 446  Q
    |||||||||||   ||| || ||||||||| |||||||||||| ||| || | | |  ||||||| |||||||||||||||||||||    
T  22845446 tcttagaaatcgtggttgggcctaacacaaccccacaaaaccggcttgtgaggtgaggattacccccacttataaacacattgtcag 22845532  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #5
Raw Score: 31; E-Value: 0.00000008
Query Start/End: Original strand, 360 - 446
Target Start/End: Complemental strand, 22863559 - 22863473
Alignment:
Q  360 tcttagaaatcaatgtttggtctaacacaaacccacaaaaccgacttatgggattataattaccctcacttataaacacattgtcag 446  Q
    |||||||||||   ||| || ||||||||| |||||||||||| ||| |||| | |  ||| ||| |||||||||||||||||||||    
T  22863559 tcttagaaatcgtggttgggcctaacacaaccccacaaaaccggcttgtggggtgaggattgcccccacttataaacacattgtcag 22863473  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #6
Raw Score: 31; E-Value: 0.00000008
Query Start/End: Original strand, 360 - 446
Target Start/End: Complemental strand, 35788979 - 35788893
Alignment:
Q  360 tcttagaaatcaatgtttggtctaacacaaacccacaaaaccgacttatgggattataattaccctcacttataaacacattgtcag 446  Q
    |||||||||||   ||| || ||||||||| |||||||||||| ||| || ||| |  ||| ||| |||||||||||||||||||||    
T  35788979 tcttagaaatcgtggttgggcctaacacaaccccacaaaaccggcttgtgagatgaggattgcccccacttataaacacattgtcag 35788893  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #7
Raw Score: 30; E-Value: 0.0000003
Query Start/End: Original strand, 349 - 446
Target Start/End: Complemental strand, 1518260 - 1518163
Alignment:
Q  349 ctctgataacatcttagaaatcaatgtttggtctaacacaaacccacaaaaccgacttatgggattataattaccctcacttataaacacattgtcag 446  Q
    |||||||| |||||||||||||   ||| || ||||||||| |||||||||||| ||| || | | |  ||| ||| |||||||||||| ||||||||    
T  1518260 ctctgataccatcttagaaatcgtggttaggcctaacacaaccccacaaaaccggcttgtgagctgaggattgcccccacttataaacaaattgtcag 1518163  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #8
Raw Score: 30; E-Value: 0.0000003
Query Start/End: Original strand, 349 - 402
Target Start/End: Original strand, 35609699 - 35609752
Alignment:
Q  349 ctctgataacatcttagaaatcaatgtttggtctaacacaaacccacaaaaccg 402  Q
    |||||||| ||||||||||||||  ||| ||||| |||||| ||||||||||||    
T  35609699 ctctgataccatcttagaaatcatggttgggtcttacacaaccccacaaaaccg 35609752  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #9
Raw Score: 30; E-Value: 0.0000003
Query Start/End: Original strand, 349 - 406
Target Start/End: Original strand, 40717429 - 40717486
Alignment:
Q  349 ctctgataacatcttagaaatcaatgtttggtctaacacaaacccacaaaaccgactt 406  Q
    |||||||| |||||||||||||   ||| || ||||||||| ||||||||||||||||    
T  40717429 ctctgataccatcttagaaatcgtggttgggcctaacacaaccccacaaaaccgactt 40717486  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5 (Bit Score: 40; Significance: 0.0000000000004; HSPs: 11)
Name: chr5
Description:

Target: chr5; HSP #1
Raw Score: 40; E-Value: 0.0000000000004
Query Start/End: Original strand, 331 - 446
Target Start/End: Original strand, 24270076 - 24270190
Alignment:
Q  331 aatggatcttaaaggagtctctgataacatcttagaaatcaatgtttggtctaacacaaacccacaaaaccgacttatgggattataattaccctcactt 430  Q
    ||||||||||  ||||| |||||||| ||||||| |||||  || |||||||||||||| |||||||||||| ||| || | | |  ||||||| |||||    
T  24270076 aatggatcttggaggaggctctgataccatcttaaaaatcg-tggttggtctaacacaaccccacaaaaccggcttgtgaggtgagtattacccccactt 24270174  T
Q  431 ataaacacattgtcag 446  Q
    ||||| ||||||||||    
T  24270175 ataaatacattgtcag 24270190  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #2
Raw Score: 40; E-Value: 0.0000000000004
Query Start/End: Original strand, 331 - 446
Target Start/End: Original strand, 24346707 - 24346822
Alignment:
Q  331 aatggatcttaaaggagtctctgataacatcttagaaatcaatgtttggtctaacacaaacccacaaaaccgacttatgggattataattaccctcactt 430  Q
    ||||||||||  ||||| |||||||| ||||||| |||||   ||| |||||||||||| |||||||||||| ||| || | | |  ||||||| |||||    
T  24346707 aatggatcttggaggaggctctgataccatcttaaaaatcgtggttgggtctaacacaaccccacaaaaccggcttgtgaggtgagtattacccccactt 24346806  T
Q  431 ataaacacattgtcag 446  Q
    ||||| ||||||||||    
T  24346807 ataaatacattgtcag 24346822  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #3
Raw Score: 39; E-Value: 0.000000000001
Query Start/End: Original strand, 349 - 447
Target Start/End: Complemental strand, 24528636 - 24528538
Alignment:
Q  349 ctctgataacatcttagaaatcaatgtttggtctaacacaaacccacaaaaccgacttatgggattataattaccctcacttataaacacattgtcaga 447  Q
    |||||||| ||||||||||||||  ||| || ||||||||| |||||||||||| ||| || | | |  ||| ||| ||||||||||||||||||||||    
T  24528636 ctctgataccatcttagaaatcatggttgggcctaacacaaccccacaaaaccggcttgtgaggtgaggattgcccccacttataaacacattgtcaga 24528538  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #4
Raw Score: 39; E-Value: 0.000000000001
Query Start/End: Original strand, 360 - 474
Target Start/End: Complemental strand, 28510176 - 28510062
Alignment:
Q  360 tcttagaaatcaatgtttggtctaacacaaacccacaaaaccgacttatgggattataattaccctcacttataaacacattgtcagatcttcccttatc 459  Q
    |||||||||||   ||| || ||||||||| |||||||||||| |||||| ||| |  ||| || |||||||||||||||||||||| || || ||||||    
T  28510176 tcttagaaatcgtggttgggcctaacacaaccccacaaaaccggcttatgagatgaggattgccttcacttataaacacattgtcaggtcatctcttatc 28510077  T
Q  460 taatgtgtgactctt 474  Q
    | ||||  |||||||    
T  28510076 tgatgttggactctt 28510062  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #5
Raw Score: 37; E-Value: 0.00000000002
Query Start/End: Original strand, 331 - 447
Target Start/End: Original strand, 2063705 - 2063819
Alignment:
Q  331 aatggatcttaaaggagtctctgataacatcttagaaatcaatgtttggtctaacacaaacccacaaaaccgacttatgggattataattaccctcactt 430  Q
    |||||||||| ||| || |||||||| |||||||||||||   ||| || ||||||||| |||||||||||||||| || | | |  ||| ||| |||||    
T  2063705 aatggatcttgaag-aggctctgataccatcttagaaatcgtggttgggcctaacacaaccccacaaaaccgacttgtgag-tgaggattgcccccactt 2063802  T
Q  431 ataaacacattgtcaga 447  Q
    |||||||||||||||||    
T  2063803 ataaacacattgtcaga 2063819  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #6
Raw Score: 37; E-Value: 0.00000000002
Query Start/End: Original strand, 349 - 449
Target Start/End: Original strand, 13701056 - 13701156
Alignment:
Q  349 ctctgataacatcttagaaatcaatgtttggtctaacacaaacccacaaaaccgacttatgggattataattaccctcacttataaacacattgtcagat 448  Q
    |||||||| |||||||||||||   ||| || ||||||| | |||||||||||||||  |||| | | |||| ||| ||||||||||||||||||| |||    
T  13701056 ctctgatatcatcttagaaatcgtggttaggcctaacacgaccccacaaaaccgactcttggggtgagaattgcccccacttataaacacattgtcggat 13701155  T
Q  449 c 449  Q
    |    
T  13701156 c 13701156  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #7
Raw Score: 37; E-Value: 0.00000000002
Query Start/End: Original strand, 334 - 446
Target Start/End: Original strand, 41666966 - 41667078
Alignment:
Q  334 ggatcttaaaggagtctctgataacatcttagaaatcaatgtttggtctaacacaaacccacaaaaccgacttatgggattataattaccctcacttata 433  Q
    |||||||  ||||| |||||||| |||||||||||||   ||| || ||||||||| |||||||||||| ||| || | | |  ||| ||| ||||||||    
T  41666966 ggatcttggaggaggctctgataccatcttagaaatcgtggttgggcctaacacaaccccacaaaaccggcttgtgaggtgaggattgcccccacttata 41667065  T
Q  434 aacacattgtcag 446  Q
    |||||||||||||    
T  41667066 aacacattgtcag 41667078  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #8
Raw Score: 35; E-Value: 0.0000000003
Query Start/End: Original strand, 349 - 446
Target Start/End: Original strand, 8081101 - 8081199
Alignment:
Q  349 ctctgataacatcttagaaatcaatgtttggtctaacacaaacccacaaaaccgacttatgggattataatt-accctcacttataaacacattgtcag 446  Q
    |||||||| ||||||||||||||  ||| || ||||||||| |||||||||||| ||| || ||| |  |||  ||| |||||||||||||||||||||    
T  8081101 ctctgataccatcttagaaatcatggttgggcctaacacaaccccacaaaaccggcttgtgagatgaggattgccccccacttataaacacattgtcag 8081199  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #9
Raw Score: 32; E-Value: 0.00000002
Query Start/End: Original strand, 381 - 476
Target Start/End: Original strand, 95286 - 95381
Alignment:
Q  381 ctaacacaaacccacaaaaccgacttatgggattataattaccctcacttataaacacattgtcagatcttcccttatctaatgtgtgactcttaa 476  Q
    ||||||||| |||||||||||| ||| || ||| |  |||  || ||||||||||||||||||||| || || | ||||  |||||||||||||||    
T  95286 ctaacacaaccccacaaaaccggcttgtgagatgaggattgtccccacttataaacacattgtcaggtcatcacctatccgatgtgtgactcttaa 95381  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #10
Raw Score: 31; E-Value: 0.00000008
Query Start/End: Original strand, 381 - 447
Target Start/End: Original strand, 18333485 - 18333551
Alignment:
Q  381 ctaacacaaacccacaaaaccgacttatgggattataattaccctcacttataaacacattgtcaga 447  Q
    ||||||||| |||||||||||| ||| || | | |  ||||||| ||||||||||||||||||||||    
T  18333485 ctaacacaaccccacaaaaccggcttgtgaggtgaggattacccccacttataaacacattgtcaga 18333551  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #11
Raw Score: 30; E-Value: 0.0000003
Query Start/End: Original strand, 378 - 471
Target Start/End: Original strand, 6413443 - 6413536
Alignment:
Q  378 ggtctaacacaaacccacaaaaccgacttatgggattataattaccctcacttataaacacattgtcagatcttcccttatctaatgtgtgact 471  Q
    |||||||||||| ||||||||| || |||||| | | |  ||| ||| ||||||||||||||||||||| || || | |||| |||||| ||||    
T  6413443 ggtctaacacaaccccacaaaatcggcttatgaggtgaggattgcccccacttataaacacattgtcaggtcatctcatatccaatgtgagact 6413536  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7 (Bit Score: 38; Significance: 0.000000000006; HSPs: 9)
Name: chr7
Description:

Target: chr7; HSP #1
Raw Score: 38; E-Value: 0.000000000006
Query Start/End: Original strand, 334 - 447
Target Start/End: Original strand, 26239889 - 26240002
Alignment:
Q  334 ggatcttaaaggagtctctgataacatcttagaaatcaatgtttggtctaacacaaacccacaaaaccgacttatgggattataattaccctcacttata 433  Q
    |||||||  ||||| |||||||| ||||||||||||    ||| |||||||||||| ||||||| |||||||| || | | |  ||| ||| ||||||||    
T  26239889 ggatcttggaggaggctctgataccatcttagaaattgtggttgggtctaacacaaccccacaataccgacttgtgaggtgaggattgcccccacttata 26239988  T
Q  434 aacacattgtcaga 447  Q
    ||||||||||||||    
T  26239989 aacacattgtcaga 26240002  T

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Target: chr7; HSP #2
Raw Score: 38; E-Value: 0.000000000006
Query Start/End: Original strand, 349 - 446
Target Start/End: Original strand, 36277214 - 36277311
Alignment:
Q  349 ctctgataacatcttagaaatcaatgtttggtctaacacaaacccacaaaaccgacttatgggattataattaccctcacttataaacacattgtcag 446  Q
    ||||||||||||||||||||||   ||| || ||||||||| ||||||||| |||||| || | | |  ||| ||| |||||||||||||||||||||    
T  36277214 ctctgataacatcttagaaatcgtggttgggactaacacaaccccacaaaatcgacttgtgaggtgaggattgcccccacttataaacacattgtcag 36277311  T

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Target: chr7; HSP #3
Raw Score: 38; E-Value: 0.000000000006
Query Start/End: Original strand, 349 - 446
Target Start/End: Original strand, 48243425 - 48243522
Alignment:
Q  349 ctctgataacatcttagaaatcaatgtttggtctaacacaaacccacaaaaccgacttatgggattataattaccctcacttataaacacattgtcag 446  Q
    |||||||| ||||||| ||||||  ||| |||||||||||| |||||||||||| ||| |  ||| |  ||| ||| |||||||||||||||||||||    
T  48243425 ctctgataccatcttaaaaatcatggttgggtctaacacaaccccacaaaaccggcttgtaagatgaggattgcccccacttataaacacattgtcag 48243522  T

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Target: chr7; HSP #4
Raw Score: 34; E-Value: 0.000000001
Query Start/End: Original strand, 349 - 446
Target Start/End: Complemental strand, 25620232 - 25620135
Alignment:
Q  349 ctctgataacatcttagaaatcaatgtttggtctaacacaaacccacaaaaccgacttatgggattataattaccctcacttataaacacattgtcag 446  Q
    |||||||| |||||||||||||   ||| || ||||||||| |||||||||||| ||| || | | |  ||| ||| |||||||||||||||||||||    
T  25620232 ctctgataccatcttagaaatcgtggttgggcctaacacaaccccacaaaaccggcttgtgaggtgaggattgcccccacttataaacacattgtcag 25620135  T

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Target: chr7; HSP #5
Raw Score: 32; E-Value: 0.00000002
Query Start/End: Original strand, 417 - 476
Target Start/End: Original strand, 18826544 - 18826603
Alignment:
Q  417 aattaccctcacttataaacacattgtcagatcttcccttatctaatgtgtgactcttaa 476  Q
    |||||||| ||||||||||||||||||||| || || | |||| |||||| |||||||||    
T  18826544 aattacccccacttataaacacattgtcaggtcatctcctatccaatgtgggactcttaa 18826603  T

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Target: chr7; HSP #6
Raw Score: 30; E-Value: 0.0000003
Query Start/End: Original strand, 331 - 400
Target Start/End: Original strand, 5871782 - 5871851
Alignment:
Q  331 aatggatcttaaaggagtctctgataacatcttagaaatcaatgtttggtctaacacaaacccacaaaac 400  Q
    |||||||||||| |||| |||||||| |||||||||||||   ||| || ||||||||| || |||||||    
T  5871782 aatggatcttaacggaggctctgatatcatcttagaaatcgtggttgggactaacacaaccctacaaaac 5871851  T

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Target: chr7; HSP #7
Raw Score: 30; E-Value: 0.0000003
Query Start/End: Original strand, 381 - 446
Target Start/End: Complemental strand, 17202243 - 17202178
Alignment:
Q  381 ctaacacaaacccacaaaaccgacttatgggattataattaccctcacttataaacacattgtcag 446  Q
    ||||||||| |||||||||||| ||| || ||| | |||| ||| |||||||||||| ||||||||    
T  17202243 ctaacacaaccccacaaaaccggcttgtgagatgagaattgcccccacttataaacaaattgtcag 17202178  T

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Target: chr7; HSP #8
Raw Score: 30; E-Value: 0.0000003
Query Start/End: Original strand, 257 - 322
Target Start/End: Original strand, 36575093 - 36575158
Alignment:
Q  257 atataaatagttggtggtccgatagtgaaaacctggtatcaagtgatccaatggatctcggaggaa 322  Q
    |||||||| || ||||||| |||||||||||| || || || ||| |||||||||||| |||||||    
T  36575093 atataaatggtcggtggtcggatagtgaaaacatgatagcatgtggtccaatggatcttggaggaa 36575158  T

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Target: chr7; HSP #9
Raw Score: 30; E-Value: 0.0000003
Query Start/End: Original strand, 331 - 476
Target Start/End: Original strand, 48661526 - 48661670
Alignment:
Q  331 aatggatcttaaaggagtctctgataacatcttagaaatcaatgtttggtctaacacaaacccacaaaaccgacttatgggattataattaccctcactt 430  Q
    ||||| |||||||| || |||||||| ||| |||||||||   ||| |||||||||||| | |||||||||| ||| || | | |  ||| ||| ||| |    
T  48661526 aatggttcttaaag-aggctctgatatcatattagaaatcgtggttgggtctaacacaatctcacaaaaccggcttgtgaggtgaggattgcccccacct 48661624  T
Q  431 ataaacacattgtcagatcttcccttatctaatgtgtgactcttaa 476  Q
    ||||| |||||||||| || || | ||||| ||||| |||||||||    
T  48661625 ataaatacattgtcaggtcatctcctatctgatgtgggactcttaa 48661670  T

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Target: chr2 (Bit Score: 37; Significance: 0.00000000002; HSPs: 7)
Name: chr2
Description:

Target: chr2; HSP #1
Raw Score: 37; E-Value: 0.00000000002
Query Start/End: Original strand, 382 - 446
Target Start/End: Complemental strand, 24396163 - 24396099
Alignment:
Q  382 taacacaaacccacaaaaccgacttatgggattataattaccctcacttataaacacattgtcag 446  Q
    |||||||| |||||||||||||||| |||| | ||||||||||  ||||||||||| ||||||||    
T  24396163 taacacaaccccacaaaaccgacttgtggggtgataattacccctacttataaacatattgtcag 24396099  T

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Target: chr2; HSP #2
Raw Score: 34; E-Value: 0.000000001
Query Start/End: Original strand, 381 - 446
Target Start/End: Original strand, 17854712 - 17854777
Alignment:
Q  381 ctaacacaaacccacaaaaccgacttatgggattataattaccctcacttataaacacattgtcag 446  Q
    ||||||||| |||||||||||||||| || ||| || ||| ||| |||||||||||| ||||||||    
T  17854712 ctaacacaatcccacaaaaccgacttgtgagatgatgattgcccccacttataaacagattgtcag 17854777  T

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Target: chr2; HSP #3
Raw Score: 33; E-Value: 0.000000005
Query Start/End: Original strand, 349 - 445
Target Start/End: Original strand, 15124771 - 15124867
Alignment:
Q  349 ctctgataacatcttagaaatcaatgtttggtctaacacaaacccacaaaaccgacttatgggattataattaccctcacttataaacacattgtca 445  Q
    |||||||| |||||||||||||   ||| |||||||||||| ||||||||||||| || ||   | |  ||| |||||||||||||||||| |||||    
T  15124771 ctctgataccatcttagaaatcgtggttgggtctaacacaaccccacaaaaccgaattgtgaagtgaagattgccctcacttataaacacactgtca 15124867  T

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Target: chr2; HSP #4
Raw Score: 30; E-Value: 0.0000003
Query Start/End: Original strand, 381 - 474
Target Start/End: Complemental strand, 14927166 - 14927073
Alignment:
Q  381 ctaacacaaacccacaaaaccgacttatgggattataattaccctcacttataaacacattgtcagatcttcccttatctaatgtgtgactctt 474  Q
    ||||||||| | |||||| | |||||||| | | |  ||| ||| ||||||||||||||||||||| || || ||||||  |||||||||||||    
T  14927166 ctaacacaaccacacaaagctgacttatgaggtgaggattgcccccacttataaacacattgtcaggtcatctcttatccgatgtgtgactctt 14927073  T

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Target: chr2; HSP #5
Raw Score: 30; E-Value: 0.0000003
Query Start/End: Original strand, 349 - 446
Target Start/End: Original strand, 17854917 - 17855014
Alignment:
Q  349 ctctgataacatcttagaaatcaatgtttggtctaacacaaacccacaaaaccgacttatgggattataattaccctcacttataaacacattgtcag 446  Q
    |||||||| ||| |||||||||   ||| |||||| ||||| |||||||||||| ||| || | | |  ||| |||||||||||||||| ||||||||    
T  17854917 ctctgatatcatattagaaatcgtggttgggtctagcacaaccccacaaaaccggcttgtgaggtgaggattgccctcacttataaacaaattgtcag 17855014  T

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Target: chr2; HSP #6
Raw Score: 30; E-Value: 0.0000003
Query Start/End: Original strand, 383 - 476
Target Start/End: Complemental strand, 37840399 - 37840306
Alignment:
Q  383 aacacaaacccacaaaaccgacttatgggattataattaccctcacttataaacacattgtcagatcttcccttatctaatgtgtgactcttaa 476  Q
    ||||||| |||||||||||| ||| || | | || ||| ||  ||||||||||||||||||||| || || | |||| |||||| |||||||||    
T  37840399 aacacaaccccacaaaaccggcttgtgaggtgatgattgcctccacttataaacacattgtcaggtcatctcctatccaatgtgggactcttaa 37840306  T

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Target: chr2; HSP #7
Raw Score: 30; E-Value: 0.0000003
Query Start/End: Original strand, 349 - 446
Target Start/End: Original strand, 40379432 - 40379529
Alignment:
Q  349 ctctgataacatcttagaaatcaatgtttggtctaacacaaacccacaaaaccgacttatgggattataattaccctcacttataaacacattgtcag 446  Q
    |||||||| |||||||||||||   ||| || ||||||||| |||||||||||| ||| || | | |  ||| ||| |||||||||||||| ||||||    
T  40379432 ctctgataccatcttagaaatcgtggttgggcctaacacaaccccacaaaaccggcttgtgaggtgaggattgcccccacttataaacacactgtcag 40379529  T

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Target: scaffold0692 (Bit Score: 35; Significance: 0.0000000003; HSPs: 1)
Name: scaffold0692
Description:

Target: scaffold0692; HSP #1
Raw Score: 35; E-Value: 0.0000000003
Query Start/End: Original strand, 349 - 447
Target Start/End: Original strand, 5742 - 5840
Alignment:
Q  349 ctctgataacatcttagaaatcaatgtttggtctaacacaaacccacaaaaccgacttatgggattataattaccctcacttataaacacattgtcaga 447  Q
    |||||||| |||||||||||||   ||| || ||||||||| ||| |||||||| ||| || ||| |  ||| ||| ||||||||||||||||||||||    
T  5742 ctctgataccatcttagaaatcgtggttgggcctaacacaaccccgcaaaaccggcttgtgagatgaggattgcccccacttataaacacattgtcaga 5840  T

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Target: chr1 (Bit Score: 32; Significance: 0.00000002; HSPs: 5)
Name: chr1
Description:

Target: chr1; HSP #1
Raw Score: 32; E-Value: 0.00000002
Query Start/End: Original strand, 381 - 476
Target Start/End: Original strand, 26173476 - 26173571
Alignment:
Q  381 ctaacacaaacccacaaaaccgacttatgggattataattaccctcacttataaacacattgtcagatcttcccttatctaatgtgtgactcttaa 476  Q
    ||||||||| |||||||||||| ||||   | | | |||| ||| |||||||||||||||||||||| | || | ||||| ||||| |||||||||    
T  26173476 ctaacacaaccccacaaaaccggcttacaaggtgagaattgcccccacttataaacacattgtcagaccatctcatatctgatgtgggactcttaa 26173571  T

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Target: chr1; HSP #2
Raw Score: 31; E-Value: 0.00000008
Query Start/End: Original strand, 349 - 447
Target Start/End: Complemental strand, 51589322 - 51589224
Alignment:
Q  349 ctctgataacatcttagaaatcaatgtttggtctaacacaaacccacaaaaccgacttatgggattataattaccctcacttataaacacattgtcaga 447  Q
    |||||||| ||| |||||||||   ||| || ||||||||| |||||||||||| ||| || | | |  ||| |||||||||||||||| |||||||||    
T  51589322 ctctgataccatattagaaatcgtggttaggcctaacacaaccccacaaaaccggcttgtgaggtgaggattgccctcacttataaacaaattgtcaga 51589224  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #3
Raw Score: 30; E-Value: 0.0000003
Query Start/End: Original strand, 331 - 476
Target Start/End: Original strand, 2859598 - 2859742
Alignment:
Q  331 aatggatcttaaaggagtctctgataacatcttagaaatcaatgtttggtctaacacaaacccacaaaaccgacttatgggattataattaccctcactt 430  Q
    |||||||||| ||| || |||| ||| |||||||||||| |  ||| || ||||||||| | |||||||||| ||| || | | |  ||||||| ||||     
T  2859598 aatggatcttgaag-aggctctaataccatcttagaaatgatggttggggctaacacaacctcacaaaaccggcttgtgaggtgaggattacccccacta 2859696  T
Q  431 ataaacacattgtcagatcttcccttatctaatgtgtgactcttaa 476  Q
    ||||||||||||||||| | || | ||||  ||||| |||||||||    
T  2859697 ataaacacattgtcagaccatcacctatccgatgtgagactcttaa 2859742  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #4
Raw Score: 30; E-Value: 0.0000003
Query Start/End: Original strand, 353 - 446
Target Start/End: Original strand, 4112998 - 4113091
Alignment:
Q  353 gataacatcttagaaatcaatgtttggtctaacacaaacccacaaaaccgacttatgggattataattaccctcacttataaacacattgtcag 446  Q
    |||| |||||||||||||   ||| || ||||||||| |||||||||||| ||| || | | |  ||| ||| |||||||||||||||||||||    
T  4112998 gataccatcttagaaatcgtggttgggcctaacacaaccccacaaaaccggcttgtgaggtgaggattgcccccacttataaacacattgtcag 4113091  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #5
Raw Score: 30; E-Value: 0.0000003
Query Start/End: Original strand, 359 - 476
Target Start/End: Original strand, 25145483 - 25145600
Alignment:
Q  359 atcttagaaatcaatgtttggtctaacacaaacccacaaaaccgacttatgggattataattaccctcacttataaacacattgtcagatcttcccttat 458  Q
    ||||||||||||   ||| |||||||||||| | |||||||||||||| || | | |  ||| ||| |||| ||||||||||||||||| | || | |||    
T  25145483 atcttagaaatcgtggttgggtctaacacaacctcacaaaaccgacttgtgaggtgaggattgcccccactaataaacacattgtcagaccatcacctat 25145582  T
Q  459 ctaatgtgtgactcttaa 476  Q
    |  ||||| |||||||||    
T  25145583 ccgatgtgagactcttaa 25145600  T

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Target: scaffold0129 (Bit Score: 31; Significance: 0.00000008; HSPs: 1)
Name: scaffold0129
Description:

Target: scaffold0129; HSP #1
Raw Score: 31; E-Value: 0.00000008
Query Start/End: Original strand, 349 - 447
Target Start/End: Complemental strand, 14399 - 14301
Alignment:
Q  349 ctctgataacatcttagaaatcaatgtttggtctaacacaaacccacaaaaccgacttatgggattataattaccctcacttataaacacattgtcaga 447  Q
    |||||||| ||||||||||| |   ||| || ||||||||| |||||||||||| ||| || | | || |||  || ||||||||||||||||||||||    
T  14399 ctctgataccatcttagaaaacgtggttgggcctaacacaaccccacaaaaccggcttgtgaggtgatgattgtccccacttataaacacattgtcaga 14301  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: scaffold0048 (Bit Score: 30; Significance: 0.0000003; HSPs: 1)
Name: scaffold0048
Description:

Target: scaffold0048; HSP #1
Raw Score: 30; E-Value: 0.0000003
Query Start/End: Original strand, 349 - 406
Target Start/End: Complemental strand, 81938 - 81881
Alignment:
Q  349 ctctgataacatcttagaaatcaatgtttggtctaacacaaacccacaaaaccgactt 406  Q
    |||||||| |||||||||||||   ||| || ||||||||| ||||||||||||||||    
T  81938 ctctgataccatcttagaaatcgtggttgggcctaacacaaccccacaaaaccgactt 81881  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]



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