View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF4601-Insertion-3 (Length: 332)
Name: NF4601-Insertion-3
Description: NF4601
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF4601-Insertion-3 |
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Alignment Details
Target: chr5 (Bit Score: 171; Significance: 8e-92; HSPs: 2)
Name: chr5
Description:
Target: chr5; HSP #1
Raw Score: 171; E-Value: 8e-92
Query Start/End: Original strand, 93 - 327
Target Start/End: Complemental strand, 3532424 - 3532196
Alignment:
| Q |
93 |
tattcattcattttgattgtcaacgtaattttgaaattattatggaacaattaaaggatagtggtatatattgtcacaattgcatcccttaaactctcta |
192 |
Q |
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| T |
3532424 |
tattcattcattttgattgtcaacgtaattttgaaattattatggaacaattataggatagtggtat----tgtcacaattgcatcccttaaactctcta |
3532329 |
T |
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| Q |
193 |
aagcaactcaaaaagactctctttgaagagtaattaagatttgacagatatggatcaaataaagacaaagtaagaatataatttttacgnnnnnnnngta |
292 |
Q |
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|||||||||||||||||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| | | ||| |
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| T |
3532328 |
aagcaactcaaaaagactct--ttgaagagtaattaagatttgacagatatggatcaaataaagacaaagtaagaatataattttgatgaaaaaaaagta |
3532231 |
T |
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| Q |
293 |
gagaatctccccaaaaatagctcctgcatcaatca |
327 |
Q |
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| T |
3532230 |
gagaatctccccaaaaatagctcctgcatcaatca |
3532196 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr5; HSP #2
Raw Score: 73; E-Value: 3e-33
Query Start/End: Original strand, 8 - 88
Target Start/End: Complemental strand, 3532578 - 3532498
Alignment:
| Q |
8 |
ctttaatggcagactaaaaaggagataacaaatatatctacaaaaactacattcatatgtgtttaatacccatcttaaaaa |
88 |
Q |
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|||||||||||||||||||||||||||||||||||||||||||||||||| ||||||||||||||||||||||||||||| |
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| T |
3532578 |
ctttaatggcagactaaaaaggagataacaaatatatctacaaaaactactatcatatgtgtttaatacccatcttaaaaa |
3532498 |
T |
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