View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF4600_low_2 (Length: 407)
Name: NF4600_low_2
Description: NF4600
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF4600_low_2 |
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Alignment Details
Target: chr3 (Bit Score: 371; Significance: 0; HSPs: 1)
Name: chr3
Description:
Target: chr3; HSP #1
Raw Score: 371; E-Value: 0
Query Start/End: Original strand, 14 - 392
Target Start/End: Complemental strand, 53477700 - 53477322
Alignment:
| Q |
14 |
catcacgtaatgtcgcttctcctttactatgatcaggttgcaacataaccaaacatggaataccttccacgtcatactttctgttcaatgctttctttgt |
113 |
Q |
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| T |
53477700 |
catcacgtaatgtcgcttctcctttactatgatcaggttgcaacataaccaaacatggaataccttccacgtcatactttctgttcaatgctttctttgt |
53477601 |
T |
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| Q |
114 |
ttccaaatcagaaaaaggaattgctagccaaggcatgtttccatagaaaccattaagggcatctaagtcttcgtcagaggatacatacactatctcaaat |
213 |
Q |
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| T |
53477600 |
ttccaaatcagaaaaaggaattgctagccaaggcatgtttccatagaaaccattaaaggcatctaagtcttcgtcggaggatacatacactatctcaaat |
53477501 |
T |
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| Q |
214 |
tgtgggatattgcttttgagttgctcgtagattccaatgagcaattgagtgaatccacgacatggtgggtaccagttggcagcgaataatagacctacta |
313 |
Q |
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| T |
53477500 |
tgtgggatattgcttttgagttgctcgtagattccaatgagcaattgagtgaatccacgacatggtgggtaccagttggcagcgaataatagacctacta |
53477401 |
T |
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| Q |
314 |
cttttccttcaagttctgatattttaacctacatgcaagaccaccatctacattaatgtaacatcttgtaaggaataat |
392 |
Q |
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| T |
53477400 |
cttttccttcaagttctgatattttaacctacatgcaagaccaccatctacattaatgtaacatcttgtaaggaataat |
53477322 |
T |
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