View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF4600_high_9 (Length: 280)
Name: NF4600_high_9
Description: NF4600
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF4600_high_9 |
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| [»] chr5 (1 HSPs) |
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Alignment Details
Target: chr5 (Bit Score: 224; Significance: 1e-123; HSPs: 1)
Name: chr5
Description:
Target: chr5; HSP #1
Raw Score: 224; E-Value: 1e-123
Query Start/End: Original strand, 32 - 280
Target Start/End: Original strand, 29907253 - 29907509
Alignment:
| Q |
32 |
accacaaaacaaactttttattacacacgattaaaacatgtctataattcttataagtatagcaacatagaacacaaataaactatagcatggaaacaat |
131 |
Q |
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| T |
29907253 |
accacaaaacaaactttttattacacacgattaaaacatgtctataattcttataagtatagcaacatagaacacaaataaactatagcatggaaacaat |
29907352 |
T |
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| Q |
132 |
agattagaaagtt--------acatacgtaaatacatcacatttctcgtgagaccgcatgaggatataaagcaaaatacatcacatttcaatccttgaca |
223 |
Q |
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| T |
29907353 |
agattagaaagttcagcagcaacatacgtaaacacatcacatttctcgtgagaccgcatgaggatataaagcaaaatacatcacatttcaatccttgaca |
29907452 |
T |
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| Q |
224 |
accttagcagacttggctgatttctttgacctcttccgagaaacctcatcaaatcct |
280 |
Q |
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||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
29907453 |
accttagcagacttggctgatttctttgacctcttccgagaaacctcatcaaatcct |
29907509 |
T |
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