View Alignment

This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.

Legend
 Query
 Query hiting target  Query hiting target's complemental strand
 Query's complemental strand hiting target  Query's complemental strand hiting target's complemental strand

Alignment Overview

Query: NF4600_low_1 (Length: 449)

Name: NF4600_low_1
Description: NF4600
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)


[»] NF4600_low_1
NF4600_low_1
[»] chr3 (16 HSPs)
chr3 (11-249)||(767197-767435)
chr3 (263-437)||(767682-767856)
chr3 (275-437)||(9594029-9594192)
chr3 (321-426)||(2477103-2477208)
chr3 (92-204)||(2475031-2475143)
chr3 (263-437)||(2636188-2636362)
chr3 (291-437)||(2643803-2643949)
chr3 (269-419)||(2658621-2658772)
chr3 (325-423)||(746123-746221)
chr3 (263-437)||(7323842-7324016)
chr3 (264-398)||(2502594-2502728)
chr3 (263-338)||(7318362-7318437)
chr3 (313-418)||(9561439-9561552)
chr3 (265-322)||(7333788-7333845)
chr3 (377-437)||(7318438-7318498)
chr3 (377-437)||(13498736-13498796)
[»] scaffold0097 (1 HSPs)
scaffold0097 (331-437)||(34370-34476)
[»] chr2 (3 HSPs)
chr2 (380-437)||(33027115-33027172)
chr2 (380-437)||(33038687-33038744)
chr2 (380-437)||(33020807-33020864)


Alignment Details
Target: chr3 (Bit Score: 227; Significance: 1e-125; HSPs: 16)
Name: chr3
Description:

Target: chr3; HSP #1
Raw Score: 227; E-Value: 1e-125
Query Start/End: Original strand, 11 - 249
Target Start/End: Original strand, 767197 - 767435
Alignment:
Q  11 cagagaccttttgtatcaacacataagtgctctagaaagacaattatttaagtaatatctaaatgtcgaaaccttctcaaagaaagtggtacctaaatgt 110  Q
    |||||||||||||||||| |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  767197 cagagaccttttgtatcagcacataagtgctctagaaagacaattatttaagtaatatctaaatgtcgaaaccttctcaaagaaagtggtacctaaatgt 767296  T
Q  111 cgaaacatgttcaaagagaaaagaaaagaatttcataaggaaaaaagagcacattgacatggttctaaggttctattggaagagtcatagatatcacata 210  Q
    ||||||||||||||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  767297 cgaaacatgttcaaagacaaaagaaaagaatttcataaggaaaaaagagcacattgacatggttctaaggttctattggaagagtcatagatatcacata 767396  T
Q  211 attaaaataatagaatgaaacaccacttcattataagaa 249  Q
    ||||||| |||||||||||||||||||||||||||||||    
T  767397 attaaaaaaatagaatgaaacaccacttcattataagaa 767435  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #2
Raw Score: 171; E-Value: 1e-91
Query Start/End: Original strand, 263 - 437
Target Start/End: Original strand, 767682 - 767856
Alignment:
Q  263 gtattctataacatatccagttttgtttataatgtattctgcaagatttgaaacaaacattaagaaatttgtgcaacactaagcagacattgtaacatct 362  Q
    ||||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  767682 gtattctgtaacatatccagttttgtttataatgtattctgcaagatttgaaacaaacattaagaaatttgtgcaacactaagcagacattgtaacatct 767781  T
Q  363 acaccataacacatatcttagaaaatcaaatgacaatccatttaatgcaattcatgattgtgaacaatttaaaat 437  Q
    |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  767782 acaccataacacatatcttagaaaatcaaatgacaatccatttaatgcaattcatgattgtgaacaatttaaaat 767856  T

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Target: chr3; HSP #3
Raw Score: 124; E-Value: 1e-63
Query Start/End: Original strand, 275 - 437
Target Start/End: Original strand, 9594029 - 9594192
Alignment:
Q  275 atatccagttttgtttataatgtattctgcaagatttgaaacaaacattaagaaatttgtgcaaca-ctaagcagacattgtaacatctacaccataaca 373  Q
    ||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |||||||  ||||| |||||||||||||||||||||||||||    
T  9594029 atatccagttttgtttataatgtattctgcaagatttgaaacaaacattaagaaattcgtgcaacgtctaagaagacattgtaacatctacaccataaca 9594128  T
Q  374 catatcttagaaaatcaaatgacaatccatttaatgcaattcatgattgtgaacaatttaaaat 437  Q
     |||||||||||||| ||||||||| | |||||||||||||||||||||||||| |||||||||    
T  9594129 gatatcttagaaaatgaaatgacaaactatttaatgcaattcatgattgtgaactatttaaaat 9594192  T

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Target: chr3; HSP #4
Raw Score: 82; E-Value: 1e-38
Query Start/End: Original strand, 321 - 426
Target Start/End: Complemental strand, 2477208 - 2477103
Alignment:
Q  321 attaagaaatttgtgcaacactaagcagacattgtaacatctacaccataacacatatcttagaaaatcaaatgacaatccatttaatgcaattcatgat 420  Q
    ||||||||||||||||||||||||||||||||| |||||||||||||||||| || |||||||||||||||||||||| | |||||| ||||||||||||    
T  2477208 attaagaaatttgtgcaacactaagcagacattataacatctacaccataacgcaaatcttagaaaatcaaatgacaaacaatttaaagcaattcatgat 2477109  T
Q  421 tgtgaa 426  Q
    ||||||    
T  2477108 tgtgaa 2477103  T

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Target: chr3; HSP #5
Raw Score: 81; E-Value: 6e-38
Query Start/End: Original strand, 92 - 204
Target Start/End: Complemental strand, 2475143 - 2475031
Alignment:
Q  92 gaaagtggtacctaaatgtcgaaacatgttcaaagagaaaagaaaagaatttcataaggaaaaaagagcacattgacatggttctaaggttctattggaa 191  Q
    |||||| ||||||||||||||||||||||||||| | | ||||||||  |||||||||||||||||||||||||||||||||||||| |||| |||||||    
T  2475143 gaaagtagtacctaaatgtcgaaacatgttcaaaaacagaagaaaaggttttcataaggaaaaaagagcacattgacatggttctaatgttccattggaa 2475044  T
Q  192 gagtcatagatat 204  Q
    |||||||||||||    
T  2475043 gagtcatagatat 2475031  T

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Target: chr3; HSP #6
Raw Score: 79; E-Value: 9e-37
Query Start/End: Original strand, 263 - 437
Target Start/End: Complemental strand, 2636362 - 2636188
Alignment:
Q  263 gtattctataacatatccagttttgtttataatgtattctgcaagatttgaaacaaacattaagaaatttgtgcaacactaagcagacattgtaacatct 362  Q
    ||||| ||| |||||| |||||| ||| |||||  ||| ||||| |||||||||||||||||| |||||||||||||||||||||| |||| | ||| ||    
T  2636362 gtattatatgacatattcagtttagttcataatccattgtgcaatatttgaaacaaacattaaaaaatttgtgcaacactaagcaggcattattacacct 2636263  T
Q  363 acaccataacacatatcttagaaaatcaaatgacaatccatttaatgcaattcatgattgtgaacaatttaaaat 437  Q
    |   |||||| || |||||||||||||||||||||| || |||||||||||| ||||||| |||| |||||||||    
T  2636262 aactcataacgcaaatcttagaaaatcaaatgacaaaccttttaatgcaattgatgattgcgaactatttaaaat 2636188  T

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Target: chr3; HSP #7
Raw Score: 75; E-Value: 2e-34
Query Start/End: Original strand, 291 - 437
Target Start/End: Original strand, 2643803 - 2643949
Alignment:
Q  291 ataatgtattctgcaagatttgaaacaaacattaagaaatttgtgcaacactaagcagacattgtaacatctacaccataacacatatcttagaaaatca 390  Q
    |||||| ||| ||||||||||||| ||||||||||||||||| ||||||||||||| |||||||||||||||||| | || | |  ||||||||||||||    
T  2643803 ataatgcattgtgcaagatttgaagcaaacattaagaaatttatgcaacactaagcggacattgtaacatctacatcttatcgcgaatcttagaaaatca 2643902  T
Q  391 aatgacaatccatttaatgcaattcatgattgtgaacaatttaaaat 437  Q
    |||||||| |  ||| |||||||| ||||||| |||| |||||||||    
T  2643903 aatgacaaacattttgatgcaattaatgattgcgaactatttaaaat 2643949  T

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Target: chr3; HSP #8
Raw Score: 68; E-Value: 3e-30
Query Start/End: Original strand, 269 - 419
Target Start/End: Original strand, 2658621 - 2658772
Alignment:
Q  269 tataacatatccagttttgtttataatgtattctgcaagatttgaaacaaacattaagaaatttgtgcaacactaagcagacattgtaacatctacacca 368  Q
    |||||||||| |||||| ||| |||||| | | ||||||||||||| |||||||||| | ||||||||||||||||||||||||| | |||||||   ||    
T  2658621 tataacatattcagtttggttcataatgcagtgtgcaagatttgaagcaaacattaaaacatttgtgcaacactaagcagacattattacatctaattca 2658720  T
Q  369 taacacatatcttag-aaaatcaaatgacaatccatttaatgcaattcatga 419  Q
    |||| || ||||||| |||||| |||||||| |||||||||| |||||||||    
T  2658721 taacgcaaatcttagaaaaatccaatgacaaaccatttaatgtaattcatga 2658772  T

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Target: chr3; HSP #9
Raw Score: 67; E-Value: 1e-29
Query Start/End: Original strand, 325 - 423
Target Start/End: Original strand, 746123 - 746221
Alignment:
Q  325 agaaatttgtgcaacactaagcagacattgtaacatctacaccataacacatatcttagaaaatcaaatgacaatccatttaatgcaattcatgattgt 423  Q
    ||||||||||||| ||||||||| ||| | |||||||||||||||||| || |||||||||||||||||||||| ||||| ||||||||||||||||||    
T  746123 agaaatttgtgcagcactaagcatacaatataacatctacaccataacgcaaatcttagaaaatcaaatgacaaaccattcaatgcaattcatgattgt 746221  T

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Target: chr3; HSP #10
Raw Score: 67; E-Value: 1e-29
Query Start/End: Original strand, 263 - 437
Target Start/End: Original strand, 7323842 - 7324016
Alignment:
Q  263 gtattctataacatatccagttttgtttataatgtattctgcaagatttgaaacaaacattaagaaatttgtgcaacactaagcagacattgtaacatct 362  Q
    ||||| ||||||||||  ||||| ||| |||||| ||| ||||||||||||| |||||||||| || ||||| |||||| ||||||||||| | ||||||    
T  7323842 gtattatataacatatttagtttagttcataatgcattgtgcaagatttgaagcaaacattaaaaattttgttcaacaccaagcagacattattacatct 7323941  T
Q  363 acaccataacacatatcttagaaaatcaaatgacaatccatttaatgcaattcatgattgtgaacaatttaaaat 437  Q
    | | |||||| || ||||||||||||| ||||||||  |||||||| ||||   ||||| ||||| |||||||||    
T  7323942 aaatcataacgcaaatcttagaaaatcgaatgacaaagcatttaatacaatatttgattttgaactatttaaaat 7324016  T

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Target: chr3; HSP #11
Raw Score: 59; E-Value: 8e-25
Query Start/End: Original strand, 264 - 398
Target Start/End: Complemental strand, 2502728 - 2502594
Alignment:
Q  264 tattctataacatatccagttttgtttataatgtattctgcaagatttgaaacaaacattaagaaatttgtgcaacactaagcagacattgtaacatcta 363  Q
    |||| |||||||||| |||||| ||| |||||| ||| ||||||||||||| |||||||||| |  | |||||||||| ||||||| ||| | |||||||    
T  2502728 tattatataacatattcagtttagttcataatgcattgtgcaagatttgaagcaaacattaaaatttctgtgcaacaccaagcagaaattattacatcta 2502629  T
Q  364 caccataacacatatcttagaaaatcaaatgacaa 398  Q
     | |||||| || ||||||||||||||||||||||    
T  2502628 aatcataacgcaaatcttagaaaatcaaatgacaa 2502594  T

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Target: chr3; HSP #12
Raw Score: 44; E-Value: 7e-16
Query Start/End: Original strand, 263 - 338
Target Start/End: Original strand, 7318362 - 7318437
Alignment:
Q  263 gtattctataacatatccagttttgtttataatgtattctgcaagatttgaaacaaacattaagaaatttgtgcaa 338  Q
    ||||| |||||||||| |||||| ||| |||||| ||| ||||||||||||| |||||||||| ||||||||||||    
T  7318362 gtattatataacatattcagtttagttcataatgcattgtgcaagatttgaagcaaacattaaaaaatttgtgcaa 7318437  T

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Target: chr3; HSP #13
Raw Score: 41; E-Value: 0.00000000000004
Query Start/End: Original strand, 313 - 418
Target Start/End: Original strand, 9561439 - 9561552
Alignment:
Q  313 aaacaaacattaagaaatttgtgcaacactaagcagacattgtaa--------catctacaccataacacatatcttagaaaatcaaatgacaatccatt 404  Q
    ||||||||||||||||| ||||||||||||||||| || || |||        |||||| | |||||| || |||||||||||||||| ||||| |||||    
T  9561439 aaacaaacattaagaaacttgtgcaacactaagcataccttataagtttataacatctaaatcataacccaaatcttagaaaatcaaaagacaaaccatt 9561538  T
Q  405 taatgcaattcatg 418  Q
    | ||||||||||||    
T  9561539 tcatgcaattcatg 9561552  T

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Target: chr3; HSP #14
Raw Score: 34; E-Value: 0.0000000006
Query Start/End: Original strand, 265 - 322
Target Start/End: Original strand, 7333788 - 7333845
Alignment:
Q  265 attctataacatatccagttttgtttataatgtattctgcaagatttgaaacaaacat 322  Q
    |||||||||||||| |||||| ||| |||||| ||| || ||||||||||||||||||    
T  7333788 attctataacatattcagtttagttcataatgcattgtgtaagatttgaaacaaacat 7333845  T

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Target: chr3; HSP #15
Raw Score: 29; E-Value: 0.0000006
Query Start/End: Original strand, 377 - 437
Target Start/End: Original strand, 7318438 - 7318498
Alignment:
Q  377 atcttagaaaatcaaatgacaatccatttaatgcaattcatgattgtgaacaatttaaaat 437  Q
    ||||||||||||| |||||||| |||| |||| ||||   ||||||||||| |||||||||    
T  7318438 atcttagaaaatcgaatgacaaaccatataattcaatatttgattgtgaactatttaaaat 7318498  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #16
Raw Score: 29; E-Value: 0.0000006
Query Start/End: Original strand, 377 - 437
Target Start/End: Complemental strand, 13498796 - 13498736
Alignment:
Q  377 atcttagaaaatcaaatgacaatccatttaatgcaattcatgattgtgaacaatttaaaat 437  Q
    ||||| |||||| |||||||||  |||||||| ||||||||||| |||||| |||| ||||    
T  13498796 atctttgaaaattaaatgacaaatcatttaatccaattcatgatcgtgaactatttgaaat 13498736  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: scaffold0097 (Bit Score: 67; Significance: 1e-29; HSPs: 1)
Name: scaffold0097
Description:

Target: scaffold0097; HSP #1
Raw Score: 67; E-Value: 1e-29
Query Start/End: Original strand, 331 - 437
Target Start/End: Complemental strand, 34476 - 34370
Alignment:
Q  331 ttgtgcaacactaagcagacattgtaacatctacaccataacacatatcttagaaaatcaaatgacaatccatttaatgcaattcatgattgtgaacaat 430  Q
    ||||||||||||||||||||||| | |||||||   |||||| || ||||||||||||| |||||||| |||||||||||||||||||||||||||| ||    
T  34476 ttgtgcaacactaagcagacattattacatctaattcataacgcaaatcttagaaaatccaatgacaaaccatttaatgcaattcatgattgtgaactat 34377  T
Q  431 ttaaaat 437  Q
    |||||||    
T  34376 ttaaaat 34370  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2 (Bit Score: 34; Significance: 0.0000000006; HSPs: 3)
Name: chr2
Description:

Target: chr2; HSP #1
Raw Score: 34; E-Value: 0.0000000006
Query Start/End: Original strand, 380 - 437
Target Start/End: Complemental strand, 33027172 - 33027115
Alignment:
Q  380 ttagaaaatcaaatgacaatccatttaatgcaattcatgattgtgaacaatttaaaat 437  Q
    ||||||||||||||||||| |||| |||||||||  || ||||||||| |||||||||    
T  33027172 ttagaaaatcaaatgacaaaccatctaatgcaatatataattgtgaactatttaaaat 33027115  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #2
Raw Score: 34; E-Value: 0.0000000006
Query Start/End: Original strand, 380 - 437
Target Start/End: Complemental strand, 33038744 - 33038687
Alignment:
Q  380 ttagaaaatcaaatgacaatccatttaatgcaattcatgattgtgaacaatttaaaat 437  Q
    ||||||||||||||||||| |||| |||| ||||  |||||||||||| |||||||||    
T  33038744 ttagaaaatcaaatgacaaaccatctaatacaatatatgattgtgaactatttaaaat 33038687  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #3
Raw Score: 30; E-Value: 0.0000002
Query Start/End: Original strand, 380 - 437
Target Start/End: Complemental strand, 33020864 - 33020807
Alignment:
Q  380 ttagaaaatcaaatgacaatccatttaatgcaattcatgattgtgaacaatttaaaat 437  Q
    ||||||||||||||||||| |||| |||| ||||  || ||||||||| |||||||||    
T  33020864 ttagaaaatcaaatgacaagccatctaatacaatatataattgtgaactatttaaaat 33020807  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]



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