View Alignment

This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.

Legend
 Query
 Query hiting target  Query hiting target's complemental strand
 Query's complemental strand hiting target  Query's complemental strand hiting target's complemental strand

Alignment Overview

Query: NF4600-Insertion-9 (Length: 430)

Name: NF4600-Insertion-9
Description: NF4600
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)


[»] NF4600-Insertion-9
NF4600-Insertion-9
[»] chr8 (7 HSPs)
chr8 (8-250)||(13151179-13151420)
chr8 (283-430)||(13151457-13151605)
chr8 (370-430)||(7406471-7406531)
chr8 (284-335)||(34967902-34967954)
chr8 (358-430)||(35415095-35415167)
chr8 (285-345)||(7406384-7406445)
chr8 (166-246)||(35003967-35004047)
[»] chr1 (12 HSPs)
chr1 (8-249)||(27572321-27572574)
chr1 (284-430)||(27572136-27572285)
chr1 (8-53)||(27743755-27743800)
chr1 (284-345)||(20415922-20415984)
chr1 (147-246)||(20415776-20415875)
chr1 (162-246)||(32908171-32908256)
chr1 (147-244)||(18467352-18467449)
chr1 (287-334)||(32908078-32908126)
chr1 (283-334)||(31038097-31038148)
chr1 (283-339)||(18467487-18467544)
chr1 (305-337)||(7054942-7054974)
chr1 (367-415)||(18467574-18467622)
[»] chr2 (8 HSPs)
chr2 (147-248)||(22999423-22999524)
chr2 (287-430)||(22381823-22381967)
chr2 (287-430)||(22913849-22913993)
chr2 (147-248)||(22382007-22382108)
chr2 (147-248)||(22914033-22914134)
chr2 (283-336)||(24003064-24003118)
chr2 (301-338)||(22999558-22999595)
chr2 (361-430)||(22999618-22999687)
[»] chr5 (9 HSPs)
chr5 (358-430)||(5325394-5325466)
chr5 (358-430)||(7661010-7661082)
chr5 (166-250)||(42478195-42478279)
chr5 (379-430)||(42478356-42478407)
chr5 (380-430)||(15029992-15030042)
chr5 (285-345)||(31251451-31251512)
chr5 (286-345)||(15029897-15029956)
chr5 (183-250)||(20127818-20127885)
chr5 (382-430)||(31253809-31253857)
[»] chr4 (5 HSPs)
chr4 (358-430)||(27007186-27007258)
chr4 (358-430)||(20809054-20809126)
chr4 (358-430)||(41908146-41908218)
chr4 (289-345)||(41908232-41908289)
chr4 (383-428)||(52245326-52245371)
[»] chr6 (6 HSPs)
chr6 (283-430)||(11715368-11715516)
chr6 (284-430)||(12522421-12522569)
chr6 (161-246)||(34188371-34188456)
chr6 (171-250)||(15641293-15641372)
chr6 (359-430)||(15641485-15641556)
chr6 (161-246)||(12522644-12522729)
[»] chr3 (9 HSPs)
chr3 (283-345)||(3330528-3330591)
chr3 (170-246)||(15820163-15820239)
chr3 (283-430)||(6748401-6748549)
chr3 (284-406)||(6472936-6473059)
chr3 (384-430)||(4611681-4611727)
chr3 (380-430)||(6473550-6473600)
chr3 (380-430)||(6512770-6512820)
chr3 (381-430)||(3330628-3330677)
chr3 (170-246)||(6748907-6748983)
[»] scaffold0044 (1 HSPs)
scaffold0044 (284-345)||(22165-22227)
[»] chr7 (8 HSPs)
chr7 (284-345)||(46857777-46857839)
chr7 (283-345)||(24688385-24688448)
chr7 (307-345)||(23846216-23846254)
chr7 (380-430)||(24688299-24688349)
chr7 (380-430)||(39605852-39605902)
chr7 (381-430)||(23846291-23846340)
chr7 (381-430)||(46857691-46857740)
chr7 (166-242)||(31135764-31135840)
[»] scaffold0006 (1 HSPs)
scaffold0006 (307-339)||(93021-93053)


Alignment Details
Target: chr8 (Bit Score: 160; Significance: 4e-85; HSPs: 7)
Name: chr8
Description:

Target: chr8; HSP #1
Raw Score: 160; E-Value: 4e-85
Query Start/End: Original strand, 8 - 250
Target Start/End: Original strand, 13151179 - 13151420
Alignment:
Q  8 ttgtagattatagaacttcatgaataaaattatactccttatgttcctttctaattgtctcgtttgagatgnnnnnnnnnnnnnnatttggcattcttta 107  Q
    |||||||||||||||||||||||||||||||||||||||||||||| ||||||||||||||||||||||||              |||||||||| ||||    
T  13151179 ttgtagattatagaacttcatgaataaaattatactccttatgttcatttctaattgtctcgtttgagatgtttttaatttttttatttggcatt-ttta 13151277  T
Q  108 agttcaaaatagtgttaactattattttgtaannnnnnnataaatcaggagcacaatgacataaaaaaggaatataatacattccaacttagttgaaatt 207  Q
    ||||||||||||||||||||||||||||||||       ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||     
T  13151278 agttcaaaatagtgttaactattattttgtaatttttttataaatcaggagcacaatgacataaaaaaggaatataatacattccaacttagttgaaatg 13151377  T
Q  208 tcttgcagatttcggtctttgtcaggtgctcatatatattatt 250  Q
    ||||||||||||| |||||||||||||||||||||||||||||    
T  13151378 tcttgcagatttcagtctttgtcaggtgctcatatatattatt 13151420  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #2
Raw Score: 101; E-Value: 6e-50
Query Start/End: Original strand, 283 - 430
Target Start/End: Original strand, 13151457 - 13151605
Alignment:
Q  283 tgggggacataaacataacc-agtaaatccacacaaagtgtatgtcaacccaatcaggggatacnnnnnnnnnnnncaacactaatggatgtataaagtg 381  Q
    |||||||||||||||||||| || ||||||||||||||||||||||||||||||||||||||||            ||||||||||||||||||||||||    
T  13151457 tgggggacataaacataacccagaaaatccacacaaagtgtatgtcaacccaatcaggggatacaaaaaataaaaacaacactaatggatgtataaagtg 13151556  T
Q  382 cggtgtatggaccaaccgtcaacacagaacgaatccaataaccaacaac 430  Q
    |||||||||||||||||||||||||||||||||||||||||||||||||    
T  13151557 cggtgtatggaccaaccgtcaacacagaacgaatccaataaccaacaac 13151605  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #3
Raw Score: 37; E-Value: 0.00000000001
Query Start/End: Original strand, 370 - 430
Target Start/End: Original strand, 7406471 - 7406531
Alignment:
Q  370 atgtataaagtgcggtgtatggaccaaccgtcaacacagaacgaatccaataaccaacaac 430  Q
    |||| |||| || ||||||||||||||||||||||||| ||||||| ||| ||||||||||    
T  7406471 atgtctaaaatgtggtgtatggaccaaccgtcaacacaaaacgaattcaagaaccaacaac 7406531  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #4
Raw Score: 33; E-Value: 0.000000002
Query Start/End: Original strand, 284 - 335
Target Start/End: Complemental strand, 34967954 - 34967902
Alignment:
Q  284 gggggacataaacataacc-agtaaatccacacaaagtgtatgtcaacccaat 335  Q
    |||||||||| || ||||| ||| |||||||||||||||||||||||||||||    
T  34967954 gggggacatacacctaacctagtcaatccacacaaagtgtatgtcaacccaat 34967902  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #5
Raw Score: 33; E-Value: 0.000000002
Query Start/End: Original strand, 358 - 430
Target Start/End: Original strand, 35415095 - 35415167
Alignment:
Q  358 caacactaatggatgtataaagtgcggtgtatggaccaaccgtcaacacagaacgaatccaataaccaacaac 430  Q
    |||||| | ||||||| |||||||| | ||||||||||||||||||||   ||||||||||| || |||||||    
T  35415095 caacaccagtggatgtctaaagtgcagcgtatggaccaaccgtcaacatgaaacgaatccaagaatcaacaac 35415167  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #6
Raw Score: 30; E-Value: 0.0000002
Query Start/End: Original strand, 285 - 345
Target Start/End: Original strand, 7406384 - 7406445
Alignment:
Q  285 ggggacataaacataacc-agtaaatccacacaaagtgtatgtcaacccaatcaggggatac 345  Q
    ||||||||| || ||||| ||||||| || ||||||||||||||||| |||||||| |||||    
T  7406384 ggggacatagacctaacccagtaaattcatacaaagtgtatgtcaactcaatcaggtgatac 7406445  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #7
Raw Score: 29; E-Value: 0.0000006
Query Start/End: Original strand, 166 - 246
Target Start/End: Complemental strand, 35004047 - 35003967
Alignment:
Q  166 acataaaaaaggaatataatacattccaacttagttgaaatttcttgcagatttcggtctttgtcaggtgctcatatatat 246  Q
    |||||||||||||||| || ||| ||||||  ||||  ||| ||||||||||| | |||| ||||| |||||| |||||||    
T  35004047 acataaaaaaggaatagaagacaatccaacaaagttagaatgtcttgcagattccagtctatgtcatgtgctcctatatat 35003967  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1 (Bit Score: 80; Significance: 2e-37; HSPs: 12)
Name: chr1
Description:

Target: chr1; HSP #1
Raw Score: 80; E-Value: 2e-37
Query Start/End: Original strand, 8 - 249
Target Start/End: Complemental strand, 27572574 - 27572321
Alignment:
Q  8 ttgtagattatagaacttcatgaataaaattatactccttatgttcctttctaattgtctcgtttgagatg--nnnnnnnnnnnnnnatttggcattctt 105  Q
    ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |||||                ||||| |||||||    
T  27572574 ttgtagattatagaacttcatgaataaaattatactccttatgttcctttctaattgtctcgttttagatgtttttattttatttttatttgccattctt 27572475  T
Q  106 taagttcaaaatagtgttaactattattttgtaa---------nnnnnnnataaatcaggagcacaatgacataaaaaaggaatataatacattccaact 196  Q
    |||||||||||||||||||||||||||||||| |                ||||||||||||||||||||||||||||||||||| || |||||||| ||    
T  27572474 taagttcaaaatagtgttaactattattttgtgaaaattacttcttttttataaatcaggagcacaatgacataaaaaaggaataaaagacattccagct 27572375  T
Q  197 tagttgaaat-ttcttgcagatttcggtctttgtcaggtgctcatatatattat 249  Q
    || |||| || || ||| |||||  |||| ||| ||| ||||||||||||||||    
T  27572374 tacttgagatgtttttgtagattctggtccttgccagatgctcatatatattat 27572321  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #2
Raw Score: 63; E-Value: 3e-27
Query Start/End: Original strand, 284 - 430
Target Start/End: Complemental strand, 27572285 - 27572136
Alignment:
Q  284 gggggacataaacataacc-agtaaatccacacaaagtgtatgtcaacccaatcaggggatacnnnnnnnnnnnn--caacactaatggatgtataaagt 380  Q
    ||||||||| ||| ||||| ||||||||||||||||||||||||||||||||| ||| |||||              |||||||||||||||||||||||    
T  27572285 gggggacattaacctaacccagtaaatccacacaaagtgtatgtcaacccaatgaggtgatacaaaaaaaataaaaacaacactaatggatgtataaagt 27572186  T
Q  381 gcggtgtatggaccaaccgtcaacacagaacgaatccaataaccaacaac 430  Q
    ||| |||||||||||||||||||||  |||||||||||| ||||||||||    
T  27572185 gcgttgtatggaccaaccgtcaacaaggaacgaatccaagaaccaacaac 27572136  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #3
Raw Score: 46; E-Value: 4e-17
Query Start/End: Original strand, 8 - 53
Target Start/End: Original strand, 27743755 - 27743800
Alignment:
Q  8 ttgtagattatagaacttcatgaataaaattatactccttatgttc 53  Q
    ||||||||||||||||||||||||||||||||||||||||||||||    
T  27743755 ttgtagattatagaacttcatgaataaaattatactccttatgttc 27743800  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #4
Raw Score: 43; E-Value: 0.000000000000003
Query Start/End: Original strand, 284 - 345
Target Start/End: Original strand, 20415922 - 20415984
Alignment:
Q  284 gggggacataaacataacc-agtaaatccacacaaagtgtatgtcaacccaatcaggggatac 345  Q
    ||||||||||||| ||||| ||||||||||||||||||||| ||||||||||||||| |||||    
T  20415922 gggggacataaacttaacccagtaaatccacacaaagtgtacgtcaacccaatcaggtgatac 20415984  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #5
Raw Score: 40; E-Value: 0.0000000000002
Query Start/End: Original strand, 147 - 246
Target Start/End: Original strand, 20415776 - 20415875
Alignment:
Q  147 ataaatcaggagcacaatgacataaaaaaggaatataatacattccaacttagttgaaatttcttgcagatttcggtctttgtcaggtgctcatatatat 246  Q
    |||||||| ||| ||||| ||| |||| ||||||| || |||||| ||||||| |||||| ||||||||||| |  || |||||||||| ||||||||||    
T  20415776 ataaatcaagagtacaataacaaaaaagaggaatacaagacattctaacttagctgaaatgtcttgcagattccattccttgtcaggtgttcatatatat 20415875  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #6
Raw Score: 38; E-Value: 0.000000000003
Query Start/End: Original strand, 162 - 246
Target Start/End: Complemental strand, 32908256 - 32908171
Alignment:
Q  162 aatgacataaaaaa-ggaatataatacattccaacttagttgaaatttcttgcagatttcggtctttgtcaggtgctcatatatat 246  Q
    |||||||||||||| |||||| || ||| ||||||  ||||| |||  |||||||||| |||||| ||||||||||||||||||||    
T  32908256 aatgacataaaaaaaggaatagaagacagtccaacggagttggaatgacttgcagattccggtctatgtcaggtgctcatatatat 32908171  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #7
Raw Score: 34; E-Value: 0.0000000006
Query Start/End: Original strand, 147 - 244
Target Start/End: Original strand, 18467352 - 18467449
Alignment:
Q  147 ataaatcaggagcacaatgacataaaaaaggaatataatacattccaacttagttgaaatttcttgcagatttcggtctttgtcaggtgctcatatat 244  Q
    |||||||| ||||| |||| |||||||| | |||| || ||||||||||| |||||  || ||||||| |||||  || |||||| ||||||||||||    
T  18467352 ataaatcaagagcaaaatgtcataaaaaggaaatagaaaacattccaactaagttgggatgtcttgcaaatttcaatcattgtcaagtgctcatatat 18467449  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #8
Raw Score: 33; E-Value: 0.000000002
Query Start/End: Original strand, 287 - 334
Target Start/End: Complemental strand, 32908126 - 32908078
Alignment:
Q  287 ggacataaacataacc-agtaaatccacacaaagtgtatgtcaacccaa 334  Q
    |||||||||| ||||| ||| ||||||||||||||||||||||||||||    
T  32908126 ggacataaacctaacccagtcaatccacacaaagtgtatgtcaacccaa 32908078  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #9
Raw Score: 32; E-Value: 0.00000001
Query Start/End: Original strand, 283 - 334
Target Start/End: Original strand, 31038097 - 31038148
Alignment:
Q  283 tgggggacataaacataaccagtaaatccacacaaagtgtatgtcaacccaa 334  Q
    ||||| |||||||| |||||||| |||| |||||||||||||| ||||||||    
T  31038097 tggggaacataaacctaaccagtcaatcgacacaaagtgtatgccaacccaa 31038148  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #10
Raw Score: 30; E-Value: 0.0000002
Query Start/End: Original strand, 283 - 339
Target Start/End: Original strand, 18467487 - 18467544
Alignment:
Q  283 tgggggacataaacataac-cagtaaatccacacaaagtgtatgtcaacccaatcagg 339  Q
    |||||||||||||| |||| ||||||||||| |||||||| || |||||| |||||||    
T  18467487 tgggggacataaacctaactcagtaaatccatacaaagtgaatttcaacctaatcagg 18467544  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #11
Raw Score: 29; E-Value: 0.0000006
Query Start/End: Original strand, 305 - 337
Target Start/End: Original strand, 7054942 - 7054974
Alignment:
Q  305 taaatccacacaaagtgtatgtcaacccaatca 337  Q
    ||||| |||||||||||||||||||||||||||    
T  7054942 taaattcacacaaagtgtatgtcaacccaatca 7054974  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #12
Raw Score: 29; E-Value: 0.0000006
Query Start/End: Original strand, 367 - 415
Target Start/End: Original strand, 18467574 - 18467622
Alignment:
Q  367 tggatgtataaagtgcggtgtatggaccaaccgtcaacacagaacgaat 415  Q
    ||||||| |||||||  ||||||||||||||||| |||||| |||||||    
T  18467574 tggatgtctaaagtgtagtgtatggaccaaccgtaaacacaaaacgaat 18467622  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2 (Bit Score: 50; Significance: 2e-19; HSPs: 8)
Name: chr2
Description:

Target: chr2; HSP #1
Raw Score: 50; E-Value: 2e-19
Query Start/End: Original strand, 147 - 248
Target Start/End: Original strand, 22999423 - 22999524
Alignment:
Q  147 ataaatcaggagcacaatgacataaaaaaggaatataatacattccaacttagttgaaatttcttgcagatttcggtctttgtcaggtgctcatatatat 246  Q
    |||| ||| |||||||||||||||||||| |||||||| ||||| ||||| |||||  || ||||||||||| | ||| ||||||| |||||||||||||    
T  22999423 ataagtcaagagcacaatgacataaaaaaagaatataagacatttcaactaagttgggatgtcttgcagattccagtccttgtcagatgctcatatatat 22999522  T
Q  247 ta 248  Q
    ||    
T  22999523 ta 22999524  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #2
Raw Score: 45; E-Value: 2e-16
Query Start/End: Original strand, 287 - 430
Target Start/End: Complemental strand, 22381967 - 22381823
Alignment:
Q  287 ggacataaacataa-ccagtaaatccacacaaagtgtatgtcaacccaatcaggggatacnnnnnnnnnnnncaacactaatggatgtataaagtgcggt 385  Q
    |||||||||| ||| ||||| |||||||||||||||||||||||||||||||||  ||||            || ||||| ||||||| ||||||| | |    
T  22381967 ggacataaacctaatccagtgaatccacacaaagtgtatgtcaacccaatcaggtaatacgaaaaaataaaacagcactagtggatgtctaaagtgtgtt 22381868  T
Q  386 gtatggaccaaccgtcaacacagaacgaatccaataaccaacaac 430  Q
    ||||| ||||||||||||||   ||||||||||| ||||||||||    
T  22381867 gtatgaaccaaccgtcaacatgaaacgaatccaagaaccaacaac 22381823  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #3
Raw Score: 45; E-Value: 2e-16
Query Start/End: Original strand, 287 - 430
Target Start/End: Complemental strand, 22913993 - 22913849
Alignment:
Q  287 ggacataaacataa-ccagtaaatccacacaaagtgtatgtcaacccaatcaggggatacnnnnnnnnnnnncaacactaatggatgtataaagtgcggt 385  Q
    |||||||||| ||| ||||| |||||||||||||||||||||||||||||||||  ||||            || ||||| ||||||| ||||||| | |    
T  22913993 ggacataaacctaatccagtgaatccacacaaagtgtatgtcaacccaatcaggtaatacgaaaaaataaaacagcactagtggatgtctaaagtgtgtt 22913894  T
Q  386 gtatggaccaaccgtcaacacagaacgaatccaataaccaacaac 430  Q
    ||||| ||||||||||||||   ||||||||||| ||||||||||    
T  22913893 gtatgaaccaaccgtcaacatgaaacgaatccaagaaccaacaac 22913849  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #4
Raw Score: 38; E-Value: 0.000000000003
Query Start/End: Original strand, 147 - 248
Target Start/End: Complemental strand, 22382108 - 22382007
Alignment:
Q  147 ataaatcaggagcacaatgacataaaaaaggaatataatacattccaacttagttgaaatttcttgcagatttcggtctttgtcaggtgctcatatatat 246  Q
    |||| ||| |||||||||| ||||||||| |||||||| ||| | ||||| |||||  || | ||||||||| | ||| ||||||| |||||||||||||    
T  22382108 ataagtcaagagcacaatggcataaaaaaagaatataagacaattcaactaagttgggatgtgttgcagattccagtccttgtcagatgctcatatatat 22382009  T
Q  247 ta 248  Q
    ||    
T  22382008 ta 22382007  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #5
Raw Score: 38; E-Value: 0.000000000003
Query Start/End: Original strand, 147 - 248
Target Start/End: Complemental strand, 22914134 - 22914033
Alignment:
Q  147 ataaatcaggagcacaatgacataaaaaaggaatataatacattccaacttagttgaaatttcttgcagatttcggtctttgtcaggtgctcatatatat 246  Q
    |||| ||| |||||||||| ||||||||| |||||||| ||| | ||||| |||||  || | ||||||||| | ||| ||||||| |||||||||||||    
T  22914134 ataagtcaagagcacaatggcataaaaaaagaatataagacaattcaactaagttgggatgtgttgcagattccagtccttgtcagatgctcatatatat 22914035  T
Q  247 ta 248  Q
    ||    
T  22914034 ta 22914033  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #6
Raw Score: 35; E-Value: 0.0000000002
Query Start/End: Original strand, 283 - 336
Target Start/End: Original strand, 24003064 - 24003118
Alignment:
Q  283 tgggggacataaacataacc-agtaaatccacacaaagtgtatgtcaacccaatc 336  Q
    |||||||||||||| ||||| ||| ||||||||||||||||||| ||||||||||    
T  24003064 tgggggacataaacctaacccagtcaatccacacaaagtgtatgccaacccaatc 24003118  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #7
Raw Score: 34; E-Value: 0.0000000006
Query Start/End: Original strand, 301 - 338
Target Start/End: Original strand, 22999558 - 22999595
Alignment:
Q  301 ccagtaaatccacacaaagtgtatgtcaacccaatcag 338  Q
    ||||| ||||||||||||||||||||||||||||||||    
T  22999558 ccagtgaatccacacaaagtgtatgtcaacccaatcag 22999595  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #8
Raw Score: 34; E-Value: 0.0000000006
Query Start/End: Original strand, 361 - 430
Target Start/End: Original strand, 22999618 - 22999687
Alignment:
Q  361 cactaatggatgtataaagtgcggtgtatggaccaaccgtcaacacagaacgaatccaataaccaacaac 430  Q
    ||||| ||||||  ||||||| |||||||| ||||||||||||||  ||||||||| || ||||||||||    
T  22999618 cactagtggatgcctaaagtgtggtgtatgaaccaaccgtcaacatggaacgaatctaagaaccaacaac 22999687  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5 (Bit Score: 49; Significance: 7e-19; HSPs: 9)
Name: chr5
Description:

Target: chr5; HSP #1
Raw Score: 49; E-Value: 7e-19
Query Start/End: Original strand, 358 - 430
Target Start/End: Complemental strand, 5325466 - 5325394
Alignment:
Q  358 caacactaatggatgtataaagtgcggtgtatggaccaaccgtcaacacagaacgaatccaataaccaacaac 430  Q
    |||||||||||||||| |||||| |||||||||||||||| ||||||||| ||||||| ||| ||||||||||    
T  5325466 caacactaatggatgtctaaagtacggtgtatggaccaacagtcaacacaaaacgaattcaagaaccaacaac 5325394  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #2
Raw Score: 45; E-Value: 2e-16
Query Start/End: Original strand, 358 - 430
Target Start/End: Complemental strand, 7661082 - 7661010
Alignment:
Q  358 caacactaatggatgtataaagtgcggtgtatggaccaaccgtcaacacagaacgaatccaataaccaacaac 430  Q
    |||||||  ||||||| |||||||||| ||||||||||||| ||||||| |||||||||||| ||||||||||    
T  7661082 caacactggtggatgtctaaagtgcggcgtatggaccaaccatcaacacggaacgaatccaagaaccaacaac 7661010  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #3
Raw Score: 37; E-Value: 0.00000000001
Query Start/End: Original strand, 166 - 250
Target Start/End: Original strand, 42478195 - 42478279
Alignment:
Q  166 acataaaaaaggaatataatacattccaacttagttgaaatttcttgcagatttcggtctttgtcaggtgctcatatatattatt 250  Q
    |||||||||||||||| || ||  |||||| || ||||||| ||||| ||||||  |||| | ||||||||||||||||||||||    
T  42478195 acataaaaaaggaatagaagaccgtccaacataattgaaatgtcttgtagattttagtctatatcaggtgctcatatatattatt 42478279  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #4
Raw Score: 36; E-Value: 0.00000000004
Query Start/End: Original strand, 379 - 430
Target Start/End: Original strand, 42478356 - 42478407
Alignment:
Q  379 gtgcggtgtatggaccaaccgtcaacacagaacgaatccaataaccaacaac 430  Q
    ||||||||||||||||||||||||||||| || | |||||| ||||||||||    
T  42478356 gtgcggtgtatggaccaaccgtcaacacaaaatggatccaagaaccaacaac 42478407  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #5
Raw Score: 35; E-Value: 0.0000000002
Query Start/End: Original strand, 380 - 430
Target Start/End: Original strand, 15029992 - 15030042
Alignment:
Q  380 tgcggtgtatggaccaaccgtcaacacagaacgaatccaataaccaacaac 430  Q
    |||||||||||||||||||||||||||| || | |||||| ||||||||||    
T  15029992 tgcggtgtatggaccaaccgtcaacacaaaatggatccaagaaccaacaac 15030042  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #6
Raw Score: 34; E-Value: 0.0000000006
Query Start/End: Original strand, 285 - 345
Target Start/End: Original strand, 31251451 - 31251512
Alignment:
Q  285 ggggacataaacataac-cagtaaatccacacaaagtgtatgtcaacccaatcaggggatac 345  Q
    |||| ||||||| |||| |||| |||||||||||||||||||||||||||| |||| |||||    
T  31251451 gggggcataaacctaacacagtcaatccacacaaagtgtatgtcaacccaaacaggtgatac 31251512  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #7
Raw Score: 33; E-Value: 0.000000002
Query Start/End: Original strand, 286 - 345
Target Start/End: Original strand, 15029897 - 15029956
Alignment:
Q  286 gggacataaacataac-cagtaaatccacacaaagtgtatgtcaacccaatcaggggatac 345  Q
    |||||||||||||||| |||| ||||||||||||||||||| |||||||||| || |||||    
T  15029897 gggacataaacataactcagtcaatccacacaaagtgtatg-caacccaatcgggtgatac 15029956  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #8
Raw Score: 32; E-Value: 0.00000001
Query Start/End: Original strand, 183 - 250
Target Start/End: Original strand, 20127818 - 20127885
Alignment:
Q  183 aatacattccaacttagttgaaatttcttgcagatttcggtctttgtcaggtgctcatatatattatt 250  Q
    |||||| |||||| |||||| ||| ||||| ||||| | |||| ||||||||||||||| ||||||||    
T  20127818 aatacagtccaacatagttggaatgtcttgtagattccagtctatgtcaggtgctcataaatattatt 20127885  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #9
Raw Score: 29; E-Value: 0.0000006
Query Start/End: Original strand, 382 - 430
Target Start/End: Original strand, 31253809 - 31253857
Alignment:
Q  382 cggtgtatggaccaaccgtcaacacagaacgaatccaataaccaacaac 430  Q
    |||||||| ||| |||||||||||| ||| |||||||| ||||||||||    
T  31253809 cggtgtattgacaaaccgtcaacacggaatgaatccaagaaccaacaac 31253857  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4 (Bit Score: 49; Significance: 7e-19; HSPs: 5)
Name: chr4
Description:

Target: chr4; HSP #1
Raw Score: 49; E-Value: 7e-19
Query Start/End: Original strand, 358 - 430
Target Start/End: Original strand, 27007186 - 27007258
Alignment:
Q  358 caacactaatggatgtataaagtgcggtgtatggaccaaccgtcaacacagaacgaatccaataaccaacaac 430  Q
    |||||||| || |||| |||||||||||||||||||||||||||||||| | |||||||||| ||||||||||    
T  27007186 caacactagtgaatgtctaaagtgcggtgtatggaccaaccgtcaacacgggacgaatccaagaaccaacaac 27007258  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #2
Raw Score: 45; E-Value: 2e-16
Query Start/End: Original strand, 358 - 430
Target Start/End: Complemental strand, 20809126 - 20809054
Alignment:
Q  358 caacactaatggatgtataaagtgcggtgtatggaccaaccgtcaacacagaacgaatccaataaccaacaac 430  Q
    |||||| | ||||||| |||| ||||||||||||||||||| |||||||||||||| ||||| ||||||||||    
T  20809126 caacaccagtggatgtctaaaatgcggtgtatggaccaaccatcaacacagaacgagtccaaaaaccaacaac 20809054  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #3
Raw Score: 45; E-Value: 2e-16
Query Start/End: Original strand, 358 - 430
Target Start/End: Complemental strand, 41908218 - 41908146
Alignment:
Q  358 caacactaatggatgtataaagtgcggtgtatggaccaaccgtcaacacagaacgaatccaataaccaacaac 430  Q
    |||||||| ||||||| |||||||||  |||||||||||||||||||||| ||||||| ||| ||||||||||    
T  41908218 caacactagtggatgtctaaagtgcgacgtatggaccaaccgtcaacacaaaacgaattcaagaaccaacaac 41908146  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #4
Raw Score: 30; E-Value: 0.0000002
Query Start/End: Original strand, 289 - 345
Target Start/End: Complemental strand, 41908289 - 41908232
Alignment:
Q  289 acataaacataacc-agtaaatccacacaaagtgtatgtcaacccaatcaggggatac 345  Q
    |||||||| ||||| ||||||||||||||||||||| ||  ||||||||||| |||||    
T  41908289 acataaacctaacccagtaaatccacacaaagtgtaggtttacccaatcaggtgatac 41908232  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #5
Raw Score: 30; E-Value: 0.0000002
Query Start/End: Original strand, 383 - 428
Target Start/End: Complemental strand, 52245371 - 52245326
Alignment:
Q  383 ggtgtatggaccaaccgtcaacacagaacgaatccaataaccaaca 428  Q
    ||||||||||| ||||||||||| |||| |||||||| ||||||||    
T  52245371 ggtgtatggacaaaccgtcaacatagaatgaatccaaaaaccaaca 52245326  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6 (Bit Score: 45; Significance: 2e-16; HSPs: 6)
Name: chr6
Description:

Target: chr6; HSP #1
Raw Score: 45; E-Value: 2e-16
Query Start/End: Original strand, 283 - 430
Target Start/End: Original strand, 11715368 - 11715516
Alignment:
Q  283 tgggggacataaacataacc-agtaaatccacacaaagtgtatgtcaacccaatcaggggatacnnnnnnnnnnnncaacactaatggatgtataaagtg 381  Q
    |||||||||||||| ||||| ||||||||||| ||||||||| ||| ||||||||||| | |||            ||||||||  ||| || |||||||    
T  11715368 tgggggacataaacctaacctagtaaatccacgcaaagtgtaagtctacccaatcaggtggtacaaaaaatgaaaacaacactaggggaagtctaaagtg 11715467  T
Q  382 cggtgtatggaccaaccgtcaacacagaacgaatccaataaccaacaac 430  Q
    ||| ||||||| |||||||||||||||| | ||||||| ||||||||||    
T  11715468 cggcgtatggatcaaccgtcaacacagatcaaatccaagaaccaacaac 11715516  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #2
Raw Score: 37; E-Value: 0.00000000001
Query Start/End: Original strand, 284 - 430
Target Start/End: Complemental strand, 12522569 - 12522421
Alignment:
Q  284 gggggacataaacataacc-agtaaatccacacaaagtgtatgtcaacccaatcaggggatac-nnnnnnnnnnnncaacactaatggatgtataaagtg 381  Q
    ||||||||||||| ||||| ||| ||||||||||||||||||| |||||||||| || |||||             |||||||| || |||| |||  ||    
T  12522569 gggggacataaacctaacccagtcaatccacacaaagtgtatgccaacccaatcgggtgatacaaagaaataaaaacaacactagtgaatgtctaacttg 12522470  T
Q  382 cggtgtatggaccaaccgtcaacacagaacgaatccaataaccaacaac 430  Q
    |||||||||||||||||||||||||  || | |||||| ||||||||||    
T  12522469 cggtgtatggaccaaccgtcaacacgaaatggatccaagaaccaacaac 12522421  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #3
Raw Score: 34; E-Value: 0.0000000006
Query Start/End: Original strand, 161 - 246
Target Start/End: Original strand, 34188371 - 34188456
Alignment:
Q  161 caatgacataaaaaaggaatataatacattccaacttagttgaaatttcttgcagatttcggtctttgtcaggtgctcatatatat 246  Q
    ||||||||||||||||||||| || ||| ||||||  ||||  ||| ||||||||||| |  ||| |||||| |||||||||||||    
T  34188371 caatgacataaaaaaggaatagaagacagtccaacaaagtttgaatgtcttgcagattccaatctatgtcagatgctcatatatat 34188456  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #4
Raw Score: 32; E-Value: 0.00000001
Query Start/End: Original strand, 171 - 250
Target Start/End: Original strand, 15641293 - 15641372
Alignment:
Q  171 aaaaaggaatataatacattccaacttagttgaaatttcttgcagatttcggtctttgtcaggtgctcatatatattatt 250  Q
    ||||||||||| || ||||||||||| |||||  || ||| ||| ||| |  || |||||||||||||||||||||||||    
T  15641293 aaaaaggaatagaagacattccaactaagttgggatatctagcatattccaatcattgtcaggtgctcatatatattatt 15641372  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #5
Raw Score: 32; E-Value: 0.00000001
Query Start/End: Original strand, 359 - 430
Target Start/End: Original strand, 15641485 - 15641556
Alignment:
Q  359 aacactaatggatgtataaagtgcggtgtatggaccaaccgtcaacacagaacgaatccaataaccaacaac 430  Q
    ||||||| ||||||| |||||||||||||||||| |||  || | |||| |||| |||||| ||||||||||    
T  15641485 aacactagtggatgtttaaagtgcggtgtatggatcaagtgttagcacaaaacggatccaagaaccaacaac 15641556  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #6
Raw Score: 30; E-Value: 0.0000002
Query Start/End: Original strand, 161 - 246
Target Start/End: Complemental strand, 12522729 - 12522644
Alignment:
Q  161 caatgacataaaaaaggaatataatacattccaacttagttgaaatttcttgcagatttcggtctttgtcaggtgctcatatatat 246  Q
    ||||||||||||||| ||||| || ||| ||||||  ||||| |||  |||||| ||| | |||| ||||||||||| ||||||||    
T  12522729 caatgacataaaaaaagaatagaagacagtccaacagagttggaatgacttgcaaattccagtctatgtcaggtgcttatatatat 12522644  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3 (Bit Score: 40; Significance: 0.0000000000002; HSPs: 9)
Name: chr3
Description:

Target: chr3; HSP #1
Raw Score: 40; E-Value: 0.0000000000002
Query Start/End: Original strand, 283 - 345
Target Start/End: Original strand, 3330528 - 3330591
Alignment:
Q  283 tgggggacataaacataacc-agtaaatccacacaaagtgtatgtcaacccaatcaggggatac 345  Q
    |||||||||||||| ||||| ||| |||||||||||||||||||||||||||| |||| |||||    
T  3330528 tgggggacataaacctaacccagtcaatccacacaaagtgtatgtcaacccaaacaggtgatac 3330591  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #2
Raw Score: 37; E-Value: 0.00000000001
Query Start/End: Original strand, 170 - 246
Target Start/End: Complemental strand, 15820239 - 15820163
Alignment:
Q  170 aaaaaaggaatataatacattccaacttagttgaaatttcttgcagatttcggtctttgtcaggtgctcatatatat 246  Q
    |||||||||||| || ||| |||||| |||||| ||| ||||||||||| | ||||  |||||||||||||||||||    
T  15820239 aaaaaaggaatagaagacagtccaacatagttggaatgtcttgcagattccagtctaggtcaggtgctcatatatat 15820163  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #3
Raw Score: 33; E-Value: 0.000000002
Query Start/End: Original strand, 283 - 430
Target Start/End: Complemental strand, 6748549 - 6748401
Alignment:
Q  283 tgggggacataaacataacc-agtaaatccacacaaagtgtatgtcaacccaatcaggggatacnnnnnnnnnnnncaacactaatggatgtataaagtg 381  Q
    |||||||||||||| ||||| ||| ||| ||| |||||||||||||||||||||| || |||||            ||||||   || |||| |||  ||    
T  6748549 tgggggacataaacctaacccagtcaattcactcaaagtgtatgtcaacccaatcgggtgatacaaagaaataaaacaacaccggtgaatgtttaacttg 6748450  T
Q  382 cggtgtatggaccaaccgtcaacacagaacgaatccaataaccaacaac 430  Q
    |||||||||||||||||||||||||  || | |||||| ||||||||||    
T  6748449 cggtgtatggaccaaccgtcaacacgaaatggatccaagaaccaacaac 6748401  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #4
Raw Score: 32; E-Value: 0.00000001
Query Start/End: Original strand, 284 - 406
Target Start/End: Original strand, 6472936 - 6473059
Alignment:
Q  284 gggggacataaacataacc-agtaaatccacacaaagtgtatgtcaacccaatcaggggatacnnnnnnnnnnnncaacactaatggatgtataaagtgc 382  Q
    ||||||||||||| ||||| ||| ||| ||| |||||||||||||||||||||| || |||||            ||||||  ||| |||| |||  |||    
T  6472936 gggggacataaacctaacccagtcaattcactcaaagtgtatgtcaacccaatcgggtgatacaaagaaataaaacaacaccgatgaatgtctaacttgc 6473035  T
Q  383 ggtgtatggaccaaccgtcaacac 406  Q
    ||||||||||||||||||||||||    
T  6473036 ggtgtatggaccaaccgtcaacac 6473059  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #5
Raw Score: 31; E-Value: 0.00000004
Query Start/End: Original strand, 384 - 430
Target Start/End: Original strand, 4611681 - 4611727
Alignment:
Q  384 gtgtatggaccaaccgtcaacacagaacgaatccaataaccaacaac 430  Q
    ||||||||| || |||||||||| |||||||||||| ||||||||||    
T  4611681 gtgtatggatcatccgtcaacacggaacgaatccaagaaccaacaac 4611727  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #6
Raw Score: 31; E-Value: 0.00000004
Query Start/End: Original strand, 380 - 430
Target Start/End: Original strand, 6473550 - 6473600
Alignment:
Q  380 tgcggtgtatggaccaaccgtcaacacagaacgaatccaataaccaacaac 430  Q
    |||||||||||||||||||||||||||  || | |||||| ||||||||||    
T  6473550 tgcggtgtatggaccaaccgtcaacacgaaatggatccaagaaccaacaac 6473600  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #7
Raw Score: 31; E-Value: 0.00000004
Query Start/End: Original strand, 380 - 430
Target Start/End: Original strand, 6512770 - 6512820
Alignment:
Q  380 tgcggtgtatggaccaaccgtcaacacagaacgaatccaataaccaacaac 430  Q
    |||||||||||||||||||||||||||  || | |||||| ||||||||||    
T  6512770 tgcggtgtatggaccaaccgtcaacacgaaatggatccaagaaccaacaac 6512820  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #8
Raw Score: 30; E-Value: 0.0000002
Query Start/End: Original strand, 381 - 430
Target Start/End: Original strand, 3330628 - 3330677
Alignment:
Q  381 gcggtgtatggaccaaccgtcaacacagaacgaatccaataaccaacaac 430  Q
    ||||||||||||| ||||||| |||| ||| |||||||| ||||||||||    
T  3330628 gcggtgtatggacaaaccgtcgacacggaatgaatccaagaaccaacaac 3330677  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #9
Raw Score: 29; E-Value: 0.0000006
Query Start/End: Original strand, 170 - 246
Target Start/End: Complemental strand, 6748983 - 6748907
Alignment:
Q  170 aaaaaaggaatataatacattccaacttagttgaaatttcttgcagatttcggtctttgtcaggtgctcatatatat 246  Q
    |||||||||||| || ||| ||||||  ||||| |||  ||||||||||| ||||| |||||||| || ||||||||    
T  6748983 aaaaaaggaatagaagacagtccaacagagttggaatggcttgcagattttggtctatgtcaggtccttatatatat 6748907  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: scaffold0044 (Bit Score: 39; Significance: 0.0000000000006; HSPs: 1)
Name: scaffold0044
Description:

Target: scaffold0044; HSP #1
Raw Score: 39; E-Value: 0.0000000000006
Query Start/End: Original strand, 284 - 345
Target Start/End: Complemental strand, 22227 - 22165
Alignment:
Q  284 gggggacataaacataacc-agtaaatccacacaaagtgtatgtcaacccaatcaggggatac 345  Q
    ||||||||||||| ||||| ||| |||||||||||||||||||||||||||| |||| |||||    
T  22227 gggggacataaacttaacccagtcaatccacacaaagtgtatgtcaacccaaacaggtgatac 22165  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7 (Bit Score: 35; Significance: 0.0000000002; HSPs: 8)
Name: chr7
Description:

Target: chr7; HSP #1
Raw Score: 35; E-Value: 0.0000000002
Query Start/End: Original strand, 284 - 345
Target Start/End: Complemental strand, 46857839 - 46857777
Alignment:
Q  284 gggggacataaacataacc-agtaaatccacacaaagtgtatgtcaacccaatcaggggatac 345  Q
    ||||||||||||| ||||| ||| ||||||||||||||||||||||| |||| |||| |||||    
T  46857839 gggggacataaacctaacccagtcaatccacacaaagtgtatgtcaatccaaacaggtgatac 46857777  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #2
Raw Score: 32; E-Value: 0.00000001
Query Start/End: Original strand, 283 - 345
Target Start/End: Complemental strand, 24688448 - 24688385
Alignment:
Q  283 tgggggacataaacataac-cagtaaatccacacaaagtgtatgtcaacccaatcaggggatac 345  Q
    |||||| ||||||| |||| || | |||||||||||||||||||||||||||| |||| |||||    
T  24688448 tgggggtcataaacctaactcaatcaatccacacaaagtgtatgtcaacccaaacaggtgatac 24688385  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #3
Raw Score: 31; E-Value: 0.00000004
Query Start/End: Original strand, 307 - 345
Target Start/End: Original strand, 23846216 - 23846254
Alignment:
Q  307 aatccacacaaagtgtatgtcaacccaatcaggggatac 345  Q
    |||||||||||||||||||||||||||| |||| |||||    
T  23846216 aatccacacaaagtgtatgtcaacccaaacaggtgatac 23846254  T

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Target: chr7; HSP #4
Raw Score: 31; E-Value: 0.00000004
Query Start/End: Original strand, 380 - 430
Target Start/End: Complemental strand, 24688349 - 24688299
Alignment:
Q  380 tgcggtgtatggaccaaccgtcaacacagaacgaatccaataaccaacaac 430  Q
    |||||||||||||| |||||||||||| ||| | |||||| ||||||||||    
T  24688349 tgcggtgtatggacaaaccgtcaacacggaatggatccaagaaccaacaac 24688299  T

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Target: chr7; HSP #5
Raw Score: 31; E-Value: 0.00000004
Query Start/End: Original strand, 380 - 430
Target Start/End: Complemental strand, 39605902 - 39605852
Alignment:
Q  380 tgcggtgtatggaccaaccgtcaacacagaacgaatccaataaccaacaac 430  Q
    |||||||||||||| |||||||||||| ||| | |||||| ||||||||||    
T  39605902 tgcggtgtatggacaaaccgtcaacacggaatgtatccaagaaccaacaac 39605852  T

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Target: chr7; HSP #6
Raw Score: 30; E-Value: 0.0000002
Query Start/End: Original strand, 381 - 430
Target Start/End: Original strand, 23846291 - 23846340
Alignment:
Q  381 gcggtgtatggaccaaccgtcaacacagaacgaatccaataaccaacaac 430  Q
    ||||||||||||| ||||||||||||  || |||||||| ||||||||||    
T  23846291 gcggtgtatggacaaaccgtcaacacgaaatgaatccaagaaccaacaac 23846340  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #7
Raw Score: 30; E-Value: 0.0000002
Query Start/End: Original strand, 381 - 430
Target Start/End: Complemental strand, 46857740 - 46857691
Alignment:
Q  381 gcggtgtatggaccaaccgtcaacacagaacgaatccaataaccaacaac 430  Q
    |||||||||| || |||||||||||| ||| |||||||| ||||||||||    
T  46857740 gcggtgtatgaacaaaccgtcaacacggaatgaatccaagaaccaacaac 46857691  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #8
Raw Score: 29; E-Value: 0.0000006
Query Start/End: Original strand, 166 - 242
Target Start/End: Complemental strand, 31135840 - 31135764
Alignment:
Q  166 acataaaaaaggaatataatacattccaacttagttgaaatttcttgcagatttcggtctttgtcaggtgctcatat 242  Q
    |||||||||||||||| || ||| | ||||  ||||||||| ||||||| ||||| |||| ||||||| | ||||||    
T  31135840 acataaaaaaggaatagaagacagttcaacaaagttgaaatgtcttgcaaatttcagtctatgtcagggggtcatat 31135764  T

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Target: scaffold0006 (Bit Score: 29; Significance: 0.0000006; HSPs: 1)
Name: scaffold0006
Description:

Target: scaffold0006; HSP #1
Raw Score: 29; E-Value: 0.0000006
Query Start/End: Original strand, 307 - 339
Target Start/End: Original strand, 93021 - 93053
Alignment:
Q  307 aatccacacaaagtgtatgtcaacccaatcagg 339  Q
    |||||||| ||||||||||||||||||||||||    
T  93021 aatccacataaagtgtatgtcaacccaatcagg 93053  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]



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