View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
|
Alignment Overview
Query: NF4601-Insertion-2 (Length: 580)
Name: NF4601-Insertion-2
Description: NF4601
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF4601-Insertion-2 |
 | |
|
| [»] chr6 (1 HSPs) |
| |
|
Alignment Details
Target: chr6 (Bit Score: 526; Significance: 0; HSPs: 1)
Name: chr6
Description:
Target: chr6; HSP #1
Raw Score: 526; E-Value: 0
Query Start/End: Original strand, 8 - 580
Target Start/End: Original strand, 32815510 - 32816081
Alignment:
| Q |
8 |
atctagtgtggttaactaacttgtcataaaaatacgtggtttaagttgttattttgtggcacaattgatactatagattatgcctatgatgcattgatac |
107 |
Q |
| |
|
|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
32815510 |
atctagtgtggttaactaacttgtcataaaaatacgtggtttaagttgttattttgtggcacaattgatactatagattatgcctatgatgcattgatac |
32815609 |
T |
|
| Q |
108 |
tcatgtatttctctttgtacatggacacccnnnnnnnnnnaatgatggacaccgtttttcttaaaacttgacaattgaaacaaataaaagatacaagaac |
207 |
Q |
| |
|
|||||||||||||||||||||||||||||| ||||||||||||||||||||||||||||| |||||||||||||||||||||||||||||| |
|
|
| T |
32815610 |
tcatgtatttctctttgtacatggacacccttttttttt-aatgatggacaccgtttttcttaaaacttaacaattgaaacaaataaaagatacaagaac |
32815708 |
T |
|
| Q |
208 |
aacttagaattaaaagttaagataaaatactacaaaataattgtgtccatatatatagttaagagcattgcctaacacaaattaaaaaatgtgtcaagca |
307 |
Q |
| |
|
|||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
32815709 |
aacttaaaattaaaagttaagataaaatactacaaaataattgtgtccatatatatagttaagagcattgcctaacacaaattaaaaaatgtgtcaagca |
32815808 |
T |
|
| Q |
308 |
tgtgataaatttgtagctgtttttgcataaaggaaatcgtgacaaataaaagaattttatagataggtacttttcatctttgtacacttatatagttata |
407 |
Q |
| |
|
||||||||||||||||||||||||||||||||||| |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
32815809 |
tgtgataaatttgtagctgtttttgcataaaggaagtcgtgacaaataaaagaattttatagataggtacttttcatctttgtacacttatatagttata |
32815908 |
T |
|
| Q |
408 |
ttattacactaggagctttcccttgaacgagctagaagggagaatgttctatggaccacaccacttgcaactttggcatgttgaatcatttaccattctt |
507 |
Q |
| |
|
|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
32815909 |
ttattacactaggagctttcccttgaacgagctagaagggagaatgttctatggaccacaccacttgcaactttggcatgttgaatcatttaccattctt |
32816008 |
T |
|
| Q |
508 |
cattccacgtcttattggattccaaagcaaatatgtccactctacatttccactttggggtaacctctcttta |
580 |
Q |
| |
|
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
32816009 |
cattccacgtcttattggattccaaagcaaatatgtccactctacatttccactttggggtaacctctcttta |
32816081 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
© Oklahoma State University