View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF4600_high_6 (Length: 310)
Name: NF4600_high_6
Description: NF4600
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF4600_high_6 |
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| [»] chr4 (1 HSPs) |
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Alignment Details
Target: chr4 (Bit Score: 255; Significance: 1e-142; HSPs: 1)
Name: chr4
Description:
Target: chr4; HSP #1
Raw Score: 255; E-Value: 1e-142
Query Start/End: Original strand, 13 - 310
Target Start/End: Complemental strand, 55337437 - 55337144
Alignment:
| Q |
13 |
tcatcagcttcattttttaatactaaaaacatgttattttattgtgtgtatacaaatattcctacatttggtccataggtatctaagaacctatttgttt |
112 |
Q |
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|||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
55337437 |
tcattagcttcattttttaatactaaaaacatgttattttattgtgtgtatacaaatattcctacatttggtccataggtatctaagaacctatttgttt |
55337338 |
T |
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| Q |
113 |
aatacctcccataactc-ttgtcttaaaaaattgaataaaactataacattacaagttgcactcatcctccctgtcacaatagtatagtatatatataaa |
211 |
Q |
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||||||||||||||||| |||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||| |||||||||||||||| |
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| T |
55337337 |
aatacctcccataactctttgtactaaaaaattgaataaaactataacattacaagttgcactcatcctccctgtcaca-----atagtatatatataaa |
55337243 |
T |
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| Q |
212 |
cctttcctcactaacactaaacacaaagcaaaacataattaacatacgtacaatcatttcattttcatggcttccatgcacacctcaacttcttctttt |
310 |
Q |
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||||||||||||||||||||||||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
55337242 |
cctttcctcactaacactaaacacaaatcaaaacataattaacatacgtacaatcatttcattttcatggcttccatgcacacctcaacttcttctttt |
55337144 |
T |
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