View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF4600-Insertion-8 (Length: 514)
Name: NF4600-Insertion-8
Description: NF4600
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF4600-Insertion-8 |
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| [»] chr7 (1 HSPs) |
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Alignment Details
Target: chr7 (Bit Score: 405; Significance: 0; HSPs: 1)
Name: chr7
Description:
Target: chr7; HSP #1
Raw Score: 405; E-Value: 0
Query Start/End: Original strand, 17 - 514
Target Start/End: Complemental strand, 36424812 - 36424315
Alignment:
| Q |
17 |
ttttaagatctctgataaataaaactgatgagacnnnnnnnnaaacgactcttatgtttaatcaatcataaatttcatacacttatttaacattttattt |
116 |
Q |
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|||||||||||||||||||||||||||||||||| |||||| |||||||||||||||||||||||||| |||||||||||||||||||||||| |
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| T |
36424812 |
ttttaagatctctgataaataaaactgatgagacttttttttaaacgattcttatgtttaatcaatcataaattttatacacttatttaacattttattt |
36424713 |
T |
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| Q |
117 |
tctctttatttctcttcctaccacaccaactacacatcatatcaaacacatcacttttgttatatcatctctttcaatgtgtcgattgattttgtgtgtc |
216 |
Q |
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| T |
36424712 |
tctctttatttctcttcctatcacaccaactacacatcatatcaaacacatcacttttgttatatcatctctttcaatgtgtcgattgattttgtgtgtc |
36424613 |
T |
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| Q |
217 |
tatcaaannnnnnnccttttcaaaaattaaaattaaagatattaatagaaatgaaaattggccaaatccaaatgaatttggtttacaatgggatcaggag |
316 |
Q |
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|||||| |||||||||||||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
36424612 |
tatcaattttttttccttttcaaaaattaacattaaagatattaatagaaatgaaaattggccaaatccaaatgaatttggtttacaatgggatcaggag |
36424513 |
T |
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| Q |
317 |
gttcagatagtaaatatctactaggctccgtaatggcattcctagcaaggtaatgggcgaccgaataacctcttcttcctacaagaagaaatttgctttt |
416 |
Q |
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|||||||||||||||||||||||||||||| |||||||||||||||||||||||||||||||||||||||||||| |||||||||||||||||||| ||| |
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| T |
36424512 |
gttcagatagtaaatatctactaggctccgaaatggcattcctagcaaggtaatgggcgaccgaataacctcttcatcctacaagaagaaatttgccttt |
36424413 |
T |
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| Q |
417 |
cacacatctatgatttgctctctggcatcctaaactgacgaaaatactccggcgggggttaacttatgtttggagaacctttaagtcggttaagtgtc |
514 |
Q |
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| T |
36424412 |
cacacatctatgattttctctttggcatcctaaactgacgaaaatactctggcggcggttaacttatgtttggagaacctttaagtcggttaagtgtc |
36424315 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4 (Bit Score: 33; Significance: 0.000000003; HSPs: 1)
Name: chr4
Description:
Target: chr4; HSP #1
Raw Score: 33; E-Value: 0.000000003
Query Start/End: Original strand, 95 - 179
Target Start/End: Original strand, 4123154 - 4123238
Alignment:
| Q |
95 |
acacttatttaacattttattttctctttatttctcttcctaccacaccaactacacatcatatcaaacacatcacttttgttat |
179 |
Q |
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||||| |||||||| || ||||||||||||| |||||||||| |||| || | ||| |||| ||| | ||||||||| ||||||| |
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| T |
4123154 |
acactcatttaacacttcattttctctttatctctcttcctatcacatcaccaacatatcaaatctatcacatcactcttgttat |
4123238 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr2 (Bit Score: 29; Significance: 0.0000007; HSPs: 1)
Name: chr2
Description:
Target: chr2; HSP #1
Raw Score: 29; E-Value: 0.0000007
Query Start/End: Original strand, 85 - 117
Target Start/End: Complemental strand, 19208388 - 19208356
Alignment:
| Q |
85 |
taaatttcatacacttatttaacattttatttt |
117 |
Q |
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|||||||||||||||||||||||| |||||||| |
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| T |
19208388 |
taaatttcatacacttatttaacactttatttt |
19208356 |
T |
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