View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF4601-Insertion-1 (Length: 887)
Name: NF4601-Insertion-1
Description: NF4601
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF4601-Insertion-1 |
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| [»] chr7 (2 HSPs) |
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Alignment Details
Target: chr7 (Bit Score: 753; Significance: 0; HSPs: 2)
Name: chr7
Description:
Target: chr7; HSP #1
Raw Score: 753; E-Value: 0
Query Start/End: Original strand, 6 - 887
Target Start/End: Complemental strand, 34355400 - 34354525
Alignment:
| Q |
6 |
catgaaatgtggccttcactttgcaaaatttattatgaagaactcaagagtacttagcgtcatgaccattcagagtcccaaatttactgatacaaacaca |
105 |
Q |
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||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||||||||||||||| || |
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| T |
34355400 |
catgaaatgtggccttcactttgcaaaatttattatgaagaactcaagagtacttagcgtcatgaccattcagagtcccgaatttactgatacaaacgca |
34355301 |
T |
|
| Q |
106 |
aagcatcgaatgttaatggaattatcttcgtgtcccaagagttcaacatgtaaacttttatttgagtgacagcagataatatgtagggcatgtatgtaat |
205 |
Q |
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||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |||||| |
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| T |
34355300 |
aagcatcgaatgttaatggaattatcttcgtgtcccaagagttcaacatgtaaacttttatttgagtgacagcagataatatgtagggcatgtgtgtaat |
34355201 |
T |
|
| Q |
206 |
agttcctaatctttagagaacatgtacattgtactctataatcatattcgttttgtggttgaataatcttgtgagttatttacagcagcaagtgtttcaa |
305 |
Q |
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||||||||||||||||||||||| |||||||||||||||||| ||||||||||||| ||||||||||||||||||||||||||||||||||||||||||| |
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| T |
34355200 |
agttcctaatctttagagaacatctacattgtactctataattatattcgttttgtagttgaataatcttgtgagttatttacagcagcaagtgtttcaa |
34355101 |
T |
|
| Q |
306 |
ttatcgtctcatttagctatcaatttgtgattattgtcaaggttattttaataattctagcaaatgatttgatatgtttaaagtcggtgatcgattaaan |
405 |
Q |
| |
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||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||| |
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| T |
34355100 |
ttatcgtctcatttagctatcaatttgtgattattgtcaaggttattttaataattctagcaaatgatttgatatgtttaaagtcggtgattaatt---- |
34355005 |
T |
|
| Q |
406 |
nnnnnnnnaggggaggtaattaaaattattgaaatattgagaaaatatttacgtatatatccaattctaaagcataattggttagtaaccgtgcacaaca |
505 |
Q |
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|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
34355004 |
-tttttttaggggaggtaattaaaattattgaaatattgagaaaatatttacgtatatatccaattctaaagcataattggttagtaaccgtgcacaaca |
34354906 |
T |
|
| Q |
506 |
aacacatacggtggagnnnnnnnnaggattccatttagggataggaaaaagctaaagtgcacgatataaaaattcgtcaaagttgcacgaacgtggtgtt |
605 |
Q |
| |
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|||||||||||||||| ||||||||||||||||| ||||||||||||||||||||||||||||||||||||||||||||| |||||||||||| |
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| T |
34354905 |
aacacatacggtggagttttttttaggattccatttagggaaaggaaaaagctaaagtgcacgatataaaaattcgtcaaagttgcatgaacgtggtgtt |
34354806 |
T |
|
| Q |
606 |
tattgcaatttgagttcttttttagttctagtttaactccaagtgatcggtgtagccaaccatatgtgtttgtttatgataatttgagtttctctttttt |
705 |
Q |
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|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
34354805 |
tattgcaatttgagttcttttttagttctagtttaactccaagtgatcggtgtagccaaccatatgtgtttgtttatgataatttgagtttctctttttt |
34354706 |
T |
|
| Q |
706 |
agttctagtttatgataattcgtcaaccttcatattttttaattagtctttactttttggtccatgagactaccttggatttatagtaagtaaaattagt |
805 |
Q |
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|||||||||||||||||||||||||||||||||||||||||||||||||| ||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
34354705 |
agttctagtttatgataattcgtcaaccttcatattttttaattagtcttcactttttggtccatgagactaccttggatttatagtaagtaaaattagt |
34354606 |
T |
|
| Q |
806 |
cttgagctactccaactctggcccaatcacaaggttttcattgttgttgaaattttgctcttccttccagcacatttcgctc |
887 |
Q |
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||||||||||||||||||||||||||||||||| ||||||||||| |||||||||||||||||| |||||||||||||||| |
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| T |
34354605 |
cttgagctactccaactctggcccaatcacaagtttttcattgttcttgaaattttgctcttcc-cccagcacatttcgctc |
34354525 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr7; HSP #2
Raw Score: 159; E-Value: 3e-84
Query Start/End: Original strand, 29 - 465
Target Start/End: Original strand, 35053691 - 35054144
Alignment:
| Q |
29 |
caaaatttattatgaagaactcaagagtacttagcgtcatgaccattcagagtcccaaatttactgatacaaacacaaagcatcgaatgttaatggaatt |
128 |
Q |
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|||||| |||||||||||| ||||||||||||||||||||||||||||||| ||||||||| || |||||||||||||||||||||||| |||||||||| |
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| T |
35053691 |
caaaatatattatgaagaattcaagagtacttagcgtcatgaccattcagattcccaaattcacagatacaaacacaaagcatcgaatggtaatggaatt |
35053790 |
T |
|
| Q |
129 |
atcttcgtgtcccaagagttcaacatgtaaact----tttatttgagtgacagcagataatatgtagggcatgtatgtaatagttcctaatctttagaga |
224 |
Q |
| |
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|||| |||| ||||||||||||||||||||||| |||||||||||||||| ||||||||| ||||||||| ||| ||||||||||||||||||||| |
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| T |
35053791 |
atctccgtgccccaagagttcaacatgtaaacttttatttatttgagtgacagaagataatatatagggcatg--tgtgatagttcctaatctttagaga |
35053888 |
T |
|
| Q |
225 |
acatgtacattgtactctataatcatattcgttttgtggttgaataatcttgtgagttatttacagcag-------caagtgtttcaattatcgtctcat |
317 |
Q |
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||||| |||||| ||||| |||| ||| || | || ||||| |||| ||||||||||| ||||| |||||||||||||||||||||||| |
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| T |
35053889 |
acatgcacattggactct------atatccgtctt-tagtagaatattcttatgagttatttatagcagttagcatcaagtgtttcaattatcgtctcat |
35053981 |
T |
|
| Q |
318 |
ttagctatcaatttgtgatt---------------------attgtcaaggttattttaataattctagcaaatgatttgatatgtttaaagtcggtgat |
396 |
Q |
| |
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|| ||||||||| |||||| |||||||||||||||||||||||| ||||||||||||||||||||||||||||||||| |
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| T |
35053982 |
ctaactatcaattcgtgatttcaattttcaaccacatgaagtttgtcaaggttattttaataattccagcaaatgatttgatatgtttaaagtcggtgat |
35054081 |
T |
|
| Q |
397 |
cgattaaannnnnnnnnaggggaggtaattaaaattattgaaatattgagaaaatatttacgtatatat |
465 |
Q |
| |
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|| |||||||||||||||||||||||||||||||| ||||||||||||||||||| |
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| T |
35054082 |
ttttt------ttttttaggggaggtaattaaaattattgaaatattgataaaatatttacgtatatat |
35054144 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3 (Bit Score: 47; Significance: 2e-17; HSPs: 2)
Name: chr3
Description:
Target: chr3; HSP #1
Raw Score: 47; E-Value: 2e-17
Query Start/End: Original strand, 19 - 89
Target Start/End: Complemental strand, 49973097 - 49973027
Alignment:
| Q |
19 |
cttcactttgcaaaatttattatgaagaactcaagagtacttagcgtcatgaccattcagagtcccaaatt |
89 |
Q |
| |
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|||||||||||||||| |||||||||||| |||||||||||||||| ||||| ||||||||| ||||||| |
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| T |
49973097 |
cttcactttgcaaaatatattatgaagaattcaagagtacttagcgccatgaaaattcagagtgccaaatt |
49973027 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3; HSP #2
Raw Score: 38; E-Value: 0.000000000005
Query Start/End: Original strand, 19 - 136
Target Start/End: Complemental strand, 49856642 - 49856525
Alignment:
| Q |
19 |
cttcactttgcaaaatttattatgaagaactcaagagtacttagcgtcatgaccattcagagtcccaaatttactgatacaaacacaaagcatcgaatgt |
118 |
Q |
| |
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||||| |||||||||| ||| ||| |||| ||||||||||| ||| |||||| ||||||||| |||||||| |||||||| |||||| | ||||| |
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| T |
49856642 |
cttcaatttgcaaaatatatcatgcagaattcaagagtactaagcatcatgaaaattcagagtgccaaatttctggatacaaatacaaagatccaaatgt |
49856543 |
T |
|
| Q |
119 |
taatggaattatcttcgt |
136 |
Q |
| |
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| ||||||||||||||| |
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| T |
49856542 |
cattggaattatcttcgt |
49856525 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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