View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF4600-Insertion-2 (Length: 894)
Name: NF4600-Insertion-2
Description: NF4600
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF4600-Insertion-2 |
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Alignment Details
Target: chr7 (Bit Score: 218; Significance: 1e-119; HSPs: 3)
Name: chr7
Description:
Target: chr7; HSP #1
Raw Score: 218; E-Value: 1e-119
Query Start/End: Original strand, 586 - 851
Target Start/End: Complemental strand, 26887116 - 26886852
Alignment:
| Q |
586 |
ttctgtgacaagaaaacatgatttgtgtgtgctagaactcatcataaaaagaatactatttcctataaaatcatatccctaccaccttctctacttcata |
685 |
Q |
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| T |
26887116 |
ttctgtgacaagaaaacatgatttgtgtgcgctagaactcatcataaaaagaatactatttcctataaaatcatatctccaccaccttctctacttcata |
26887017 |
T |
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| Q |
686 |
ttcattttctaagttactcactttcttccattactattattgtttaccctttcttcttcatttagcttatgattttatttatactagcagaatacccgtg |
785 |
Q |
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| T |
26887016 |
ttcattt-ctaagttactcactttcttccattattattattgtttaccctttcttcttcatttagcttatgattttatttataccagcagaatacccgtg |
26886918 |
T |
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| Q |
786 |
tatatgcacaagtgagcgcattgtgctctttttcttgtgaaaggaaggtgcaactctgtataaatt |
851 |
Q |
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| T |
26886917 |
tatacgcacaagtgagcgcattgtgctctttttcttgtgaaagaaagttgcaattgtgtataaatt |
26886852 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr7; HSP #2
Raw Score: 205; E-Value: 1e-111
Query Start/End: Original strand, 8 - 276
Target Start/End: Complemental strand, 26887540 - 26887272
Alignment:
| Q |
8 |
attacttttccggttttcaaatgtaataaaaaatatgttcaatgtagtagaaaaatcattcaaataaaccaaacaacgtgcaaggcataaatatacgtgt |
107 |
Q |
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| T |
26887540 |
attacttttccggttttcaaatgtaataaaaaatatgttcaatgtagtagaaaaatcattcaaataaaccaaacaacctgcaaggcataaatatatgtgt |
26887441 |
T |
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| Q |
108 |
ttggtaaaattttaacttaggaaatagaatttaacatccttctcatagtatttgtcaaaaagaacattgttctcgcatatttcctttgataactagtcat |
207 |
Q |
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| T |
26887440 |
ttggtaaaattttaacttaggaaatagaatttaacatccttctcatagtatttgtcaaaaacaacattgttctcgcatatttcctttgataactagtcat |
26887341 |
T |
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| Q |
208 |
nnnnnnnntattgatcgtattaggtgacaggagtgctagcgatacaccttttaacatcacttttcaaca |
276 |
Q |
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| T |
26887340 |
aaaaaaaatattgattggattaggtgacaggagtgctaacgacacattttttaacatcacttttaaaca |
26887272 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr7; HSP #3
Raw Score: 87; E-Value: 3e-41
Query Start/End: Original strand, 426 - 527
Target Start/End: Complemental strand, 26887277 - 26887175
Alignment:
| Q |
426 |
taaacatgatgcgtagacttgcaagtatgcatgagaactacataaccactaacaacattcaaattcctgcgtta-aaaataaataagaaacactgtcatc |
524 |
Q |
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|||||||||||||||||||||||||||||||||||||| |||||||| |||||||||||||||||||||||||| ||||||||||||||||||||||||| |
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| T |
26887277 |
taaacatgatgcgtagacttgcaagtatgcatgagaaccacataacctctaacaacattcaaattcctgcgttaaaaaataaataagaaacactgtcatc |
26887178 |
T |
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| Q |
525 |
att |
527 |
Q |
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||| |
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| T |
26887177 |
att |
26887175 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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