View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF4600-Insertion-4 (Length: 805)
Name: NF4600-Insertion-4
Description: NF4600
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF4600-Insertion-4 |
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| [»] chr6 (2 HSPs) |
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Alignment Details
Target: chr6 (Bit Score: 714; Significance: 0; HSPs: 2)
Name: chr6
Description:
Target: chr6; HSP #1
Raw Score: 714; E-Value: 0
Query Start/End: Original strand, 11 - 805
Target Start/End: Original strand, 22687393 - 22688187
Alignment:
| Q |
11 |
tcaacaaagttgaggaaaatgattgtaagtaagagaaagaagaagaaaaataagggtctttttgttttgccacttcattcaagagtaacaggagcaagat |
110 |
Q |
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|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
22687393 |
tcaacaaagttgaggaaaatgattgtaagtaagagaaagaagaagaaaaataagggtctttttgttttgccacttcattcaagagtaacaggagcaagat |
22687492 |
T |
|
| Q |
111 |
atccttatatttggataagtatagcgaaagagaatggttggaatgttttggttgatgcatgtgcattaggaccaaaagacatggattgttttggtctctc |
210 |
Q |
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||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||||||||||||||||||||| || |
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| T |
22687493 |
atccttatatttggataagtatagcgaaagagaatggttggaatgttttggttgatgcatgtgcattaggaccgaaagacatggattgttttggtctttc |
22687592 |
T |
|
| Q |
211 |
actttttcaaccggattttcttatttgttcttgttataaagttttcggagaaaacccttctggatttggttgcctttttatcaagaaaagtgctacgtcg |
310 |
Q |
| |
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|||||||||||| ||||||||||| |||||||||||||||||||| |||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
22687593 |
actttttcaaccagattttcttatatgttcttgttataaagtttttggagaaaacccttctggatttggttgcctttttatcaagaaaagtgctacgtcg |
22687692 |
T |
|
| Q |
311 |
attttggaaacaaattcttctgtaggaatagtgaaccttgtgcaagnnnnnnntcagcaagattcgatacttaccttacatttagatgaagaagaaccat |
410 |
Q |
| |
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|||||||||||||||||||||||||||||||||||||||||||||| |||||||||||||||||||||||||||||||| ||||||||||||| |
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| T |
22687693 |
attttggaaacaaattcttctgtaggaatagtgaaccttgtgcaagaaaaaaagcagcaagattcgatacttaccttacatttagacgaagaagaaccat |
22687792 |
T |
|
| Q |
411 |
tttatatgacatctttgtctagtatgatacaaacatcgcaacctgcaaaattcgtagaaggagaatcttctgagattaagatcttagaggcaccaagtgt |
510 |
Q |
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||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |||||||||||||||| |
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| T |
22687793 |
tttatatgacatctttgtctagtatgatacaaacatcgcaacctgcaaaattcgtagaaggagaatcttctgagattaagatcgtagaggcaccaagtgt |
22687892 |
T |
|
| Q |
511 |
gtcaaaaccatctgaaatttgtgaaattgaggaggtggaaaagcaagttcaaatccatgaaaagggtgttaaagaaagtgataaaaatgagaactttgat |
610 |
Q |
| |
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|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |||||||| |
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| T |
22687893 |
gtcaaaaccatctgaaatttgtgaaattgaggaggtggaaaagcaagttcaaatccatgaaaagggtgttaaagaaagtgataaaaatgaacactttgat |
22687992 |
T |
|
| Q |
611 |
attcaatgtaggtgcttagatgaagtggattcattaggattgttactgatcaatgatcgcgcgaggtacttgataaactggttggtgaattcgatgttga |
710 |
Q |
| |
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||| ||||||||||||||||| |||||||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
22687993 |
attgaatgtaggtgcttagatcaagtggattctttaggattgttactgatcaatgatcgcgcgaggtacttgataaactggttggtgaattcgatgttga |
22688092 |
T |
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| Q |
711 |
agcttaagcatcctaacacagaaggggtttctctagtgaagatttatggtccaaaagttaaatttgatagaggacctgcaattgcattcaatata |
805 |
Q |
| |
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||||||||||||||||||||||||||||||||||||||| |||||||||||||||||| |||||||||||||||||||||||||||||||||||| |
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| T |
22688093 |
agcttaagcatcctaacacagaaggggtttctctagtgacgatttatggtccaaaagtaaaatttgatagaggacctgcaattgcattcaatata |
22688187 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr6; HSP #2
Raw Score: 710; E-Value: 0
Query Start/End: Original strand, 11 - 805
Target Start/End: Complemental strand, 22751675 - 22750881
Alignment:
| Q |
11 |
tcaacaaagttgaggaaaatgattgtaagtaagagaaagaagaagaaaaataagggtctttttgttttgccacttcattcaagagtaacaggagcaagat |
110 |
Q |
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|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
22751675 |
tcaacaaagttgaggaaaatgattgtaagtaagagaaagaagaagaaaaataagggtctttttgttttgccacttcattcaagagtaacaggagcaagat |
22751576 |
T |
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| Q |
111 |
atccttatatttggataagtatagcgaaagagaatggttggaatgttttggttgatgcatgtgcattaggaccaaaagacatggattgttttggtctctc |
210 |
Q |
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||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||||||||||||||||| ||| || |
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| T |
22751575 |
atccttatatttggataagtatagcgaaagagaatggttggaatgttttggttgatgcatgtgcattaggaccgaaagacatggattgttttgttctttc |
22751476 |
T |
|
| Q |
211 |
actttttcaaccggattttcttatttgttcttgttataaagttttcggagaaaacccttctggatttggttgcctttttatcaagaaaagtgctacgtcg |
310 |
Q |
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|||||||||||| ||||||||||| |||||||||||||||||||| |||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
22751475 |
actttttcaaccagattttcttatatgttcttgttataaagtttttggagaaaacccttctggatttggttgcctttttatcaagaaaagtgctacgtcg |
22751376 |
T |
|
| Q |
311 |
attttggaaacaaattcttctgtaggaatagtgaaccttgtgcaagnnnnnnntcagcaagattcgatacttaccttacatttagatgaagaagaaccat |
410 |
Q |
| |
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|||||||||||||||||||||||||||||||||||||||||||||| |||||||||||||||||||||||||||||||| ||||||||||||| |
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| T |
22751375 |
attttggaaacaaattcttctgtaggaatagtgaaccttgtgcaagaaaaaaagcagcaagattcgatacttaccttacatttagacgaagaagaaccat |
22751276 |
T |
|
| Q |
411 |
tttatatgacatctttgtctagtatgatacaaacatcgcaacctgcaaaattcgtagaaggagaatcttctgagattaagatcttagaggcaccaagtgt |
510 |
Q |
| |
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||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |||||||||||||||| |
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| T |
22751275 |
tttatatgacatctttgtctagtatgatacaaacatcgcaacctgcaaaattcgtagaaggagaatcttctgagattaagatcgtagaggcaccaagtgt |
22751176 |
T |
|
| Q |
511 |
gtcaaaaccatctgaaatttgtgaaattgaggaggtggaaaagcaagttcaaatccatgaaaagggtgttaaagaaagtgataaaaatgagaactttgat |
610 |
Q |
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|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |||||||| |
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| T |
22751175 |
gtcaaaaccatctgaaatttgtgaaattgaggaggtggaaaagcaagttcaaatccatgaaaagggtgttaaagaaagtgataaaaatgaacactttgat |
22751076 |
T |
|
| Q |
611 |
attcaatgtaggtgcttagatgaagtggattcattaggattgttactgatcaatgatcgcgcgaggtacttgataaactggttggtgaattcgatgttga |
710 |
Q |
| |
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||| ||||||||||||||||| |||||||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
22751075 |
attgaatgtaggtgcttagatcaagtggattctttaggattgttactgatcaatgatcgcgcgaggtacttgataaactggttggtgaattcgatgttga |
22750976 |
T |
|
| Q |
711 |
agcttaagcatcctaacacagaaggggtttctctagtgaagatttatggtccaaaagttaaatttgatagaggacctgcaattgcattcaatata |
805 |
Q |
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||||||||||||||||||||||||||||||||||||||| |||||||||||||||||| |||||||||||||||||||||||||||||||||||| |
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| T |
22750975 |
agcttaagcatcctaacacagaaggggtttctctagtgacgatttatggtccaaaagtaaaatttgatagaggacctgcaattgcattcaatata |
22750881 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr1 (Bit Score: 123; Significance: 9e-63; HSPs: 1)
Name: chr1
Description:
Target: chr1; HSP #1
Raw Score: 123; E-Value: 9e-63
Query Start/End: Original strand, 50 - 298
Target Start/End: Original strand, 45957934 - 45958179
Alignment:
| Q |
50 |
aagaagaaaaataagggtctttttgttttgccacttcattcaagagtaacaggagcaagatatccttatatttggataagtatagcgaaagagaatggtt |
149 |
Q |
| |
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|||||||||||| ||||||||||| || |||||||||||||| |||||||||||||||||||||||| | ||||| || | ||| |||||||||||| |
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| T |
45957934 |
aagaagaaaaat---ggtctttttgtatttccacttcattcaagggtaacaggagcaagatatccttatctatggatgagaacagcacaagagaatggtt |
45958030 |
T |
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| Q |
150 |
ggaatgttttggttgatgcatgtgcattaggaccaaaagacatggattgttttggtctctcactttttcaaccggattttcttatttgttcttgttataa |
249 |
Q |
| |
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|| |||||||| ||||||| |||||||||||||||||||||||||| ||||||||||||| || |||||||| |||||||| |||||||| | || || |
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| T |
45958031 |
ggcatgttttgattgatgcttgtgcattaggaccaaaagacatggacagttttggtctctctctatttcaaccagattttctcatttgttcattctacaa |
45958130 |
T |
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| Q |
250 |
agttttcggagaaaacccttctggatttggttgcctttttatcaagaaa |
298 |
Q |
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|||||| |||||||| || ||||| ||||||||||||||| |||||||| |
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| T |
45958131 |
agtttttggagaaaatccatctggttttggttgcctttttgtcaagaaa |
45958179 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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