View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF4601-Insertion-5 (Length: 265)
Name: NF4601-Insertion-5
Description: NF4601
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF4601-Insertion-5 |
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| [»] chr6 (1 HSPs) |
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Alignment Details
Target: chr6 (Bit Score: 230; Significance: 1e-127; HSPs: 1)
Name: chr6
Description:
Target: chr6; HSP #1
Raw Score: 230; E-Value: 1e-127
Query Start/End: Original strand, 8 - 265
Target Start/End: Complemental strand, 32570874 - 32570617
Alignment:
| Q |
8 |
gaacttcttcttggagttctacacctcttcccattgccatgtgaaaaccatcaacaacagcctaatggattcaatccaattactcatatgtgaattttta |
107 |
Q |
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| T |
32570874 |
gaacttcttcttggagttctacacctcctcccattgccatgtgaaaaccatcaacatcagcctaatggattcaatccaattacacatatgtgaattttta |
32570775 |
T |
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| Q |
108 |
gtgaatcataagtaattagttcctaagctttcacataataatgagaatttgaatgatatatatcatcaatgtaaattaattttatattgaatctaataaa |
207 |
Q |
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| T |
32570774 |
gtgaatcataagtaattagtttctaagctttcacataataatgagaatttgaatgatatatatcatcaatgtgaattaattttatattgaatctaataaa |
32570675 |
T |
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| Q |
208 |
aacaatcatttaatgatggtgtaaaaagatttacattagtaatacatgtccatgaaag |
265 |
Q |
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| T |
32570674 |
aacaatcatttaatgatggtgtaaaaagatttacactagcaatacatgtccatgaaag |
32570617 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr1 (Bit Score: 41; Significance: 0.00000000000002; HSPs: 1)
Name: chr1
Description:
Target: chr1; HSP #1
Raw Score: 41; E-Value: 0.00000000000002
Query Start/End: Original strand, 103 - 207
Target Start/End: Complemental strand, 35033421 - 35033318
Alignment:
| Q |
103 |
ttttagtgaatcataagtaattagttcctaagctttcacataataatgagaatttgaatgatatatatcatcaatgtaaattaattttatattgaatcta |
202 |
Q |
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|||| ||||||||||| |||||| ||| ||||||| || ||||||| ||||||| ||| |||| |||| | ||| ||||||||||||| |||||||||| |
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| T |
35033421 |
tttttgtgaatcataattaattatttcataagcttgcatgtaataattagaatttaaattatatgtatcgt-aatttaaattaattttacattgaatcta |
35033323 |
T |
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| Q |
203 |
ataaa |
207 |
Q |
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| T |
35033322 |
ataaa |
35033318 |
T |
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