View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF4601-Insertion-4 (Length: 305)
Name: NF4601-Insertion-4
Description: NF4601
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF4601-Insertion-4 |
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| [»] chr2 (1 HSPs) |
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Alignment Details
Target: chr2 (Bit Score: 286; Significance: 1e-160; HSPs: 1)
Name: chr2
Description:
Target: chr2; HSP #1
Raw Score: 286; E-Value: 1e-160
Query Start/End: Original strand, 8 - 305
Target Start/End: Complemental strand, 39626830 - 39626533
Alignment:
| Q |
8 |
ggttgatttaataaaacttaacactcataaaaagttattgaagtgtttactcatgtatgcaaaaagaacatctaaaacccataattgtcacatttaacat |
107 |
Q |
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||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |||||||||||||||| |
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| T |
39626830 |
ggttgatttaataaaacttaacactcataaaaagttattgaagtgtttactcatgtatgcaaaaagaacatctaaaacccatagttgtcacatttaacat |
39626731 |
T |
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| Q |
108 |
agtcaaccagaataagtactttttctccgtgaattcatgcttagaatctatacagaacaactagttgtgaatgtccacccattacatacgctacggcttt |
207 |
Q |
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| T |
39626730 |
agtcaaccagaataagtactttttctccgtgaattcatgcttataatctatacagaacaactagttgtgaatgtccacccattacatacgctacggcttt |
39626631 |
T |
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| Q |
208 |
tatctttccaaataatttttgtactcacttaaatgctcctaaaagcaaaaaagctcagcgacaaaccttggcagtgtatagtgcttatttctggccct |
305 |
Q |
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|||||||||||||||||||||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
39626630 |
tatctttccaaataatttttgtacccacttaaatgctcctaaaagcaaaaaagctcagcgacaaaccttggcagtgtatagtgcttatttctggccct |
39626533 |
T |
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