View Alignment

This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.

Legend
 Query
 Query hiting target  Query hiting target's complemental strand
 Query's complemental strand hiting target  Query's complemental strand hiting target's complemental strand

Alignment Overview

Query: NF4600_high_8 (Length: 284)

Name: NF4600_high_8
Description: NF4600
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)


[»] NF4600_high_8
NF4600_high_8
[»] chr2 (6 HSPs)
chr2 (19-269)||(40056278-40056527)
chr2 (54-143)||(38356837-38356926)
chr2 (59-143)||(35063612-35063696)
chr2 (42-170)||(1299954-1300080)
chr2 (59-143)||(29453643-29453727)
chr2 (81-163)||(45513049-45513131)
[»] chr4 (7 HSPs)
chr4 (110-248)||(39484928-39485067)
chr4 (59-170)||(32641905-32642015)
chr4 (54-199)||(12007454-12007599)
chr4 (93-148)||(50072020-50072075)
chr4 (54-140)||(12007919-12008005)
chr4 (54-155)||(32641168-32641269)
chr4 (54-122)||(2486972-2487040)
[»] scaffold0119 (1 HSPs)
scaffold0119 (42-193)||(36-185)
[»] chr6 (2 HSPs)
chr6 (42-193)||(26670609-26670758)
chr6 (82-143)||(12029351-12029412)
[»] chr8 (5 HSPs)
chr8 (54-157)||(41456052-41456155)
chr8 (79-148)||(13231843-13231912)
chr8 (79-159)||(2623232-2623312)
chr8 (59-143)||(7043101-7043185)
chr8 (93-143)||(35595-35645)
[»] chr1 (6 HSPs)
chr1 (59-140)||(28651687-28651768)
chr1 (54-171)||(27818728-27818844)
chr1 (59-143)||(25476083-25476167)
chr1 (94-168)||(48621163-48621237)
chr1 (59-170)||(44634034-44634145)
chr1 (93-170)||(48621841-48621918)
[»] chr5 (5 HSPs)
chr5 (62-143)||(24153970-24154051)
chr5 (52-148)||(17115698-17115794)
chr5 (59-170)||(31079720-31079831)
chr5 (54-170)||(24153192-24153308)
chr5 (79-135)||(29108111-29108166)
[»] chr3 (8 HSPs)
chr3 (54-143)||(45004705-45004794)
chr3 (78-170)||(45146663-45146755)
chr3 (59-139)||(51489853-51489933)
chr3 (93-148)||(50766027-50766082)
chr3 (59-148)||(50823970-50824059)
chr3 (59-148)||(50851801-50851890)
chr3 (82-138)||(35744535-35744591)
chr3 (67-159)||(45005505-45005597)
[»] chr7 (2 HSPs)
chr7 (59-140)||(24555973-24556054)
chr7 (82-143)||(35263740-35263801)


Alignment Details
Target: chr2 (Bit Score: 221; Significance: 1e-121; HSPs: 6)
Name: chr2
Description:

Target: chr2; HSP #1
Raw Score: 221; E-Value: 1e-121
Query Start/End: Original strand, 19 - 269
Target Start/End: Original strand, 40056278 - 40056527
Alignment:
Q  19 aacggcacgtaagtgccattgaactattagataatgggagaattacactcacctccgctgaggtttatgaaaacgacactaacaccccttctagtttcaa 118  Q
    ||||||||||||||||||||||||||||||||||||||| ||||||||||||||||||||||||||||||||| ||||||||||||||||||||||||||    
T  40056278 aacggcacgtaagtgccattgaactattagataatgggaaaattacactcacctccgctgaggtttatgaaaatgacactaacaccccttctagtttcaa 40056377  T
Q  119 aacttacattaacctcccttaagttctcatataatagacaatcacatcccttgttttctaagacagttaactttctgttaatttctttagagaattttcc 218  Q
    |||||||||||||||||||||||||||||||||||||||||||||||||||||||| |||||||||||||||||||||||||||||||||||||||||||    
T  40056378 aacttacattaacctcccttaagttctcatataatagacaatcacatcccttgtttgctaagacagttaactttctgttaatttctttagagaattttcc 40056477  T
Q  219 actaatatttaac-gtggttcttcattattgttgtatagtttgcttcctctc 269  Q
    ||||||||||||| ||||||||||||||||||||  ||||||||||||||||    
T  40056478 actaatatttaacggtggttcttcattattgttg--tagtttgcttcctctc 40056527  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #2
Raw Score: 50; E-Value: 1e-19
Query Start/End: Original strand, 54 - 143
Target Start/End: Original strand, 38356837 - 38356926
Alignment:
Q  54 gggagaattacactcacctccgctgaggtttatgaaaacgacactaacaccccttctagtttcaaaacttacattaacctcccttaagtt 143  Q
    |||| |||||||||||||||| ||||||| ||| || | ||||| |||||||| |||||||| ||||| |||||||||||||||||||||    
T  38356837 gggaaaattacactcacctcccctgaggtctattaatatgacacaaacaccccctctagttttaaaacatacattaacctcccttaagtt 38356926  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #3
Raw Score: 45; E-Value: 1e-16
Query Start/End: Original strand, 59 - 143
Target Start/End: Original strand, 35063612 - 35063696
Alignment:
Q  59 aattacactcacctccgctgaggtttatgaaaacgacactaacaccccttctagtttcaaaacttacattaacctcccttaagtt 143  Q
    ||||||||||||||||  |||||||||| |||| | |||| |||| || |||||||| ||||||||||| |||||||||||||||    
T  35063612 aattacactcacctcccttgaggtttattaaaatgtcactgacactccctctagttttaaaacttacatgaacctcccttaagtt 35063696  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #4
Raw Score: 42; E-Value: 0.000000000000007
Query Start/End: Original strand, 42 - 170
Target Start/End: Original strand, 1299954 - 1300080
Alignment:
Q  42 ctattagataatgggagaattacactcacctccgctgaggtttatgaaaacgacactaacaccccttctagtttcaaaacttacattaacctcccttaag 141  Q
    ||||||| ||||| || ||||||||||||||||  ||| |||||| |||| |||||  ||||||||||||||||||||||| ||  ||||||| || | |    
T  1299954 ctattagctaatgagaaaattacactcacctcctttgaagtttattaaaatgacac--acaccccttctagtttcaaaactaacgctaacctctctaatg 1300051  T
Q  142 ttctcatataatagacaatcacatccctt 170  Q
    |||| ||  ||||||||| ||| ||||||    
T  1300052 ttctaatgaaatagacaaacacctccctt 1300080  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #5
Raw Score: 41; E-Value: 0.00000000000003
Query Start/End: Original strand, 59 - 143
Target Start/End: Complemental strand, 29453727 - 29453643
Alignment:
Q  59 aattacactcacctccgctgaggtttatgaaaacgacactaacaccccttctagtttcaaaacttacattaacctcccttaagtt 143  Q
    ||||||| |||| ||| | ||||||||||||||  ||||||||||| | ||||||||  |||||||||||||||||| |||||||    
T  29453727 aattacattcacatcccccgaggtttatgaaaataacactaacacctcctctagttttgaaacttacattaacctcctttaagtt 29453643  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #6
Raw Score: 35; E-Value: 0.0000000001
Query Start/End: Original strand, 81 - 163
Target Start/End: Complemental strand, 45513131 - 45513049
Alignment:
Q  81 gtttatgaaaacgacactaacaccccttctagtttcaaaacttacattaacctcccttaagttctcatataatagacaatcac 163  Q
    |||||| |||||||||   ||||||| ||||||||| ||||| ||||||||||||| |||||| | ||  |||||||||||||    
T  45513131 gtttattaaaacgacatcgacaccccctctagtttcgaaactaacattaacctcccgtaagttttaatcaaatagacaatcac 45513049  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4 (Bit Score: 60; Significance: 1e-25; HSPs: 7)
Name: chr4
Description:

Target: chr4; HSP #1
Raw Score: 60; E-Value: 1e-25
Query Start/End: Original strand, 110 - 248
Target Start/End: Complemental strand, 39485067 - 39484928
Alignment:
Q  110 tagtttcaaaacttacattaacctcccttaagttctcatataatagacaatcacatcccttgttttctaagacagttaactttctgttaatttctttaga 209  Q
    ||||||||||||||||| ||||||| ||||||||||||| ||||| | || |||||||||| |||  ||| || ||||| || |||||| ||||||||||    
T  39485067 tagtttcaaaacttacactaacctcgcttaagttctcatgtaataaataagcacatcccttctttgttaacactgttaaattactgttactttctttaga 39484968  T
Q  210 gaattttccactaatatttaac-gtggttcttcattattg 248  Q
    || ||||||| ||||||||||| | ||||||||| |||||    
T  39484967 gatttttccattaatatttaacggaggttcttcaatattg 39484928  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #2
Raw Score: 44; E-Value: 4e-16
Query Start/End: Original strand, 59 - 170
Target Start/End: Complemental strand, 32642015 - 32641905
Alignment:
Q  59 aattacactcacctccgctgaggtttatgaaaacgacactaacaccccttctagtttcaaaacttacattaacctcccttaagttctcatataatagaca 158  Q
    |||||||||||||||| | || || |||| ||| ||||||||| |||||| || ||| |||||||| ||||||||||||||| |||||||| |||||||     
T  32642015 aattacactcacctcccccgaagtctatgtaaatgacactaacccccctt-taattttaaaacttatattaacctcccttaaattctcataaaatagact 32641917  T
Q  159 atcacatccctt 170  Q
    | |||| |||||    
T  32641916 aacacacccctt 32641905  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #3
Raw Score: 42; E-Value: 0.000000000000007
Query Start/End: Original strand, 54 - 199
Target Start/End: Original strand, 12007454 - 12007599
Alignment:
Q  54 gggagaattacactcacctccgctgaggtttatgaaaacgacactaacaccccttctagtttcaaaacttacattaacctcccttaagttctcatataat 153  Q
    |||| ||||||||  |||||| ||  ||||||  |||| |||||| ||||||| |||||||| ||||| |||||||||||| |||||||||||||  |||    
T  12007454 gggaaaattacaccaacctcccctatggtttactaaaatgacactgacaccccctctagttttaaaacatacattaacctcacttaagttctcatcaaat 12007553  T
Q  154 agacaatcacatcccttgttttctaagacagttaactttctgttaa 199  Q
    | |||| ||| |||||| ||   ||| ||  |||||||||||||||    
T  12007554 acacaaacacctccctttttcattaacaccattaactttctgttaa 12007599  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #4
Raw Score: 36; E-Value: 0.00000000003
Query Start/End: Original strand, 93 - 148
Target Start/End: Complemental strand, 50072075 - 50072020
Alignment:
Q  93 gacactaacaccccttctagtttcaaaacttacattaacctcccttaagttctcat 148  Q
    |||||||||||||| | |||||| ||||||||||  ||||||||||||||||||||    
T  50072075 gacactaacaccccctttagttttaaaacttacacaaacctcccttaagttctcat 50072020  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #5
Raw Score: 35; E-Value: 0.0000000001
Query Start/End: Original strand, 54 - 140
Target Start/End: Complemental strand, 12008005 - 12007919
Alignment:
Q  54 gggagaattacactcacctccgctgaggtttatgaaaacgacactaacaccccttctagtttcaaaacttacattaacctcccttaa 140  Q
    |||| |||||||| ||||||| || || ||||  |||| |||||| ||||||| |||| ||| |||||||||| |||||||||||||    
T  12008005 gggaaaattacacacacctcccctaagatttactaaaatgacactgacaccccctctaattttaaaacttacactaacctcccttaa 12007919  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #6
Raw Score: 34; E-Value: 0.0000000004
Query Start/End: Original strand, 54 - 155
Target Start/End: Original strand, 32641168 - 32641269
Alignment:
Q  54 gggagaattacactcacctccgctgaggtttatgaaaacgacactaacaccccttctagtttcaaaacttacattaacctcccttaagttctcatataat 153  Q
    |||| |||||||| ||||||  |||| || |||| ||| |||||| ||||| | |||| ||| |||| ||||| |||| ||||||||||||||||| |||    
T  32641168 gggataattacacccacctctcctgaagtctatgtaaatgacactgacacctcctctaattttaaaaattacactaacatcccttaagttctcataaaat 32641267  T
Q  154 ag 155  Q
    ||    
T  32641268 ag 32641269  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #7
Raw Score: 33; E-Value: 0.000000002
Query Start/End: Original strand, 54 - 122
Target Start/End: Complemental strand, 2487040 - 2486972
Alignment:
Q  54 gggagaattacactcacctccgctgaggtttatgaaaacgacactaacaccccttctagtttcaaaact 122  Q
    |||| ||||||| | |||||| || |||| ||| ||||||||||| |||||||||||||||| ||||||    
T  2487040 gggaaaattacaatgacctccactaaggtctattaaaacgacactgacaccccttctagttttaaaact 2486972  T

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Target: scaffold0119 (Bit Score: 53; Significance: 2e-21; HSPs: 1)
Name: scaffold0119
Description:

Target: scaffold0119; HSP #1
Raw Score: 53; E-Value: 2e-21
Query Start/End: Original strand, 42 - 193
Target Start/End: Complemental strand, 185 - 36
Alignment:
Q  42 ctattagataatgggagaattacactcacctccgctgaggtttatgaaaacgacactaacaccccttctagtttcaaaacttacattaacctcccttaag 141  Q
    ||||||| ||||| || ||||||||||||||||  |||||||||| |||| |||||  ||||||||||||||||||||||| ||  |||||||||| | |    
T  185 ctattagctaatgagaaaattacactcacctcccttgaggtttattaaaatgacac--acaccccttctagtttcaaaactaacggtaacctccctaatg 88  T
Q  142 ttctcatataatagacaatcacatcccttgttttctaagacagttaactttc 193  Q
    |||| ||  ||||||||| ||| |||||| |||  ||| || ||||||||||    
T  87 ttctaatgaaatagacaaacacctcccttctttattaacaccgttaactttc 36  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6 (Bit Score: 53; Significance: 2e-21; HSPs: 2)
Name: chr6
Description:

Target: chr6; HSP #1
Raw Score: 53; E-Value: 2e-21
Query Start/End: Original strand, 42 - 193
Target Start/End: Original strand, 26670609 - 26670758
Alignment:
Q  42 ctattagataatgggagaattacactcacctccgctgaggtttatgaaaacgacactaacaccccttctagtttcaaaacttacattaacctcccttaag 141  Q
    ||||||| ||||| || ||||||||||||||||  |||||||||| |||| |||||  ||||||||||||||||||||||| ||  |||||||||| | |    
T  26670609 ctattagctaatgagaaaattacactcacctcccttgaggtttattaaaatgacac--acaccccttctagtttcaaaactaacggtaacctccctaatg 26670706  T
Q  142 ttctcatataatagacaatcacatcccttgttttctaagacagttaactttc 193  Q
    |||| ||  ||||||||| ||| |||||| |||  ||| || ||||||||||    
T  26670707 ttctaatgaaatagacaaacacctcccttctttattaacaccgttaactttc 26670758  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #2
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 82 - 143
Target Start/End: Original strand, 12029351 - 12029412
Alignment:
Q  82 tttatgaaaacgacactaacaccccttctagtttcaaaacttacattaacctcccttaagtt 143  Q
    ||||| |||| |||||||||||||  |||||||||||||   |||||||| |||||||||||    
T  12029351 tttattaaaatgacactaacaccctctctagtttcaaaatgaacattaacatcccttaagtt 12029412  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8 (Bit Score: 48; Significance: 2e-18; HSPs: 5)
Name: chr8
Description:

Target: chr8; HSP #1
Raw Score: 48; E-Value: 2e-18
Query Start/End: Original strand, 54 - 157
Target Start/End: Complemental strand, 41456155 - 41456052
Alignment:
Q  54 gggagaattacactcacctccgctgaggtttatgaaaacgacactaacaccccttctagtttcaaaacttacattaacctcccttaagttctcatataat 153  Q
    |||| |||||||||||||||| ||||||| |||||||| |||||| ||| | | |||| |||  ||||||||| ||||||||||||||||||| || |||    
T  41456155 gggataattacactcacctcccctgaggtctatgaaaatgacactgacatctcctctaatttttaaacttacactaacctcccttaagttctcgtaaaat 41456056  T
Q  154 agac 157  Q
    ||||    
T  41456055 agac 41456052  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #2
Raw Score: 34; E-Value: 0.0000000004
Query Start/End: Original strand, 79 - 148
Target Start/End: Complemental strand, 13231912 - 13231843
Alignment:
Q  79 aggtttatgaaaacgacactaacaccccttctagtttcaaaacttacattaacctcccttaagttctcat 148  Q
    |||||||  |||| |||||| ||||||| |||| ||| |||||||||| ||||||||||| |||||||||    
T  13231912 aggtttactaaaatgacactgacaccccctctaattttaaaacttacactaacctccctttagttctcat 13231843  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #3
Raw Score: 33; E-Value: 0.000000002
Query Start/End: Original strand, 79 - 159
Target Start/End: Complemental strand, 2623312 - 2623232
Alignment:
Q  79 aggtttatgaaaacgacactaacaccccttctagtttcaaaacttacattaacctcccttaagttctcatataatagacaa 159  Q
    |||||||| |||| |||||| ||| ||| |||| ||| |||||||||| ||||||||||| |||| ||||  |||||||||    
T  2623312 aggtttattaaaatgacactgacatcccatctaattttaaaacttacactaacctcccttgagttttcatcaaatagacaa 2623232  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #4
Raw Score: 33; E-Value: 0.000000002
Query Start/End: Original strand, 59 - 143
Target Start/End: Original strand, 7043101 - 7043185
Alignment:
Q  59 aattacactcacctccgctgaggtttatgaaaacgacactaacaccccttctagtttcaaaacttacattaacctcccttaagtt 143  Q
    |||| ||||||||||| || |||||||| |||| | |||||||||| | |||||||| ||||   | ||||||||||||||||||    
T  7043101 aattgcactcacctcccctaaggtttattaaaatggcactaacaccacctctagttttaaaatgaatattaacctcccttaagtt 7043185  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #5
Raw Score: 31; E-Value: 0.00000002
Query Start/End: Original strand, 93 - 143
Target Start/End: Original strand, 35595 - 35645
Alignment:
Q  93 gacactaacaccccttctagtttcaaaacttacattaacctcccttaagtt 143  Q
    ||||| ||||||| || |||||| ||||||||||||||||| |||||||||    
T  35595 gacacaaacaccctttttagttttaaaacttacattaaccttccttaagtt 35645  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1 (Bit Score: 46; Significance: 3e-17; HSPs: 6)
Name: chr1
Description:

Target: chr1; HSP #1
Raw Score: 46; E-Value: 3e-17
Query Start/End: Original strand, 59 - 140
Target Start/End: Original strand, 28651687 - 28651768
Alignment:
Q  59 aattacactcacctccgctgaggtttatgaaaacgacactaacaccccttctagtttcaaaacttacattaacctcccttaa 140  Q
    ||||||| |||||||| ||||||| ||| |||| |||||| ||||||| |||| ||| ||||||||||||||||||||||||    
T  28651687 aattacaatcacctcccctgaggtctattaaaatgacactgacaccccctctatttttaaaacttacattaacctcccttaa 28651768  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #2
Raw Score: 42; E-Value: 0.000000000000007
Query Start/End: Original strand, 54 - 171
Target Start/End: Original strand, 27818728 - 27818844
Alignment:
Q  54 gggagaattacactcacctccgctgaggtttatgaaaacgacactaacaccccttctagtttcaaaacttacattaacctcccttaagttctcatataat 153  Q
    |||| |||||||||||||||| ||| | |||||||||| |||||||||||||  |||||||| ||||| |||||| || |||||||| || || | ||||    
T  27818728 gggaaaattacactcacctcccctg-gatttatgaaaatgacactaacaccctctctagttttaaaacatacatttacatcccttaaattttcctttaat 27818826  T
Q  154 agacaatcacatcccttg 171  Q
    |||||  ||| |||||||    
T  27818827 agacagacacctcccttg 27818844  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #3
Raw Score: 41; E-Value: 0.00000000000003
Query Start/End: Original strand, 59 - 143
Target Start/End: Complemental strand, 25476167 - 25476083
Alignment:
Q  59 aattacactcacctccgctgaggtttatgaaaacgacactaacaccccttctagtttcaaaacttacattaacctcccttaagtt 143  Q
    ||||||| |||||||| ||||||||||| |||| |||||| |||| || |||||||| ||||||||||  ||||||||| |||||    
T  25476167 aattacattcacctcccctgaggtttattaaaatgacactgacactccctctagttttaaaacttacacgaacctccctcaagtt 25476083  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #4
Raw Score: 39; E-Value: 0.0000000000004
Query Start/End: Original strand, 94 - 168
Target Start/End: Original strand, 48621163 - 48621237
Alignment:
Q  94 acactaacaccccttctagtttcaaaacttacattaacctcccttaagttctcatataatagacaatcacatccc 168  Q
    ||||| ||||||| |||||||| |||  ||||||||| |||||||||||| |||| |||||||||| ||||||||    
T  48621163 acactgacaccccctctagttttaaattttacattaatctcccttaagttatcatgtaatagacaaacacatccc 48621237  T

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Target: chr1; HSP #5
Raw Score: 32; E-Value: 0.000000006
Query Start/End: Original strand, 59 - 170
Target Start/End: Complemental strand, 44634145 - 44634034
Alignment:
Q  59 aattacactcacctccgctgaggtttatgaaaacgacactaacaccccttctagtttcaaaacttacattaacctcccttaagttctcatataatagaca 158  Q
    |||| ||||||||||| || | |||||  |||| |||| | ||||||| |||||||| |||||  | |  ||||||||||||||||||||  |||| |||    
T  44634145 aattgcactcacctcccctaaagtttactaaaatgacattgacaccccctctagttttaaaacaaataccaacctcccttaagttctcatcaaatataca 44634046  T
Q  159 atcacatccctt 170  Q
    ||||| ||||||    
T  44634045 atcacctccctt 44634034  T

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Target: chr1; HSP #6
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 93 - 170
Target Start/End: Complemental strand, 48621918 - 48621841
Alignment:
Q  93 gacactaacaccccttctagtttcaaaacttacattaacctcccttaagttctcatataatagacaatcacatccctt 170  Q
    ||||| |||||||| | |||||| ||||| |||| |||||||||||||||| |  | ||||| |||||||| ||||||    
T  48621918 gacaccaacaccccctttagtttaaaaacatacactaacctcccttaagtttttttgtaatacacaatcacctccctt 48621841  T

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Target: chr5 (Bit Score: 42; Significance: 0.000000000000007; HSPs: 5)
Name: chr5
Description:

Target: chr5; HSP #1
Raw Score: 42; E-Value: 0.000000000000007
Query Start/End: Original strand, 62 - 143
Target Start/End: Complemental strand, 24154051 - 24153970
Alignment:
Q  62 tacactcacctccgctgaggtttatgaaaacgacactaacaccccttctagtttcaaaacttacattaacctcccttaagtt 143  Q
    ||||||||||||| || |||||||| |||| |||| | | ||||| |||||||| |||||| ||||||||||||||||||||    
T  24154051 tacactcacctcccctaaggtttattaaaatgacagttagaccccctctagttttaaaactaacattaacctcccttaagtt 24153970  T

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Target: chr5; HSP #2
Raw Score: 33; E-Value: 0.000000002
Query Start/End: Original strand, 52 - 148
Target Start/End: Original strand, 17115698 - 17115794
Alignment:
Q  52 atgggagaattacactcacctccgctgaggtttatgaaaacgacactaacaccccttctagtttcaaaacttacattaacctcccttaagttctcat 148  Q
    |||||| |||||| ||||||||| ||||| |   |  ||| ||||||||||||   |||||||| ||||||||||  ||||||||||||||||||||    
T  17115698 atgggaaaattactctcacctcctctgagttacgttgaaatgacactaacaccaactctagttttaaaacttacaccaacctcccttaagttctcat 17115794  T

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Target: chr5; HSP #3
Raw Score: 32; E-Value: 0.000000006
Query Start/End: Original strand, 59 - 170
Target Start/End: Complemental strand, 31079831 - 31079720
Alignment:
Q  59 aattacactcacctccgctgaggtttatgaaaacgacactaacaccccttctagtttcaaaacttacattaacctcccttaagttctcatataatagaca 158  Q
    |||| |||| |||||| || |||||||| |||| | ||||||||||   |||||||| ||||   |||||||||||||||| ||| |||   ||||||||    
T  31079831 aattgcacttacctcccctaaggtttattaaaatggcactaacaccttctctagttttaaaatgaacattaacctcccttaggttttcagcaaatagaca 31079732  T
Q  159 atcacatccctt 170  Q
    | ||||||||||    
T  31079731 aacacatccctt 31079720  T

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Target: chr5; HSP #4
Raw Score: 29; E-Value: 0.0000004
Query Start/End: Original strand, 54 - 170
Target Start/End: Original strand, 24153192 - 24153308
Alignment:
Q  54 gggagaattacactcacctccgctgaggtttatgaaaacgacactaacaccccttctagtttcaaaacttacattaacctcccttaagttctcatataat 153  Q
    |||| |||||||||||||| |  |||||| ||| |||| || ||  ||||||  |||||||| |||| | ||| |||||||||||||||||| ||  |||    
T  24153192 gggaaaattacactcaccttccttgaggtctattaaaatgagacagacacccactctagttttaaaagtaacactaacctcccttaagttctaatgaaat 24153291  T
Q  154 agacaatcacatccctt 170  Q
     ||||| ||| ||||||    
T  24153292 ggacaaacacctccctt 24153308  T

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Target: chr5; HSP #5
Raw Score: 29; E-Value: 0.0000004
Query Start/End: Original strand, 79 - 135
Target Start/End: Original strand, 29108111 - 29108166
Alignment:
Q  79 aggtttatgaaaacgacactaacaccccttctagtttcaaaacttacattaacctcc 135  Q
    |||||||  |||| |||||||||||||| |||||||| |||||||||| ||||||||    
T  29108111 aggtttacaaaaatgacactaacacccc-tctagttttaaaacttacactaacctcc 29108166  T

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Target: chr3 (Bit Score: 42; Significance: 0.000000000000007; HSPs: 8)
Name: chr3
Description:

Target: chr3; HSP #1
Raw Score: 42; E-Value: 0.000000000000007
Query Start/End: Original strand, 54 - 143
Target Start/End: Original strand, 45004705 - 45004794
Alignment:
Q  54 gggagaattacactcacctccgctgaggtttatgaaaacgacactaacaccccttctagtttcaaaacttacattaacctcccttaagtt 143  Q
    |||| |||||||||||||||| ||||||||||| |||| | || | ||||||| | |||||| ||| ||||||| |||||||||||||||    
T  45004705 gggaaaattacactcacctcctctgaggtttattaaaatgtcaatgacaccccctttagttttaaatcttacatgaacctcccttaagtt 45004794  T

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Target: chr3; HSP #2
Raw Score: 37; E-Value: 0.000000000006
Query Start/End: Original strand, 78 - 170
Target Start/End: Complemental strand, 45146755 - 45146663
Alignment:
Q  78 gaggtttatgaaaacgacactaacaccccttctagtttcaaaacttacattaacctcccttaagttctcatataatagacaatcacatccctt 170  Q
    ||||||||| |||| ||||| |||| |||||||| ||| |||||| ||| |||||||||||| ||||| ||  ||||||||| ||| ||||||    
T  45146755 gaggtttattaaaatgacacaaacatcccttctaattttaaaactaacactaacctcccttatgttctaatgaaatagacaaacacctccctt 45146663  T

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Target: chr3; HSP #3
Raw Score: 33; E-Value: 0.000000002
Query Start/End: Original strand, 59 - 139
Target Start/End: Complemental strand, 51489933 - 51489853
Alignment:
Q  59 aattacactcacctccgctgaggtttatgaaaacgacactaacaccccttctagtttcaaaacttacattaacctccctta 139  Q
    |||| ||||||||||| || |||||||| |||| | |||||||||||| |||||||| ||||   | ||||||||||||||    
T  51489933 aattgcactcacctcccctaaggtttattaaaatggcactaacaccccctctagttttaaaatgaatattaacctccctta 51489853  T

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Target: chr3; HSP #4
Raw Score: 32; E-Value: 0.000000006
Query Start/End: Original strand, 93 - 148
Target Start/End: Original strand, 50766027 - 50766082
Alignment:
Q  93 gacactaacaccccttctagtttcaaaacttacattaacctcccttaagttctcat 148  Q
    |||||||||||||| |||||||| ||||| |||| ||| |||||||||||| ||||    
T  50766027 gacactaacaccccctctagtttgaaaacctacactaatctcccttaagttttcat 50766082  T

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Target: chr3; HSP #5
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 59 - 148
Target Start/End: Original strand, 50823970 - 50824059
Alignment:
Q  59 aattacactcacctccgctgaggtttatgaaaacgacactaacaccccttctagtttcaaaacttacattaacctcccttaagttctcat 148  Q
    |||||||  |||||||  |||| |||||  ||| |||||||||||||  |||||||| ||||| |||| |||||||| ||||||| ||||    
T  50823970 aattacatccacctcccttgagttttatctaaatgacactaacaccctctctagtttgaaaacctacactaacctcctttaagttttcat 50824059  T

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Target: chr3; HSP #6
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 59 - 148
Target Start/End: Complemental strand, 50851890 - 50851801
Alignment:
Q  59 aattacactcacctccgctgaggtttatgaaaacgacactaacaccccttctagtttcaaaacttacattaacctcccttaagttctcat 148  Q
    |||||||  |||||||  |||| |||||  ||| |||||||||||||  |||||||| ||||| |||| |||||||| ||||||| ||||    
T  50851890 aattacatccacctcccttgagttttatctaaatgacactaacaccctctctagtttgaaaacctacactaacctcctttaagttttcat 50851801  T

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Target: chr3; HSP #7
Raw Score: 29; E-Value: 0.0000004
Query Start/End: Original strand, 82 - 138
Target Start/End: Complemental strand, 35744591 - 35744535
Alignment:
Q  82 tttatgaaaacgacactaacaccccttctagtttcaaaacttacattaacctccctt 138  Q
    ||||| ||||||||| | ||| ||| |||| |||||||||| |||||||||||||||    
T  35744591 tttattaaaacgacaatgacatcccctctaatttcaaaactaacattaacctccctt 35744535  T

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Target: chr3; HSP #8
Raw Score: 29; E-Value: 0.0000004
Query Start/End: Original strand, 67 - 159
Target Start/End: Complemental strand, 45005597 - 45005505
Alignment:
Q  67 tcacctccgctgaggtttatgaaaacgacactaacaccccttctagtttcaaaacttacattaacctcccttaagttctcatataatagacaa 159  Q
    ||||||||  |||||||||| |||| ||||||||||   |  ||||||| |||||| ||| | | |||||||||||||||||  |||||||||    
T  45005597 tcacctcccttgaggtttattaaaatgacactaacatttccactagttttaaaactcacactgatctcccttaagttctcatcaaatagacaa 45005505  T

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Target: chr7 (Bit Score: 34; Significance: 0.0000000004; HSPs: 2)
Name: chr7
Description:

Target: chr7; HSP #1
Raw Score: 34; E-Value: 0.0000000004
Query Start/End: Original strand, 59 - 140
Target Start/End: Complemental strand, 24556054 - 24555973
Alignment:
Q  59 aattacactcacctccgctgaggtttatgaaaacgacactaacaccccttctagtttcaaaacttacattaacctcccttaa 140  Q
    ||||||||| |||||| ||||||||| |  ||||||||| |||||||| |||||||| | ||   |||||||||||||||||    
T  24556054 aattacactaacctcccctgaggtttgttcaaacgacacaaacaccccctctagtttaataatagacattaacctcccttaa 24555973  T

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Target: chr7; HSP #2
Raw Score: 34; E-Value: 0.0000000004
Query Start/End: Original strand, 82 - 143
Target Start/End: Original strand, 35263740 - 35263801
Alignment:
Q  82 tttatgaaaacgacactaacaccccttctagtttcaaaacttacattaacctcccttaagtt 143  Q
    |||||||||| |||| ||||| || ||||| |||  ||||||||||||||||||||||||||    
T  35263740 tttatgaaaatgacattaacatcctttctaattttgaaacttacattaacctcccttaagtt 35263801  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]



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