View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF4600_high_10 (Length: 262)
Name: NF4600_high_10
Description: NF4600
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF4600_high_10 |
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Alignment Details
Target: chr1 (Bit Score: 205; Significance: 1e-112; HSPs: 5)
Name: chr1
Description:
Target: chr1; HSP #1
Raw Score: 205; E-Value: 1e-112
Query Start/End: Original strand, 19 - 253
Target Start/End: Original strand, 38117363 - 38117597
Alignment:
| Q |
19 |
atatggttaaaattgttggaggtatggtgatggtaatgacagataaatctgtagcattttagcttgagggatggcatttcatgaacacgagtacaggacc |
118 |
Q |
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| T |
38117363 |
atatggttaaaattgttggaggtatggtgatggtaatgacagataaatctgtagcattttagcttgagggatggcatttcatgaacacgagtacaggacc |
38117462 |
T |
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| Q |
119 |
gtgtttcttgaattctgtaagtgctgcatggtaaaaagatgcagtagtagtccaaccttttccccccaaaatgttannnnnnnnnnaacttgcctttgtt |
218 |
Q |
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| T |
38117463 |
gtgtttcttgaattctgtaagtgctgcatggtaaaaagatgcagtagtagtccaaccttttccccccaaaatgttattttttttttaacttgcctttgtt |
38117562 |
T |
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| Q |
219 |
tgaattcaacttgcttgactaatttgttgatgatg |
253 |
Q |
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| T |
38117563 |
tgaattcaacttgcttgactaatttgttgatgatg |
38117597 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr1; HSP #2
Raw Score: 45; E-Value: 1e-16
Query Start/End: Original strand, 31 - 167
Target Start/End: Original strand, 38161179 - 38161308
Alignment:
| Q |
31 |
ttgttggaggtatggtgatggtaatgacagataaatctgtagcattttagcttgagggatggcatttcatgaacacgagtacaggaccg-tgtttcttga |
129 |
Q |
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| T |
38161179 |
ttgttggaggtagtgtaatagtaatgacagataaatctgtagcattttagtttgagggctggcatttca-gaa-------acaagaccaatgtttcttga |
38161270 |
T |
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| Q |
130 |
attctgtaagtgctgcatggtaaaa-agatgcagtagta |
167 |
Q |
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| T |
38161271 |
attatgtaagtg-tgcatggtaaaagagatgcagtagta |
38161308 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr1; HSP #3
Raw Score: 34; E-Value: 0.0000000004
Query Start/End: Original strand, 122 - 171
Target Start/End: Original strand, 38139672 - 38139721
Alignment:
| Q |
122 |
tttcttgaattctgtaagtgctgcatggtaaaaagatgcagtagtagtcc |
171 |
Q |
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| T |
38139672 |
tttcttgaattttacaagtgctgcatggtaaaaagatgcagtaatagtcc |
38139721 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr1; HSP #4
Raw Score: 30; E-Value: 0.00000009
Query Start/End: Original strand, 205 - 253
Target Start/End: Original strand, 38139771 - 38139820
Alignment:
| Q |
205 |
aacttgcctttgtttgaattcaacttg-cttgactaatttgttgatgatg |
253 |
Q |
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| T |
38139771 |
aacttgcctttgtttgtatttaacttgccttgaccaatttgttgatgatg |
38139820 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr1; HSP #5
Raw Score: 29; E-Value: 0.0000004
Query Start/End: Original strand, 205 - 252
Target Start/End: Original strand, 38161326 - 38161374
Alignment:
| Q |
205 |
aacttgcctttgtttgaattcaacttg-cttgactaatttgttgatgat |
252 |
Q |
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| T |
38161326 |
aacttgcctttgtttgaatttaacttgccttgaccaatttgttgttgat |
38161374 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4 (Bit Score: 54; Significance: 4e-22; HSPs: 2)
Name: chr4
Description:
Target: chr4; HSP #1
Raw Score: 54; E-Value: 4e-22
Query Start/End: Original strand, 22 - 99
Target Start/End: Original strand, 49005168 - 49005245
Alignment:
| Q |
22 |
tggttaaaattgttggaggtatggtgatggtaatgacagataaatctgtagcattttagcttgagggatggcatttca |
99 |
Q |
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| T |
49005168 |
tggttaaaattgttggaggtatggtaatagtaatgacagataaatctatagcatcttagtttgaaggatggcatttca |
49005245 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4; HSP #2
Raw Score: 32; E-Value: 0.000000006
Query Start/End: Original strand, 155 - 194
Target Start/End: Original strand, 49005279 - 49005318
Alignment:
| Q |
155 |
agatgcagtagtagtccaaccttttccccccaaaatgtta |
194 |
Q |
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| T |
49005279 |
agatgcagtagtagtccaacctttttccccctaaatgtta |
49005318 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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