View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF4600_high_3 (Length: 353)
Name: NF4600_high_3
Description: NF4600
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF4600_high_3 |
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Alignment Details
Target: chr4 (Bit Score: 290; Significance: 1e-163; HSPs: 2)
Name: chr4
Description:
Target: chr4; HSP #1
Raw Score: 290; E-Value: 1e-163
Query Start/End: Original strand, 17 - 339
Target Start/End: Complemental strand, 55337167 - 55336845
Alignment:
| Q |
17 |
atgcacacctcaacttcttctttttctttcttgtcttcaaaaagaggaaatgtgaatgcctcaatccatttcccaagacccaattctttacttcctaaga |
116 |
Q |
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| T |
55337167 |
atgcacacctcaacttcttctttttctttcttgtcttcaaaaagaggtaatgtgaatgcctcaatccatttcccaagacccaattctttacttcctaaga |
55337068 |
T |
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| Q |
117 |
ataggatacccactgcaaagctggttgaagggttaaccttcaaagactcagttccttcattattgcttgnnnnnnntgtcatcaataggacacataattt |
216 |
Q |
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| T |
55337067 |
ataggatacccactgcaaagctggttgaagggttaaccttcaaagactcagttccttcattattgcttgaaaaaaatgtcatcaataggacacataattt |
55336968 |
T |
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| Q |
217 |
acaccatgatttatccaattctacaatcaataactccaacaccgtgcaactctatgctatcttagattctgtatctgacagaattgaaatgcacaaaaac |
316 |
Q |
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| T |
55336967 |
acaccatgatttatccaattcttcaatcaataactccaacaccgtgcaactctatgctatcttagattctgtatctgacagaattgaaatgcacaaaaac |
55336868 |
T |
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| Q |
317 |
atctgcgaacagcgtcaaaattg |
339 |
Q |
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| T |
55336867 |
atcggcgaacagcgtcaaaattg |
55336845 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4; HSP #2
Raw Score: 39; E-Value: 0.0000000000005
Query Start/End: Original strand, 261 - 339
Target Start/End: Complemental strand, 55331485 - 55331407
Alignment:
| Q |
261 |
tgcaactctatgctatcttagattctgtatctgacagaattgaaatgcacaaaaacatctgcgaacagcgtcaaaattg |
339 |
Q |
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| T |
55331485 |
tgcaactctatgcaattttagattctgtatccgacagaatcgaaatgcacaacaacctcagccaacagcgacagaattg |
55331407 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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