View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF4600-Insertion-5 (Length: 739)
Name: NF4600-Insertion-5
Description: NF4600
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF4600-Insertion-5 |
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Alignment Details
Target: chr8 (Bit Score: 378; Significance: 0; HSPs: 3)
Name: chr8
Description:
Target: chr8; HSP #1
Raw Score: 378; E-Value: 0
Query Start/End: Original strand, 8 - 533
Target Start/End: Original strand, 17120842 - 17121356
Alignment:
| Q |
8 |
aattttaagtaacacttatgagaaggagagagtaataaataagtatttactaaccaggctgcaataaatctaagacagcctgtggcataggagtgtttgg |
107 |
Q |
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| T |
17120842 |
aattttaaataacacttatgagaaagagagagtaataaataagtatttactaaccaggctgcaataaatctaagacagcctgaggcataggagtgtttgg |
17120941 |
T |
|
| Q |
108 |
ccaaattgatttccaatactctttcccagattgtgctgcattgattcctaacagggccaactgtcaagtagtattatatgtgtcaatgttattagaacaa |
207 |
Q |
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| T |
17120942 |
ccaaattgatttccaatactctttcccagattgtgcttcattgattcctaacagggtcaactgtcaagtagtattat-tgtgtcaatgttattagaacaa |
17121040 |
T |
|
| Q |
208 |
tgattaaatcaacaaaacataaagttcttgtnnnnnnnnnnnnnnnnnncacataaaatttttt-aattattaaattacaaacggaattatttaatgtat |
306 |
Q |
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| T |
17121041 |
tgattaaatcaacaaaacataaagttcttgttaaaaaaaaaa-------cacacaaagtttttttaattattaaattacaaacggaattatttaatgtat |
17121133 |
T |
|
| Q |
307 |
ttgacataaggactaatggaannnnnnngggagagtttataaaaacaacttataatatgtctataaattggttcagattatttccataaataaatatata |
406 |
Q |
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| T |
17121134 |
ttgacataaggactaatggaatttttttgggaaagtttataaaaacaacttataatatgtctataaattggttcagattatttccataa----atatata |
17121229 |
T |
|
| Q |
407 |
caaacaaaaggatttgattataaattttattacataaaaacaattatatgatagccgtttgcttaattaaactatttaattaagaaagatcaaaatatca |
506 |
Q |
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| T |
17121230 |
caaacaaaaggatttgattataaattttattacataaaaacaattatatgatagccgtttgcttaattaaactatttaattaagaaagatcaaaatatta |
17121329 |
T |
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| Q |
507 |
ttgaaaaagtaatatttagcactttat |
533 |
Q |
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| T |
17121330 |
ttgaaaaagtaatatttagcactttat |
17121356 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr8; HSP #2
Raw Score: 61; E-Value: 8e-26
Query Start/End: Original strand, 679 - 739
Target Start/End: Original strand, 17121517 - 17121577
Alignment:
| Q |
679 |
aagttgaaacaacccaatcatattgcttacacaaaatagaacgaaaacaaagagacgtgtg |
739 |
Q |
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| T |
17121517 |
aagttgaaacaacccaatcatattgcttacacaaaatagaacgaaaacaaagagacgtgtg |
17121577 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr8; HSP #3
Raw Score: 52; E-Value: 2e-20
Query Start/End: Original strand, 52 - 155
Target Start/End: Complemental strand, 17106074 - 17105971
Alignment:
| Q |
52 |
atttactaaccaggctgcaataaatctaagacagcctgtggcataggagtgtttggccaaattgatttccaatactctttcccagattgtgctgcattga |
151 |
Q |
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|||||||||||||||||||| ||||| ||| ||||| ||||||||||||||||||||||| | ||||||||| |||| ||| ||||||| ||||||| |
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| T |
17106074 |
atttactaaccaggctgcaacaaatccgagagagccttaggcataggagtgtttggccaaatggttttccaataatcttcccccgattgtgaagcattga |
17105975 |
T |
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| Q |
152 |
ttcc |
155 |
Q |
| |
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|||| |
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| T |
17105974 |
ttcc |
17105971 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4 (Bit Score: 36; Significance: 0.00000000007; HSPs: 2)
Name: chr4
Description:
Target: chr4; HSP #1
Raw Score: 36; E-Value: 0.00000000007
Query Start/End: Original strand, 338 - 373
Target Start/End: Original strand, 17976755 - 17976790
Alignment:
| Q |
338 |
agagtttataaaaacaacttataatatgtctataaa |
373 |
Q |
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| T |
17976755 |
agagtttataaaaacaacttataatatgtctataaa |
17976790 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4; HSP #2
Raw Score: 32; E-Value: 0.00000002
Query Start/End: Original strand, 338 - 373
Target Start/End: Complemental strand, 17976846 - 17976811
Alignment:
| Q |
338 |
agagtttataaaaacaacttataatatgtctataaa |
373 |
Q |
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| T |
17976846 |
agagtttataaaaacaacttataacatgtctataaa |
17976811 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr2 (Bit Score: 32; Significance: 0.00000002; HSPs: 1)
Name: chr2
Description:
Target: chr2; HSP #1
Raw Score: 32; E-Value: 0.00000002
Query Start/End: Original strand, 338 - 373
Target Start/End: Original strand, 3070509 - 3070544
Alignment:
| Q |
338 |
agagtttataaaaacaacttataatatgtctataaa |
373 |
Q |
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|||||||||||||||||||||||| ||||||||||| |
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| T |
3070509 |
agagtttataaaaacaacttataacatgtctataaa |
3070544 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr1 (Bit Score: 31; Significance: 0.00000007; HSPs: 1)
Name: chr1
Description:
Target: chr1; HSP #1
Raw Score: 31; E-Value: 0.00000007
Query Start/End: Original strand, 338 - 376
Target Start/End: Original strand, 4553265 - 4553303
Alignment:
| Q |
338 |
agagtttataaaaacaacttataatatgtctataaattg |
376 |
Q |
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|||| |||||||||||||||||||||| ||||||||||| |
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| T |
4553265 |
agagcttataaaaacaacttataatatttctataaattg |
4553303 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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