View Alignment

This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.

Legend
 Query
 Query hiting target  Query hiting target's complemental strand
 Query's complemental strand hiting target  Query's complemental strand hiting target's complemental strand

Alignment Overview

Query: NF4600_low_5 (Length: 348)

Name: NF4600_low_5
Description: NF4600
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)


[»] NF4600_low_5
NF4600_low_5
[»] chr4 (1 HSPs)
chr4 (31-348)||(55337144-55337457)


Alignment Details
Target: chr4 (Bit Score: 279; Significance: 1e-156; HSPs: 1)
Name: chr4
Description:

Target: chr4; HSP #1
Raw Score: 279; E-Value: 1e-156
Query Start/End: Original strand, 31 - 348
Target Start/End: Complemental strand, 55337457 - 55337144
Alignment:
Q  31 taatttcacatgacatgaactcattagcttcattttttaatactaaaaacatgttattttattgtgtgtatacaaatattcctacatttggtccataggt 130  Q
    ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  55337457 taatttcacatgacatgaactcattagcttcattttttaatactaaaaacatgttattttattgtgtgtatacaaatattcctacatttggtccataggt 55337358  T
Q  131 atctaagaacctatttgtttaatacctcccataactc-ttgtcttaaaaaattgaataaaactataacattacaagttgcactcatcctccctgtcacaa 229  Q
    ||||||||||||||||||||||||||||||||||||| ||||  |||||||||||||||||||||||||||||||||||||||||||||||||||||||     
T  55337357 atctaagaacctatttgtttaatacctcccataactctttgtactaaaaaattgaataaaactataacattacaagttgcactcatcctccctgtcaca- 55337259  T
Q  230 tagtatagtatatatataaacctttcctcactaacactaaacacaaagcaaaacataattaacatacgtacaatcatttcattttcatggcttccatgca 329  Q
        ||||||||||||||||||||||||||||||||||||||||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  55337258 ----atagtatatatataaacctttcctcactaacactaaacacaaatcaaaacataattaacatacgtacaatcatttcattttcatggcttccatgca 55337163  T
Q  330 cacctcaacttcttctttt 348  Q
    |||||||||||||||||||    
T  55337162 cacctcaacttcttctttt 55337144  T

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