View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF4600-Insertion-10 (Length: 306)
Name: NF4600-Insertion-10
Description: NF4600
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF4600-Insertion-10 |
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Alignment Details
Target: chr5 (Bit Score: 265; Significance: 1e-148; HSPs: 1)
Name: chr5
Description:
Target: chr5; HSP #1
Raw Score: 265; E-Value: 1e-148
Query Start/End: Original strand, 7 - 303
Target Start/End: Original strand, 34670789 - 34671085
Alignment:
| Q |
7 |
aaataaaattctttctcttgaagatgatggaggggtccgtgtgtcagatgataatggtatggcttcggtagctaaatgttactttgatgagctgtttcga |
106 |
Q |
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| T |
34670789 |
aaataaaattctttctctagaagatgatgcaggggtccgtgtgtcagatgataatgatatggcttcagtagctaaatgttactttgatgagctgtttcga |
34670888 |
T |
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| Q |
107 |
gctaaacaaagcacaagagatccggtgattaatgttataaataaagtcatttccgaggaggataatcatcaacttacaacaccttttttgatagaagaat |
206 |
Q |
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| T |
34670889 |
gctaaacaaagcacaagagatccggtgatcaatgttataaataaagtcatttccgaggaggataatcatcaacttacaacaccttttttgatagaagaat |
34670988 |
T |
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| Q |
207 |
ttaaggaggcaatgttctccatgcaagccgaaaaatgcccaggtcccgacggatttaatcctggtttttaccaacattttttgcaactgtgcagccc |
303 |
Q |
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| T |
34670989 |
ttaaggaggcaatgttctcaatgcaagccgaaaaatgcccaggtcctgacggatttaatcctggtttttaccaacatttttggcaactgtgcagccc |
34671085 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3 (Bit Score: 39; Significance: 0.0000000000004; HSPs: 1)
Name: chr3
Description:
Target: chr3; HSP #1
Raw Score: 39; E-Value: 0.0000000000004
Query Start/End: Original strand, 164 - 270
Target Start/End: Original strand, 34932439 - 34932545
Alignment:
| Q |
164 |
gaggataatcatcaacttacaacaccttttttgatagaagaatttaaggaggcaatgttctccatgcaagccgaaaaatgcccaggtcccgacggattta |
263 |
Q |
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| T |
34932439 |
gaggataatgctcaactaacaactcccttttgcatagaagaatttaaagaagcaatgttttccatgcaacctgacaaatgtccaggtcctgatggattca |
34932538 |
T |
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| Q |
264 |
atcctgg |
270 |
Q |
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| T |
34932539 |
atcctgg |
34932545 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr1 (Bit Score: 33; Significance: 0.000000002; HSPs: 1)
Name: chr1
Description:
Target: chr1; HSP #1
Raw Score: 33; E-Value: 0.000000002
Query Start/End: Original strand, 199 - 287
Target Start/End: Complemental strand, 25597563 - 25597475
Alignment:
| Q |
199 |
agaagaatttaaggaggcaatgttctccatgcaagccgaaaaatgcccaggtcccgacggatttaatcctggtttttaccaacattttt |
287 |
Q |
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| T |
25597563 |
agaagagtttaaagaagcaatgttctctatgcaacctgataaatgccctggccctgatggttttaatccggggttttaccaacattttt |
25597475 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr7 (Bit Score: 31; Significance: 0.00000003; HSPs: 1)
Name: chr7
Description:
Target: chr7; HSP #1
Raw Score: 31; E-Value: 0.00000003
Query Start/End: Original strand, 221 - 287
Target Start/End: Complemental strand, 3965073 - 3965007
Alignment:
| Q |
221 |
ttctccatgcaagccgaaaaatgcccaggtcccgacggatttaatcctggtttttaccaacattttt |
287 |
Q |
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| T |
3965073 |
ttctccatgcaagcagataaatgtccaggtccagatggttttaatccaggtttctatcaacattttt |
3965007 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4 (Bit Score: 31; Significance: 0.00000003; HSPs: 1)
Name: chr4
Description:
Target: chr4; HSP #1
Raw Score: 31; E-Value: 0.00000003
Query Start/End: Original strand, 221 - 287
Target Start/End: Complemental strand, 26431972 - 26431906
Alignment:
| Q |
221 |
ttctccatgcaagccgaaaaatgcccaggtcccgacggatttaatcctggtttttaccaacattttt |
287 |
Q |
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| T |
26431972 |
ttctccatgcaagcagataaatgtccaggtccagatggttttaatccaggtttctatcaacattttt |
26431906 |
T |
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