View Alignment

This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.

Legend
 Query
 Query hiting target  Query hiting target's complemental strand
 Query's complemental strand hiting target  Query's complemental strand hiting target's complemental strand

Alignment Overview

Query: NF4600-Insertion-7 (Length: 653)

Name: NF4600-Insertion-7
Description: NF4600
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)


[»] NF4600-Insertion-7
NF4600-Insertion-7
[»] chr8 (1 HSPs)
chr8 (8-653)||(43450474-43451119)


Alignment Details
Target: chr8 (Bit Score: 618; Significance: 0; HSPs: 1)
Name: chr8
Description:

Target: chr8; HSP #1
Raw Score: 618; E-Value: 0
Query Start/End: Original strand, 8 - 653
Target Start/End: Complemental strand, 43451119 - 43450474
Alignment:
Q  8 gtgttgtccaatattttgaagattttaggggatggaggactcttggagagactctttgaggatataacagcgcgagggaggatatgctgctcgaactgct 107  Q
    ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  43451119 gtgttgtccaatattttgaagattttaggggatggaggactcttggagagactctttgaggatataacagcgcgagggaggatatgctgctcgaactgct 43451020  T
Q  108 gctcaaaagttcaactgatgtatccctttcggaccacattggctgcaggaatcaatagaaaaggaaaagtaaatgaggaaatgatcatgaagtgcatgtg 207  Q
    |||||||| |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||||||    
T  43451019 gctcaaaaattcaactgatgtatccctttcggaccacattggctgcaggaatcaatagaaaaggaaaagtaaatgaggaaatgatcatgaaatgcatgtg 43450920  T
Q  208 cgttaaaccatcaaaccaaaatgcaaagaaactcctagttttctccacaatcacattttccattctacctagctacgccaatatcaacagacctcagtgc 307  Q
    ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||||||||||||||||||||||||| ||||||||||    
T  43450919 cgttaaaccatcaaaccaaaatgcaaagaaactcctagttttctccacaatcacattttcctttctacctagctacgccaatatcaacacacctcagtgc 43450820  T
Q  308 aaatacaattttgttttctagctattataggaaacaaagtgtcaccaaacaaaaatcatccgttggtaccggagaaaatcacggaccatgactatatgca 407  Q
    |||||||||||||||||||||||||||||||||||||||||||||||||||||| |||||||||||||||||||||||||||||||||||||||||||||    
T  43450819 aaatacaattttgttttctagctattataggaaacaaagtgtcaccaaacaaaagtcatccgttggtaccggagaaaatcacggaccatgactatatgca 43450720  T
Q  408 caaacaactaacagcaaattttgagcagtccaatttaaatttcaggaggccttaattaaaatcaaagaggccaataaaatttccaaaattgacctaattc 507  Q
    ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  43450719 caaacaactaacagcaaattttgagcagtccaatttaaatttcaggaggccttaattaaaatcaaagaggccaataaaatttccaaaattgacctaattc 43450620  T
Q  508 ttgttaacttcattctagaaaatttaacaagaaaccagacaaatccttcacaacactgagttgaagtacaagaaatcaatctttaggttcacttttatgt 607  Q
    ||||||||||||||||||||||||||||||||||||| |||||||||||||||||||||||||||| |||||||||||||||||||||||||||||||||    
T  43450619 ttgttaacttcattctagaaaatttaacaagaaaccaaacaaatccttcacaacactgagttgaagcacaagaaatcaatctttaggttcacttttatgt 43450520  T
Q  608 taaaatcccagttgataaaaaattgaacgaacccaatgaaattaac 653  Q
    ||||||||||||||||||||||||||||||||||||||||||||||    
T  43450519 taaaatcccagttgataaaaaattgaacgaacccaatgaaattaac 43450474  T

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