View Alignment

This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.

Legend
 Query
 Query hiting target  Query hiting target's complemental strand
 Query's complemental strand hiting target  Query's complemental strand hiting target's complemental strand

Alignment Overview

Query: NF4601_high_1 (Length: 589)

Name: NF4601_high_1
Description: NF4601
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)


[»] NF4601_high_1
NF4601_high_1
[»] chr3 (41 HSPs)
chr3 (27-582)||(26856784-26857337)
chr3 (27-237)||(53785586-53785794)
chr3 (27-237)||(32546672-32546880)
chr3 (27-222)||(39583251-39583444)
chr3 (27-222)||(37133021-37133214)
chr3 (27-237)||(44198644-44198852)
chr3 (27-233)||(26772639-26772843)
chr3 (27-237)||(52741534-52741742)
chr3 (30-206)||(3443337-3443511)
chr3 (36-200)||(25324943-25325107)
chr3 (90-237)||(44710-44860)
chr3 (27-237)||(13582387-13582594)
chr3 (27-203)||(52411913-52412087)
chr3 (27-201)||(38145969-38146141)
chr3 (27-222)||(38670902-38671095)
chr3 (46-208)||(5338552-5338711)
chr3 (102-237)||(4763888-4764022)
chr3 (30-200)||(7900772-7900940)
chr3 (44-203)||(38978836-38978995)
chr3 (85-201)||(37992246-37992361)
chr3 (46-153)||(51234577-51234684)
chr3 (50-230)||(7502055-7502233)
chr3 (44-200)||(4472976-4473131)
chr3 (65-237)||(21552541-21552717)
chr3 (27-237)||(49017844-49018048)
chr3 (28-197)||(54508407-54508574)
chr3 (28-223)||(46940793-46940989)
chr3 (116-237)||(3643030-3643149)
chr3 (132-234)||(4669788-4669890)
chr3 (110-234)||(8592021-8592144)
chr3 (100-203)||(25094665-25094768)
chr3 (107-206)||(32690966-32691065)
chr3 (100-203)||(42205978-42206081)
chr3 (106-203)||(7257655-7257752)
chr3 (100-169)||(25190027-25190096)
chr3 (159-235)||(26276494-26276570)
chr3 (122-153)||(4190826-4190857)
chr3 (122-153)||(4190998-4191029)
chr3 (111-202)||(26393790-26393881)
chr3 (67-149)||(43123110-43123192)
chr3 (96-140)||(4669086-4669130)
[»] chr8 (37 HSPs)
chr8 (27-237)||(38815171-38815379)
chr8 (65-234)||(22589395-22589563)
chr8 (27-237)||(3187847-3188054)
chr8 (31-237)||(24124905-24125109)
chr8 (79-237)||(18804490-18804647)
chr8 (27-218)||(6592472-6592660)
chr8 (62-234)||(37514101-37514273)
chr8 (27-224)||(39434557-39434752)
chr8 (29-169)||(35740010-35740148)
chr8 (89-167)||(3821171-3821249)
chr8 (27-221)||(6618178-6618369)
chr8 (27-237)||(25021836-25022044)
chr8 (85-223)||(4699762-4699899)
chr8 (58-223)||(8540428-8540596)
chr8 (89-235)||(4073413-4073559)
chr8 (50-223)||(28196084-28196256)
chr8 (80-145)||(40223476-40223541)
chr8 (89-169)||(3863262-3863342)
chr8 (92-200)||(9259377-9259485)
chr8 (50-237)||(43823866-43824053)
chr8 (27-143)||(500199-500312)
chr8 (92-147)||(8115779-8115834)
chr8 (92-206)||(5329687-5329801)
chr8 (85-167)||(39671250-39671332)
chr8 (89-226)||(3825524-3825660)
chr8 (130-201)||(4066758-4066829)
chr8 (129-199)||(24451036-24451105)
chr8 (111-202)||(42659139-42659230)
chr8 (159-237)||(500119-500197)
chr8 (106-156)||(12598162-12598212)
chr8 (179-237)||(18596771-18596829)
chr8 (138-223)||(8882235-8882320)
chr8 (27-123)||(8882319-8882412)
chr8 (181-233)||(44337221-44337272)
chr8 (96-147)||(10950739-10950790)
chr8 (96-147)||(10958744-10958795)
chr8 (62-148)||(121776-121862)
[»] chr7 (41 HSPs)
chr7 (27-237)||(19277168-19277378)
chr7 (27-237)||(21326860-21327068)
chr7 (27-221)||(24527482-24527674)
chr7 (27-237)||(982826-983034)
chr7 (27-237)||(45613864-45614072)
chr7 (27-234)||(4501139-4501343)
chr7 (32-201)||(48539094-48539261)
chr7 (92-237)||(25187016-25187161)
chr7 (22-221)||(5825166-5825363)
chr7 (27-237)||(32584477-32584686)
chr7 (50-237)||(22197864-22198050)
chr7 (50-237)||(22239771-22239957)
chr7 (27-200)||(27521385-27521556)
chr7 (27-233)||(40726502-40726706)
chr7 (34-223)||(28517316-28517503)
chr7 (27-170)||(30216080-30216221)
chr7 (27-221)||(10905011-10905202)
chr7 (52-206)||(5972261-5972415)
chr7 (27-200)||(43856788-43856959)
chr7 (70-223)||(41117833-41117987)
chr7 (44-200)||(34772696-34772851)
chr7 (64-202)||(23037457-23037594)
chr7 (30-201)||(42295209-42295378)
chr7 (118-223)||(43333941-43334046)
chr7 (120-233)||(45003010-45003123)
chr7 (66-170)||(23792956-23793060)
chr7 (35-154)||(6634993-6635110)
chr7 (85-131)||(9281209-9281255)
chr7 (85-131)||(9292180-9292226)
chr7 (135-237)||(27027758-27027860)
chr7 (27-135)||(10032193-10032299)
chr7 (147-234)||(29054729-29054816)
chr7 (180-233)||(38766205-38766258)
chr7 (85-135)||(23890257-23890307)
chr7 (191-233)||(38832183-38832225)
chr7 (141-202)||(2904292-2904353)
chr7 (127-200)||(38839240-38839313)
chr7 (98-170)||(44525929-44526001)
chr7 (85-131)||(2904348-2904394)
chr7 (206-234)||(21454650-21454678)
chr7 (85-201)||(36558946-36559061)
[»] scaffold0009 (1 HSPs)
scaffold0009 (31-237)||(102983-103187)
[»] chr2 (36 HSPs)
chr2 (27-237)||(4413088-4413296)
chr2 (46-237)||(17344515-17344706)
chr2 (27-237)||(18744976-18745184)
chr2 (28-237)||(41867931-41868137)
chr2 (27-234)||(9685437-9685642)
chr2 (30-230)||(28224884-28225082)
chr2 (65-237)||(13413228-13413400)
chr2 (27-237)||(19161805-19162013)
chr2 (88-223)||(7760926-7761061)
chr2 (27-221)||(5532314-5532504)
chr2 (65-207)||(27502269-27502411)
chr2 (27-156)||(34814841-34814967)
chr2 (91-200)||(16351928-16352037)
chr2 (33-156)||(20142753-20142874)
chr2 (63-170)||(44686360-44686467)
chr2 (69-155)||(3825685-3825771)
chr2 (121-233)||(27494192-27494304)
chr2 (22-149)||(32029103-32029228)
chr2 (27-214)||(13147119-13147307)
chr2 (179-237)||(3208416-3208474)
chr2 (81-156)||(8036556-8036633)
chr2 (179-237)||(30602366-30602424)
chr2 (179-237)||(41702149-41702207)
chr2 (105-202)||(1296175-1296272)
chr2 (27-150)||(2886637-2886758)
chr2 (85-161)||(9200205-9200281)
chr2 (27-221)||(11921232-11921418)
chr2 (182-237)||(42122694-42122749)
chr2 (104-170)||(44684955-44685021)
chr2 (28-200)||(23484961-23485129)
chr2 (146-238)||(15515286-15515378)
chr2 (88-175)||(33612628-33612713)
chr2 (50-200)||(29807989-29808139)
chr2 (181-222)||(20143119-20143160)
chr2 (27-150)||(2888480-2888601)
chr2 (88-140)||(44720296-44720348)
[»] chr1 (38 HSPs)
chr1 (27-237)||(22346772-22346980)
chr1 (27-237)||(21472880-21473088)
chr1 (27-237)||(28041149-28041357)
chr1 (46-229)||(34644451-34644634)
chr1 (34-237)||(24177540-24177741)
chr1 (27-223)||(20259819-20260013)
chr1 (27-221)||(2764372-2764564)
chr1 (27-221)||(2898595-2898786)
chr1 (27-154)||(29169815-29169940)
chr1 (27-223)||(45659670-45659862)
chr1 (30-223)||(4862014-4862206)
chr1 (30-222)||(31737348-31737537)
chr1 (27-170)||(38731553-38731694)
chr1 (117-237)||(868513-868631)
chr1 (65-237)||(7213120-7213299)
chr1 (137-237)||(30688434-30688534)
chr1 (27-142)||(42919832-42919945)
chr1 (50-222)||(47459575-47459746)
chr1 (98-153)||(35387747-35387802)
chr1 (28-154)||(50314647-50314771)
chr1 (159-233)||(5453976-5454050)
chr1 (162-237)||(1114023-1114098)
chr1 (37-140)||(18616184-18616286)
chr1 (190-235)||(44420591-44420636)
chr1 (94-222)||(36486770-36486897)
chr1 (85-141)||(50161498-50161554)
chr1 (159-230)||(7483769-7483839)
chr1 (99-222)||(48841174-48841297)
chr1 (110-200)||(6670208-6670298)
chr1 (179-237)||(19035356-19035414)
chr1 (114-199)||(11128361-11128446)
chr1 (142-234)||(4611069-4611161)
chr1 (179-223)||(21934268-21934312)
chr1 (27-96)||(19035465-19035532)
chr1 (97-138)||(3401886-3401927)
chr1 (97-138)||(3444892-3444933)
chr1 (165-237)||(16323961-16324036)
chr1 (140-201)||(45835319-45835380)
[»] chr6 (23 HSPs)
chr6 (27-233)||(17249327-17249531)
chr6 (33-233)||(33220739-33220937)
chr6 (27-237)||(28625808-28626016)
chr6 (27-199)||(4206618-4206788)
chr6 (27-199)||(4165944-4166114)
chr6 (27-237)||(959458-959665)
chr6 (27-223)||(29338101-29338295)
chr6 (27-211)||(34304399-34304581)
chr6 (27-149)||(45699-45819)
chr6 (122-235)||(3137362-3137475)
chr6 (98-210)||(32115622-32115734)
chr6 (50-229)||(34554320-34554498)
chr6 (137-237)||(34168798-34168897)
chr6 (27-146)||(34415404-34415521)
chr6 (27-222)||(357739-357931)
chr6 (50-206)||(3714825-3714981)
chr6 (28-237)||(28009010-28009217)
chr6 (159-233)||(7749362-7749436)
chr6 (28-153)||(24016298-24016421)
chr6 (99-183)||(31703561-31703645)
chr6 (91-201)||(13398266-13398376)
chr6 (85-210)||(26225657-26225782)
chr6 (99-169)||(7200627-7200697)
[»] chr4 (52 HSPs)
chr4 (31-233)||(3329877-3330077)
chr4 (67-233)||(4419145-4419310)
chr4 (27-223)||(53619477-53619671)
chr4 (27-237)||(30940761-30940962)
chr4 (46-237)||(600731-600922)
chr4 (27-237)||(26521366-26521573)
chr4 (28-233)||(55933485-55933686)
chr4 (50-223)||(34107739-34107912)
chr4 (27-233)||(50000947-50001152)
chr4 (98-237)||(50464387-50464526)
chr4 (27-230)||(7536593-7536794)
chr4 (99-233)||(39001278-39001412)
chr4 (27-188)||(56462128-56462287)
chr4 (85-238)||(16955336-16955489)
chr4 (27-154)||(6865842-6865967)
chr4 (62-217)||(53170409-53170565)
chr4 (34-234)||(50462975-50463170)
chr4 (46-207)||(38535608-38535768)
chr4 (27-237)||(132262-132470)
chr4 (99-222)||(23255605-23255728)
chr4 (30-131)||(50483221-50483320)
chr4 (106-238)||(45661567-45661699)
chr4 (50-201)||(48656953-48657109)
chr4 (92-237)||(42455692-42455837)
chr4 (137-235)||(50442609-50442707)
chr4 (50-163)||(46440932-46441045)
chr4 (62-202)||(25504207-25504347)
chr4 (62-146)||(54190906-54190990)
chr4 (103-234)||(23233211-23233340)
chr4 (146-233)||(31846984-31847071)
chr4 (179-237)||(40392726-40392784)
chr4 (119-187)||(18981651-18981718)
chr4 (66-170)||(28739849-28739953)
chr4 (91-136)||(747853-747898)
chr4 (116-221)||(8738098-8738203)
chr4 (92-188)||(52403869-52403963)
chr4 (27-118)||(12918394-12918483)
chr4 (80-132)||(53098403-53098455)
chr4 (153-232)||(1041307-1041386)
chr4 (115-234)||(23242780-23242899)
chr4 (97-200)||(34213534-34213636)
chr4 (92-170)||(32312796-32312874)
chr4 (92-169)||(46391399-46391474)
chr4 (91-136)||(712677-712722)
chr4 (96-237)||(9601087-9601223)
chr4 (180-237)||(12053344-12053401)
chr4 (132-237)||(16009244-16009347)
chr4 (89-142)||(43849430-43849483)
chr4 (179-223)||(2852326-2852370)
chr4 (85-125)||(23605060-23605100)
chr4 (66-154)||(49344198-49344286)
chr4 (101-153)||(49354160-49354212)
[»] chr5 (36 HSPs)
chr5 (27-237)||(32269819-32270026)
chr5 (27-237)||(42921575-42921782)
chr5 (27-221)||(37873660-37873852)
chr5 (27-233)||(13166932-13167136)
chr5 (28-233)||(35310329-35310532)
chr5 (27-233)||(25663054-25663258)
chr5 (28-220)||(430496-430686)
chr5 (27-233)||(33692077-33692278)
chr5 (65-200)||(22188713-22188848)
chr5 (106-234)||(2566194-2566322)
chr5 (46-222)||(8100446-8100620)
chr5 (27-186)||(38875567-38875723)
chr5 (27-237)||(15292048-15292255)
chr5 (113-235)||(15506721-15506843)
chr5 (62-237)||(23423926-23424101)
chr5 (27-237)||(34335214-34335422)
chr5 (118-214)||(23023495-23023591)
chr5 (27-215)||(27336594-27336778)
chr5 (30-169)||(26212608-26212745)
chr5 (27-156)||(14423643-14423763)
chr5 (179-235)||(11005757-11005813)
chr5 (94-201)||(19260217-19260324)
chr5 (27-133)||(43115479-43115583)
chr5 (66-166)||(15833010-15833107)
chr5 (27-124)||(43129524-43129619)
chr5 (85-149)||(41343516-41343581)
chr5 (30-145)||(14723269-14723382)
chr5 (85-129)||(27294423-27294467)
chr5 (114-161)||(16017126-16017173)
chr5 (182-237)||(27913507-27913561)
chr5 (80-155)||(15810008-15810081)
chr5 (85-149)||(7716146-7716210)
chr5 (88-127)||(16598893-16598932)
chr5 (185-233)||(2917539-2917587)
chr5 (114-170)||(3114247-3114303)
chr5 (130-238)||(7143585-7143693)
[»] scaffold0490 (1 HSPs)
scaffold0490 (27-169)||(6279-6419)
[»] scaffold0148 (1 HSPs)
scaffold0148 (27-237)||(33127-33335)
[»] scaffold1768 (1 HSPs)
scaffold1768 (46-237)||(223-414)
[»] scaffold0470 (1 HSPs)
scaffold0470 (27-221)||(7496-7687)
[»] scaffold0031 (1 HSPs)
scaffold0031 (27-237)||(49292-49496)
[»] scaffold0186 (1 HSPs)
scaffold0186 (22-146)||(10329-10454)
[»] scaffold0224 (1 HSPs)
scaffold0224 (27-142)||(18386-18499)
[»] scaffold0406 (1 HSPs)
scaffold0406 (180-237)||(6765-6822)
[»] scaffold0119 (1 HSPs)
scaffold0119 (80-152)||(16068-16139)
[»] scaffold0309 (1 HSPs)
scaffold0309 (190-237)||(5201-5248)
[»] scaffold0493 (1 HSPs)
scaffold0493 (28-135)||(8539-8644)


Alignment Details
Target: chr3 (Bit Score: 497; Significance: 0; HSPs: 41)
Name: chr3
Description:

Target: chr3; HSP #1
Raw Score: 497; E-Value: 0
Query Start/End: Original strand, 27 - 582
Target Start/End: Original strand, 26856784 - 26857337
Alignment:
Q  27 gtgttctgacaatcaacatatgcttttataacatctgcttttgacactttcaatttcgtagcaccagaggttgttgaccttctacatagagttcaaaggg 126  Q
    ||||| |||||||||||||  ||||||||| |||||||||||||| ||||| ||||| |||||| ||||  |||||||||||||||||||||||||||||    
T  26856784 gtgttgtgacaatcaacat--gcttttataccatctgcttttgacgctttcgatttcctagcactagagactgttgaccttctacatagagttcaaaggg 26856881  T
Q  127 tcatgcatagcaatgtcatgtctcctaggtttatgaatgttgtgcttgcgatgattggttttaccatccaaaaaggcctagcggcgcagcttgttgctcg 226  Q
    ||||||||||||||||||||||||||||||||||||||||||||||||||| ||||||||||||||||||||||||||||||||||||||||||||||||    
T  26856882 tcatgcatagcaatgtcatgtctcctaggtttatgaatgttgtgcttgcgaggattggttttaccatccaaaaaggcctagcggcgcagcttgttgctcg 26856981  T
Q  227 cttgccttctacatattataattaccttttgtacacaaaagctaataaaataaaagtactaatccaatcattgtggtttgtgtgcatgcttatacagatc 326  Q
    ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  26856982 cttgccttctacatattataattaccttttgtacacaaaagctaataaaataaaagtactaatccaatcattgtggtttgtgtgcatgcttatacagatc 26857081  T
Q  327 atgaacgtggcgggcttcacattattgctgataatgacagtaacaacaacagcaatattcactcctctaatctccatattatatgatccaacaaggccat 426  Q
    |||||||||||||||||||||||||||||||||||||||||||||| |||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  26857082 atgaacgtggcgggcttcacattattgctgataatgacagtaacaataacagcaatattcactcctctaatctccatattatatgatccaacaaggccat 26857181  T
Q  427 acatgttgaaccaaagaagggacattcaacacaatccaccagaggtagaacttcgaatagttttatgcattcttgacgccgaaaacacaaatggactcgt 526  Q
    |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |    
T  26857182 acatgttgaaccaaagaagggacattcaacacaatccaccagaggtagaacttcgaatagttttatgcattcttgacgccgaaaacacaaatggactcat 26857281  T
Q  527 ccatctacttgatgtcacaaatccaacctcagaatatccaatttcagtttcttctc 582  Q
    ||| ||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  26857282 ccacctacttgatgtcacaaatccaacctcagaatatccaatttcagtttcttctc 26857337  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #2
Raw Score: 128; E-Value: 7e-66
Query Start/End: Original strand, 27 - 237
Target Start/End: Complemental strand, 53785794 - 53785586
Alignment:
Q  27 gtgttctgacaatcaacatatgcttttataacatctgcttttgacactttcaatttcgtagcaccagaggttgttgaccttctacatagagttcaaaggg 126  Q
    |||||||||||||||||||  ||||||||| ||| ||||||||||||||||  |||| ||||||||||||||||||||||||||||||||||||||| ||    
T  53785794 gtgttctgacaatcaacat--gcttttataccatttgcttttgacactttcggtttcctagcaccagaggttgttgaccttctacatagagttcaaaagg 53785697  T
Q  127 tcatgcatagcaatgtcatgtctcctaggtttatgaatgttgtgcttgcgatgattggttttaccatccaaaaaggcctagcggcgcagcttgttgctcg 226  Q
    ||||||||||||||||||||||||||||||  ||||||||| || || ||| |||||||||| |||||||| |||| | ||||||| |||||||||| ||    
T  53785696 tcatgcatagcaatgtcatgtctcctaggtccatgaatgttatgtttacgaggattggttttgccatccaacaaggtccagcggcgtagcttgttgcccg 53785597  T
Q  227 cttgccttcta 237  Q
    |||||||||||    
T  53785596 cttgccttcta 53785586  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #3
Raw Score: 124; E-Value: 2e-63
Query Start/End: Original strand, 27 - 237
Target Start/End: Complemental strand, 32546880 - 32546672
Alignment:
Q  27 gtgttctgacaatcaacatatgcttttataacatctgcttttgacactttcaatttcgtagcaccagaggttgttgaccttctacatagagttcaaaggg 126  Q
    |||||| |||||||||||||  |||||||| ||| ||||||||||||||||| |||| |||||||| ||| ||||||||||||||||||||||||||  |    
T  32546880 gtgttcggacaatcaacata--cttttataccatttgcttttgacactttcagtttcctagcaccaaaggctgttgaccttctacatagagttcaaaaag 32546783  T
Q  127 tcatgcatagcaatgtcatgtctcctaggtttatgaatgttgtgcttgcgatgattggttttaccatccaaaaaggcctagcggcgcagcttgttgctcg 226  Q
    |||||||||| |||||||||||||||||||  |||||||||||| |  ||| |||||||||| ||||||||||||| |||||||||||||||||||| ||    
T  32546782 tcatgcatagtaatgtcatgtctcctaggtccatgaatgttgtgttcacgaggattggttttgccatccaaaaaggtctagcggcgcagcttgttgcccg 32546683  T
Q  227 cttgccttcta 237  Q
    |||||||||||    
T  32546682 cttgccttcta 32546672  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #4
Raw Score: 109; E-Value: 2e-54
Query Start/End: Original strand, 27 - 222
Target Start/End: Original strand, 39583251 - 39583444
Alignment:
Q  27 gtgttctgacaatcaacatatgcttttataacatctgcttttgacactttcaatttcgtagcaccagaggttgttgaccttctacatagagttcaaaggg 126  Q
    |||||||||||||||||||  ||||||||| ||| || ||| |||||||||  |||| ||||| || |||||||||||||||| ||||||||||||||||    
T  39583251 gtgttctgacaatcaacat--gcttttatatcatttgttttcgacactttcggtttcctagcatcataggttgttgaccttctgcatagagttcaaaggg 39583348  T
Q  127 tcatgcatagcaatgtcatgtctcctaggtttatgaatgttgtgcttgcgatgattggttttaccatccaaaaaggcctagcggcgcagcttgttg 222  Q
    ||||||||||||||||||||||||||||||| |||||||| ||| || ||| ||||| |||| ||||||||||||| ||||||||||| |||||||    
T  39583349 tcatgcatagcaatgtcatgtctcctaggttcatgaatgtcgtgtttacgaggattgattttgccatccaaaaaggtctagcggcgcaacttgttg 39583444  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #5
Raw Score: 101; E-Value: 9e-50
Query Start/End: Original strand, 27 - 222
Target Start/End: Original strand, 37133021 - 37133214
Alignment:
Q  27 gtgttctgacaatcaacatatgcttttataacatctgcttttgacactttcaatttcgtagcaccagaggttgttgaccttctacatagagttcaaaggg 126  Q
    ||||||||||||||||||| |  ||||||| ||| || |||| ||||||||  |||| |||||||||||||||||||||||||||||||||||| || ||    
T  37133021 gtgttctgacaatcaacatgt--ttttataccatttgttttttacactttcggtttcttagcaccagaggttgttgaccttctacatagagttctaaagg 37133118  T
Q  127 tcatgcatagcaatgtcatgtctcctaggtttatgaatgttgtgcttgcgatgattggttttaccatccaaaaaggcctagcggcgcagcttgttg 222  Q
    ||||||||||||||||||||||||||| ||| |||||||||||| ||   | |||||||||| | ||||||||||| |||||||||||| ||||||    
T  37133119 tcatgcatagcaatgtcatgtctcctaagttaatgaatgttgtgtttataaggattggttttgcgatccaaaaaggtctagcggcgcagtttgttg 37133214  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #6
Raw Score: 100; E-Value: 4e-49
Query Start/End: Original strand, 27 - 237
Target Start/End: Complemental strand, 44198852 - 44198644
Alignment:
Q  27 gtgttctgacaatcaacatatgcttttataacatctgcttttgacactttcaatttcgtagcaccagaggttgttgaccttctacatagagttcaaaggg 126  Q
    ||||||||| |||||||||  ||||||||| ||| ||||||||||||||||  |||| || |||| |||| |||||||||||||||||||||||| | ||    
T  44198852 gtgttctgagaatcaacat--gcttttataccatttgcttttgacactttcggtttcttaacacccgaggctgttgaccttctacatagagttcagaagg 44198755  T
Q  127 tcatgcatagcaatgtcatgtctcctaggtttatgaatgttgtgcttgcgatgattggttttaccatccaaaaaggcctagcggcgcagcttgttgctcg 226  Q
    | ||||||||||||||||||||||||||||  |||||||||||| ||||||| |||| |||| |||||||||||||   |||| | ||||||||||  ||    
T  44198754 ttatgcatagcaatgtcatgtctcctaggtccatgaatgttgtgtttgcgataattgattttgccatccaaaaaggttgagcgacacagcttgttgtccg 44198655  T
Q  227 cttgccttcta 237  Q
    |||||||||||    
T  44198654 cttgccttcta 44198644  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #7
Raw Score: 96; E-Value: 9e-47
Query Start/End: Original strand, 27 - 233
Target Start/End: Complemental strand, 26772843 - 26772639
Alignment:
Q  27 gtgttctgacaatcaacatatgcttttataacatctgcttttgacactttcaatttcgtagcaccagaggttgttgaccttctacatagagttcaaaggg 126  Q
    |||||||||||||||||||  ||||||||| ||| |||||||||||||||    ||| ||||| ||||||  |||||||||||| ||||||| ||||||     
T  26772843 gtgttctgacaatcaacat--gcttttataccatttgcttttgacacttttggcttcctagcatcagaggcagttgaccttctatatagagtacaaagga 26772746  T
Q  127 tcatgcatagcaatgtcatgtctcctaggtttatgaatgttgtgcttgcgatgattggttttaccatccaaaaaggcctagcggcgcagcttgttgctcg 226  Q
    | ||||||| |||||| |||||||||||||  |||||||||||| || ||| ||||| |||| ||||||||||||| |||||||||||||||||||| ||    
T  26772745 ttatgcataacaatgttatgtctcctaggtccatgaatgttgtgtttacgaggattgattttgccatccaaaaaggtctagcggcgcagcttgttgcccg 26772646  T
Q  227 cttgcct 233  Q
    |||||||    
T  26772645 cttgcct 26772639  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #8
Raw Score: 96; E-Value: 9e-47
Query Start/End: Original strand, 27 - 237
Target Start/End: Original strand, 52741534 - 52741742
Alignment:
Q  27 gtgttctgacaatcaacatatgcttttataacatctgcttttgacactttcaatttcgtagcaccagaggttgttgaccttctacatagagttcaaaggg 126  Q
    |||||||||||||||||||  ||||||||| ||| |||||||||||||||   |||| ||||||||||||||||||||||||||||||||||||||| ||    
T  52741534 gtgttctgacaatcaacat--gcttttataccatttgcttttgacacttttggtttcctagcaccagaggttgttgaccttctacatagagttcaaaagg 52741631  T
Q  127 tcatgcatagcaatgtcatgtctcctaggtttatgaatgttgtgcttgcgatgattggttttaccatccaaaaaggcctagcggcgcagcttgttgctcg 226  Q
    |||||||||||||||||||||||||||| |  ||  || ||||  |  ||| |||| ||||| ||||||||||||| |||||| |||| ||| |||| ||    
T  52741632 tcatgcatagcaatgtcatgtctcctagatccatttatcttgtattcacgaagatttgttttgccatccaaaaaggtctagcgacgcaacttattgcccg 52741731  T
Q  227 cttgccttcta 237  Q
    || ||||||||    
T  52741732 ctcgccttcta 52741742  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #9
Raw Score: 90; E-Value: 3e-43
Query Start/End: Original strand, 30 - 206
Target Start/End: Original strand, 3443337 - 3443511
Alignment:
Q  30 ttctgacaatcaacatatgcttttataacatctgcttttgacactttcaatttcgtagcaccagaggttgttgaccttctacatagagttcaaagggtca 129  Q
    |||| |||||||||||  ||||||||| ||| | || |||||||||||| |||| |||||| ||||||||||||||||||||||||||||||||||||||    
T  3443337 ttctaacaatcaacat--gcttttataccattttctgttgacactttcagtttcctagcactagaggttgttgaccttctacatagagttcaaagggtca 3443434  T
Q  130 tgcatagcaatgtcatgtctcctaggtttatgaatgttgtgcttgcgatgattggttttaccatccaaaaaggccta 206  Q
    ||| ||| |||||| |||||||||  | ||||||||||||| || |||||||||||||| ||||||| |||| ||||    
T  3443435 tgcgtaggaatgtcttgtctcctaaatctatgaatgttgtgtttacgatgattggttttgccatccacaaagaccta 3443511  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #10
Raw Score: 81; E-Value: 8e-38
Query Start/End: Original strand, 36 - 200
Target Start/End: Complemental strand, 25325107 - 25324943
Alignment:
Q  36 caatcaacatatgcttttataacatctgcttttgacactttcaatttcgtagcaccagaggttgttgaccttctacatagagttcaaagggtcatgcata 135  Q
    ||||||||||||| ||||||| ||| ||||||  |||||||| ||||| |||||||| || ||||||||||||||||||||||||||| | |||||||||    
T  25325107 caatcaacatatgtttttataccatttgctttcaacactttcgatttcctagcaccatagattgttgaccttctacatagagttcaaatgatcatgcata 25325008  T
Q  136 gcaatgtcatgtctcctaggtttatgaatgttgtgcttgcgatgattggttttaccatccaaaaa 200  Q
    ||||||||| || |||||  |  |||||| |||||||| ||||||||| |||| |||||||||||    
T  25325007 gcaatgtcaagtttcctaaatccatgaatattgtgcttacgatgattgcttttgccatccaaaaa 25324943  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #11
Raw Score: 77; E-Value: 2e-35
Query Start/End: Original strand, 90 - 237
Target Start/End: Complemental strand, 44860 - 44710
Alignment:
Q  90 ccagaggttgttgaccttctacatagagttcaaagggtcatgcatagcaatgtcatgtctcctaggtttatgaatg---ttgtgcttgcgatgattggtt 186  Q
    ||||||| |||||||||||||||||||||||||| ||||||||||||||||||||||| ||||||||  |||||||   ||||| |  | | |||| |||    
T  44860 ccagaggctgttgaccttctacatagagttcaaaaggtcatgcatagcaatgtcatgtttcctaggtccatgaatgttgttgtgttcacaaggatttgtt 44761  T
Q  187 ttaccatccaaaaaggcctagcggcgcagcttgttgctcgcttgccttcta 237  Q
    || ||||||||||||| |||||||||||| ||||||| |||||||||||||    
T  44760 ttgccatccaaaaaggtctagcggcgcagtttgttgcccgcttgccttcta 44710  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #12
Raw Score: 76; E-Value: 7e-35
Query Start/End: Original strand, 27 - 237
Target Start/End: Complemental strand, 13582594 - 13582387
Alignment:
Q  27 gtgttctgacaatcaacatatgcttttataacatctgcttttgacactttcaatttcgtagcaccagaggttgttgaccttctacatagagttcaaaggg 126  Q
    ||||||||||||||||| | |  ||||||| ||| || |||| |||||||  ||||| ||||||||    |||||||||||||||| |||||||||| ||    
T  13582594 gtgttctgacaatcaacgtgt--ttttataccatttgttttt-acacttttgatttcctagcaccaacaattgttgaccttctacagagagttcaaaagg 13582498  T
Q  127 tcatgcatagcaatgtcatgtctcctaggtttatgaatgttgtgcttgcgatgattggttttaccatccaaaaaggcctagcggcgcagcttgttgctcg 226  Q
    ||||||||| |||||||||||||||||||   |||||||||||| || ||| ||||| |||  |||||||||||||||||||| ||| | || |||| ||    
T  13582497 tcatgcataacaatgtcatgtctcctaggaccatgaatgttgtgtttacgaagattgatttagccatccaaaaaggcctagcgacgctgtttattgcccg 13582398  T
Q  227 cttgccttcta 237  Q
    |||||||||||    
T  13582397 cttgccttcta 13582387  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #13
Raw Score: 74; E-Value: 1e-33
Query Start/End: Original strand, 27 - 203
Target Start/End: Original strand, 52411913 - 52412087
Alignment:
Q  27 gtgttctgacaatcaacatatgcttttataacatctgcttttgacactttcaatttcgtagcaccagaggttgttgaccttctacatagagttcaaaggg 126  Q
    |||||||||||||||||||  ||||||||  ||| |||||||||||||||||  ||  || ||| ||| || ||||||||||||||||||||||||||||    
T  52411913 gtgttctgacaatcaacat--gcttttattccatttgcttttgacactttcagctttctaacactagatgtcgttgaccttctacatagagttcaaaggg 52412010  T
Q  127 tcatgcatagcaatgtcatgtctcctaggtttatgaatgttgtgcttgcgatgattggttttaccatccaaaaaggc 203  Q
    ||||||||| ||||||||||||||||||    || ||| ||||| || | ||||||| |||| ||||||||||||||    
T  52412011 tcatgcataacaatgtcatgtctcctagacccataaatattgtgtttacaatgattgattttgccatccaaaaaggc 52412087  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #14
Raw Score: 72; E-Value: 2e-32
Query Start/End: Original strand, 27 - 201
Target Start/End: Complemental strand, 38146141 - 38145969
Alignment:
Q  27 gtgttctgacaatcaacatatgcttttataacatctgcttttgacactttcaatttcgtagcaccagaggttgttgaccttctacatagagttcaaaggg 126  Q
    ||||| ||||||||||||| |  ||||||| ||| | | |||||||||||  | ||| ||||||||||||||||| || |||||| ||||||||||||||    
T  38146141 gtgttttgacaatcaacatgt--ttttataccatttacatttgacacttttgacttcctagcaccagaggttgtttacattctacttagagttcaaaggg 38146044  T
Q  127 tcatgcatagcaatgtcatgtctcctaggtttatgaatgttgtgcttgcgatgattggttttaccatccaaaaag 201  Q
    ||||||||| ||||||||||||||||||||  ||||| |||||| || ||||||||| ||||  |||| ||||||    
T  38146043 tcatgcataacaatgtcatgtctcctaggtccatgaacgttgtgtttacgatgattgattttgtcatctaaaaag 38145969  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #15
Raw Score: 69; E-Value: 1e-30
Query Start/End: Original strand, 27 - 222
Target Start/End: Original strand, 38670902 - 38671095
Alignment:
Q  27 gtgttctgacaatcaacatatgcttttataacatctgcttttgacactttcaatttcgtagcaccagaggttgttgaccttctacatagagttcaaaggg 126  Q
    |||||||||||||||||||  |||||||||  || || ||||||||||||    ||  ||||| ||||||  | ||||||||||||||||||  |||| |    
T  38670902 gtgttctgacaatcaacat--gcttttatacaatttgtttttgacacttttggctttctagcatcagaggcggatgaccttctacatagagtctaaagag 38670999  T
Q  127 tcatgcatagcaatgtcatgtctcctaggtttatgaatgttgtgcttgcgatgattggttttaccatccaaaaaggcctagcggcgcagcttgttg 222  Q
    | |||||||||||||| |||||||||||||  ||||||||||||  | ||| |||||||||| ||||| ||||| | |||||||||||||||||||    
T  38671000 ttatgcatagcaatgttatgtctcctaggtccatgaatgttgtgtgtacgaggattggttttgccatctaaaaaagtctagcggcgcagcttgttg 38671095  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #16
Raw Score: 65; E-Value: 3e-28
Query Start/End: Original strand, 46 - 208
Target Start/End: Complemental strand, 5338711 - 5338552
Alignment:
Q  46 atgcttttataacatctgcttttgacactttcaatttcgtagcaccagaggttgttgaccttctacatagagttcaaagggtcatgcatagcaatgtcat 145  Q
    |||||||||||  || ||||||||||||||||   ||| |||||| |||| |||||||| |||||||||||||||||| |||||||| |||||||||| |    
T  5338711 atgcttttatacaatttgcttttgacactttcggcttcctagcactagagattgttgacattctacatagagttcaaaaggtcatgcgtagcaatgtctt 5338612  T
Q  146 gtctcctaggtttatgaatgttgtgcttgcgatgattggttttaccatccaaaaaggcctagc 208  Q
    ||||| |||||    |||||||||| || ||| |||||||||| |||||||||| || |||||    
T  5338611 gtctcataggt---cgaatgttgtgtttacgaggattggttttgccatccaaaatggtctagc 5338552  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #17
Raw Score: 64; E-Value: 1e-27
Query Start/End: Original strand, 102 - 237
Target Start/End: Original strand, 4763888 - 4764022
Alignment:
Q  102 gaccttctacatagagttcaaagggtcatgcatagcaatgtcatgtctcctaggtttatgaatgttgtgcttgcgatgattggttttaccatccaaaaag 201  Q
    |||||||||||||||||||||| ||| |||||||||||||||||||||||| |||  |||||||||||| || ||| |||| |  || ||||||||||||    
T  4763888 gaccttctacatagagttcaaaaggttatgcatagcaatgtcatgtctcct-ggtccatgaatgttgtgtttacgaggattagaattgccatccaaaaag 4763986  T
Q  202 gcctagcggcgcagcttgttgctcgcttgccttcta 237  Q
    || | | |||||| |||||||| |||||||||||||    
T  4763987 gcttggtggcgcaacttgttgcccgcttgccttcta 4764022  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #18
Raw Score: 64; E-Value: 1e-27
Query Start/End: Original strand, 30 - 200
Target Start/End: Complemental strand, 7900940 - 7900772
Alignment:
Q  30 ttctgacaatcaacatatgcttttataacatctgcttttgacactttcaatttcgtagcaccagaggttgttgaccttctacatagagttcaaagggtca 129  Q
    ||||||||||||||||  ||||||||| ||| || |||||||||||||   ||| ||||| |||||||||||||||||||||||||||||  |||| | |    
T  7900940 ttctgacaatcaacat--gcttttataccatttgtttttgacactttcggcttcctagcatcagaggttgttgaccttctacatagagtttgaaggatta 7900843  T
Q  130 tgcatagcaatgtcatgtctcctaggtttatgaatgttgtgcttgcgatgattggttttaccatccaaaaa 200  Q
    | ||||||||||| |||| ||||||||  || ||| || || || | |||||| |||||||||||||||||    
T  7900842 tacatagcaatgttatgtttcctaggtccatcaatattttgtttacaatgattagttttaccatccaaaaa 7900772  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #19
Raw Score: 64; E-Value: 1e-27
Query Start/End: Original strand, 44 - 203
Target Start/End: Original strand, 38978836 - 38978995
Alignment:
Q  44 atatgcttttataacatctgcttttgacactttcaatttcgtagcaccagaggttgttgaccttctacatagagttcaaagggtcatgcatagcaatgtc 143  Q
    ||||| |||||||  || || ||||||||||||   |||| ||||||| ||||  |||||||||||||||| |||||||| ||| ||||||| |||||||    
T  38978836 atatgtttttatactatttgtttttgacacttttggtttcctagcacctgaggccgttgaccttctacatatagttcaaaaggtgatgcataacaatgtc 38978935  T
Q  144 atgtctcctaggtttatgaatgttgtgcttgcgatgattggttttaccatccaaaaaggc 203  Q
    ||||||| ||||||||| ||||||||| || |||  ||| ||||| ||||||||||||||    
T  38978936 atgtctcataggtttatcaatgttgtgtttacgaaaattagttttgccatccaaaaaggc 38978995  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #20
Raw Score: 57; E-Value: 2e-23
Query Start/End: Original strand, 85 - 201
Target Start/End: Complemental strand, 37992361 - 37992246
Alignment:
Q  85 tagcaccagaggttgttgaccttctacatagagttcaaagggtcatgcatagcaatgtcatgtctcctaggtttatgaatgttgtgcttgcgatgattgg 184  Q
    |||||| ||||||||||||||||||||| ||||||||| |||||||||| || ||||||||| ||| || ||  |||||||||||| || ||| ||||||    
T  37992361 tagcactagaggttgttgaccttctacaaagagttcaa-gggtcatgcacagtaatgtcatgactcgtacgtgcatgaatgttgtgttttcgaagattgg 37992263  T
Q  185 ttttaccatccaaaaag 201  Q
    ||||| |||||||||||    
T  37992262 ttttatcatccaaaaag 37992246  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #21
Raw Score: 56; E-Value: 6e-23
Query Start/End: Original strand, 46 - 153
Target Start/End: Complemental strand, 51234684 - 51234577
Alignment:
Q  46 atgcttttataacatctgcttttgacactttcaatttcgtagcaccagaggttgttgaccttctacatagagttcaaagggtcatgcatagcaatgtcat 145  Q
    ||||||||||| ||| |  ||||||||||||| | ||  ||||| ||||||||||||||||||||||||||||||||| ||| ||||||| |||||| ||    
T  51234684 atgcttttataccatttatttttgacactttcgactttctagcatcagaggttgttgaccttctacatagagttcaaaaggttatgcataacaatgttat 51234585  T
Q  146 gtctccta 153  Q
    ||||||||    
T  51234584 gtctccta 51234577  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #22
Raw Score: 54; E-Value: 1e-21
Query Start/End: Original strand, 50 - 230
Target Start/End: Original strand, 7502055 - 7502233
Alignment:
Q  50 ttttataacatctgcttttgacactttcaatttcgtagcaccagaggttgttgaccttctacatagagttcaaagggtcatgcatagcaatgtcatgtct 149  Q
    ||||||| ||| | ||||||||| |||   |||| ||||||||||||||||||||||||||||  ||||| ||||||||||||| | |||||||||| ||    
T  7502055 ttttataccattttcttttgacatttttggtttcctagcaccagaggttgttgaccttctaca--gagtttaaagggtcatgcacaacaatgtcatgact 7502152  T
Q  150 cctaggtttatgaatgttgtgcttgcgatgattggttttaccatccaaaaaggcctagcggcgcagcttgttgctcgcttg 230  Q
    | ||| |  |||||| || || || |||| |||| |||| | |||||||||| ||||| | | |||||||||||| |||||    
T  7502153 catagatccatgaatattatgtttacgataattgattttgctatccaaaaagacctagtgactcagcttgttgcttgcttg 7502233  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #23
Raw Score: 53; E-Value: 4e-21
Query Start/End: Original strand, 44 - 200
Target Start/End: Complemental strand, 4473131 - 4472976
Alignment:
Q  44 atatgcttttataacatctgcttttgacactttcaatttcgtagcaccagaggttgttgaccttctacatagagttcaaagggtcatgcatagcaatgtc 143  Q
    ||||| |||||||  || || |||||||||||||   ||| ||||||||||  || || |||||||||||| |||||||||  |||||||||||||| ||    
T  4473131 atatgtttttatactatttgtttttgacactttcggcttcctagcaccagaa-ttcttaaccttctacataaagttcaaagaatcatgcatagcaatttc 4473033  T
Q  144 atgtctcctaggtttatgaatgttgtgcttgcgatgattggttttaccatccaaaaa 200  Q
    ||||||||||||| ||||||| ||||| || |||  |||||||||  ||||||||||    
T  4473032 atgtctcctaggtctatgaatattgtgtttacgagaattggttttgtcatccaaaaa 4472976  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #24
Raw Score: 52; E-Value: 2e-20
Query Start/End: Original strand, 65 - 237
Target Start/End: Complemental strand, 21552717 - 21552541
Alignment:
Q  65 ttttgacactttcaatttcgtagcaccagaggttgttgaccttctacatagagttcaaagggtcatgcatagca----atgtcatgtctcctaggtttat 160  Q
    |||||||| ||||| |||| ||||| |||||  |||||||||||||||||||||||||| |||||||||||| |    || |||| ||||||||||  ||    
T  21552717 ttttgacattttcagtttcctagcatcagagactgttgaccttctacatagagttcaaaaggtcatgcatagtacgtaatatcatatctcctaggtccat 21552618  T
Q  161 gaatgttgtgcttgcgatgattggttttaccatccaaaaaggcctagcggcgcagcttgttgctcgcttgccttcta 237  Q
    |||||||||| || | |  |||||||||  ||||||||||| | |  ||||||| |||||||| || || |||||||    
T  21552617 gaatgttgtgtttacaagaattggttttgacatccaaaaagacttgacggcgcaacttgttgcccgtttaccttcta 21552541  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #25
Raw Score: 51; E-Value: 6e-20
Query Start/End: Original strand, 27 - 237
Target Start/End: Complemental strand, 49018048 - 49017844
Alignment:
Q  27 gtgttctgacaatcaacatatgcttttataacatctgcttttgacactttcaatttcgtagcaccagaggttgttgaccttctacatagagttcaaaggg 126  Q
    ||||||| ||||||||||| |  ||||||| ||| |  |||| ||||||||  |||| ||||||| ||||||||||| ||||||| || |||||||| ||    
T  49018048 gtgttctaacaatcaacatgt--ttttataccattttttttttacactttcggtttcctagcacccgaggttgttgatcttctacgtaaagttcaaaagg 49017951  T
Q  127 tcatgcatagcaatgtcatgtctcctaggtttatgaatgttgtgcttgcgatgattggttttaccatccaaaaaggcctagcggcgcagcttgttgctcg 226  Q
    |||||||||  ||||||||||    |||||  |||||||||||| ||  || ||||| |||| ||||||||||||     |||| |||||||||||  ||    
T  49017950 tcatgcatataaatgtcatgt----taggtcaatgaatgttgtgtttatgaggattgattttgccatccaaaaagtatcggcggtgcagcttgttgtccg 49017855  T
Q  227 cttgccttcta 237  Q
    |||||||||||    
T  49017854 cttgccttcta 49017844  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #26
Raw Score: 51; E-Value: 6e-20
Query Start/End: Original strand, 28 - 197
Target Start/End: Original strand, 54508407 - 54508574
Alignment:
Q  28 tgttctgacaatcaacatatgcttttataacatctgcttttgacactttcaatttcgtagcaccagaggttgttgaccttctacatagagttcaaagggt 127  Q
    |||||||||||| ||||| |  ||||||| ||| ||||||||||| |||  ||||  ||||||||||||||||||||||||| ||||  || |||||| |    
T  54508407 tgttctgacaattaacatgt--ttttatatcatttgcttttgacatttttgattttctagcaccagaggttgttgaccttctgcataaggtacaaaggat 54508504  T
Q  128 catgcatagcaatgtcatgtctcctaggtttatgaatgttgtgcttgcgatgattggttttaccatccaa 197  Q
    ||||| || |||| |||| ||| ||||||  |||||||||||| ||  ||| |||||||||  |||||||    
T  54508505 catgcgtaacaatatcatatctgctaggtccatgaatgttgtgtttaagataattggttttgtcatccaa 54508574  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #27
Raw Score: 50; E-Value: 2e-19
Query Start/End: Original strand, 28 - 223
Target Start/End: Original strand, 46940793 - 46940989
Alignment:
Q  28 tgttctgacaatcaacatatgcttttataacatctgcttttgacactttcaatttcgtagcaccagaggttgttgacc---ttctacatagagttcaaag 124  Q
    ||||| ||||||||||||  ||||||||| ||| || ||||||||||||  |  || |||||||| ||  | ||||||   |||||||||||||||||||    
T  46940793 tgttccgacaatcaacat--gcttttataccatttgtttttgacacttttgacgtcctagcaccatagactattgaccagcttctacatagagttcaaag 46940890  T
Q  125 ggtcatgcatagcaatgtcatgtctcctaggtttatgaatgttgtgcttgcgatgattggttttaccatccaaaaaggcctagcggcgcagcttgttgc 223  Q
    | |||||||   |||||||||| ||| |||||| |||||||||||| || |||  |||| ||||   |||||||||| |||||||| ||| ||||||||    
T  46940891 gatcatgcacgacaatgtcatgactcataggttcatgaatgttgtgtttacgaaaattgattttgttatccaaaaagacctagcggtgcaacttgttgc 46940989  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #28
Raw Score: 47; E-Value: 1e-17
Query Start/End: Original strand, 116 - 237
Target Start/End: Complemental strand, 3643149 - 3643030
Alignment:
Q  116 agttcaaagggtcatgcatagcaatgtcatgtctcctaggtttatgaatgttgtgcttgcgatgattggttttaccatccaaaaaggcctagcggcgcag 215  Q
    |||||||||| ||||||||| ||||||||||| |  |||||  |||||||||||| |||  ||||||| ||||  ||||| |||||||||| || |||||    
T  3643149 agttcaaaggatcatgcataacaatgtcatgttttttaggtccatgaatgttgtgtttg--atgattgattttgtcatccgaaaaggcctaacgacgcag 3643052  T
Q  216 cttgttgctcgcttgccttcta 237  Q
    ||| |||| |||||||||||||    
T  3643051 cttattgcccgcttgccttcta 3643030  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #29
Raw Score: 47; E-Value: 1e-17
Query Start/End: Original strand, 132 - 234
Target Start/End: Original strand, 4669788 - 4669890
Alignment:
Q  132 catagcaatgtcatgtctcctaggtttatgaatgttgtgcttgcgatgattggttttaccatccaaaaaggcctagcggcgcagcttgttgctcgcttgc 231  Q
    |||| |||||||||||||||| |||  |||||||||||| || ||||||||| ||||   |||||||||||  | ||||||||||||||||| |||||||    
T  4669788 cataacaatgtcatgtctccttggtccatgaatgttgtgtttacgatgattgattttgttatccaaaaaggtttggcggcgcagcttgttgcccgcttgc 4669887  T
Q  232 ctt 234  Q
    |||    
T  4669888 ctt 4669890  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #30
Raw Score: 39; E-Value: 0.0000000000009
Query Start/End: Original strand, 110 - 234
Target Start/End: Complemental strand, 8592144 - 8592021
Alignment:
Q  110 acatagagttcaaagggtcatgcatagcaatgtcatgtctcctaggtttatgaatgttgtgctt-gcgatgattggttttaccatccaaaaaggcctagc 208  Q
    ||||||||||||| | |||||||||| |||||||| | || ||||||  || ||| ||||| || |||  ||||| |||| ||||||||||||||| |||    
T  8592144 acatagagttcaacgagtcatgcatatcaatgtcacgccttctaggtccatcaatattgtgtttagcg--gattgattttgccatccaaaaaggcccagc 8592047  T
Q  209 ggcgcagcttgttgctcgcttgcctt 234  Q
    ||||||||||||| | | ||||||||    
T  8592046 ggcgcagcttgttacccacttgcctt 8592021  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #31
Raw Score: 36; E-Value: 0.00000000005
Query Start/End: Original strand, 100 - 203
Target Start/End: Original strand, 25094665 - 25094768
Alignment:
Q  100 ttgaccttctacatagagttcaaagggtcatgcatagcaatgtcatgtctcctaggtttatgaatgttgtgcttgcgatgattggttttaccatccaaaa 199  Q
    ||||||||||||||| |||||||| |||||||||||||||||| || |||  || ||  |||||||||||| |  ||| |||| ||||| | ||| ||||    
T  25094665 ttgaccttctacatatagttcaaatggtcatgcatagcaatgtaatatcttttaagtccatgaatgttgtgttcacgaagattagttttgcaatctaaaa 25094764  T
Q  200 aggc 203  Q
    ||||    
T  25094765 aggc 25094768  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #32
Raw Score: 36; E-Value: 0.00000000005
Query Start/End: Original strand, 107 - 206
Target Start/End: Original strand, 32690966 - 32691065
Alignment:
Q  107 tctacatagagttcaaagggtcatgcatagcaatgtcatgtctcctaggtttatgaatgttgtgcttgcgatgattggttttaccatccaaaaaggccta 206  Q
    ||||||||||||| |||| |||||||| |  ||| | |||||||||| || ||||||||||||| ||  || ||||| ||||| ||||||||||| ||||    
T  32690966 tctacatagagttaaaagagtcatgcacaataatattatgtctcctaagtctatgaatgttgtgtttaagaggattgattttatcatccaaaaagaccta 32691065  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #33
Raw Score: 36; E-Value: 0.00000000005
Query Start/End: Original strand, 100 - 203
Target Start/End: Complemental strand, 42206081 - 42205978
Alignment:
Q  100 ttgaccttctacatagagttcaaagggtcatgcatagcaatgtcatgtctcctaggtttatgaatgttgtgcttgcgatgattggttttaccatccaaaa 199  Q
    ||||| |||||||||||||| ||| |||||||||||| ||||| |||| |||||| |  || || |||||| || ||||||||| ||||| ||||  |||    
T  42206081 ttgacattctacatagagtttaaatggtcatgcatagaaatgtaatgtatcctagatccataaacgttgtgtttacgatgattgattttatcatcttaaa 42205982  T
Q  200 aggc 203  Q
    ||||    
T  42205981 aggc 42205978  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #34
Raw Score: 34; E-Value: 0.0000000009
Query Start/End: Original strand, 106 - 203
Target Start/End: Original strand, 7257655 - 7257752
Alignment:
Q  106 ttctacatagagttcaaagggtcatgcatagcaatgtcatgtctcctaggtttatgaatgttgtgcttgcgatgattggttttaccatccaaaaaggc 203  Q
    ||||||||| |||||||||||  || ||||||||| |||||| | ||||||  |||||||||||| || ||| |||| |||||  ||| |||||||||    
T  7257655 ttctacatatagttcaaagggctatccatagcaatatcatgtattctaggtccatgaatgttgtgtttacgaagattagttttgtcattcaaaaaggc 7257752  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #35
Raw Score: 34; E-Value: 0.0000000009
Query Start/End: Original strand, 100 - 169
Target Start/End: Original strand, 25190027 - 25190096
Alignment:
Q  100 ttgaccttctacatagagttcaaagggtcatgcatagcaatgtcatgtctcctaggtttatgaatgttgt 169  Q
    ||||||||||||| ||||||||||| |||||| |||| |||||  |||| |||| || ||||||||||||    
T  25190027 ttgaccttctacaaagagttcaaagagtcatgaatagaaatgtagtgtcgcctaagtatatgaatgttgt 25190096  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #36
Raw Score: 33; E-Value: 0.000000003
Query Start/End: Original strand, 159 - 235
Target Start/End: Complemental strand, 26276570 - 26276494
Alignment:
Q  159 atgaatgttgtgcttgcgatgattggttttaccatccaaaaaggcctagcggcgcagcttgttgctcgcttgccttc 235  Q
    |||||||||||| ||  || ||||| |||| ||||||||||||  ||||||| | |||||||||| |||||||||||    
T  26276570 atgaatgttgtgtttatgaggattgattttgccatccaaaaagatctagcggtgtagcttgttgcccgcttgccttc 26276494  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #37
Raw Score: 32; E-Value: 0.00000001
Query Start/End: Original strand, 122 - 153
Target Start/End: Complemental strand, 4190857 - 4190826
Alignment:
Q  122 aagggtcatgcatagcaatgtcatgtctccta 153  Q
    ||||||||||||||||||||||||||||||||    
T  4190857 aagggtcatgcatagcaatgtcatgtctccta 4190826  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #38
Raw Score: 32; E-Value: 0.00000001
Query Start/End: Original strand, 122 - 153
Target Start/End: Complemental strand, 4191029 - 4190998
Alignment:
Q  122 aagggtcatgcatagcaatgtcatgtctccta 153  Q
    ||||||||||||||||||||||||||||||||    
T  4191029 aagggtcatgcatagcaatgtcatgtctccta 4190998  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #39
Raw Score: 32; E-Value: 0.00000001
Query Start/End: Original strand, 111 - 202
Target Start/End: Original strand, 26393790 - 26393881
Alignment:
Q  111 catagagttcaaagggtcatgcatagcaatgtcatgtctcctaggtttatgaatgttgtgcttgcgatgattggttttaccatccaaaaagg 202  Q
    ||||||||| |||||| |||  |||||||| | ||||||||| ||| ||||||||||||| || ||| ||||| | || |||||||| ||||    
T  26393790 catagagttaaaagggacattgatagcaatattatgtctccttggtctatgaatgttgtgtttacgaggattgatatttccatccaacaagg 26393881  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #40
Raw Score: 31; E-Value: 0.00000005
Query Start/End: Original strand, 67 - 149
Target Start/End: Complemental strand, 43123192 - 43123110
Alignment:
Q  67 ttgacactttcaatttcgtagcaccagaggttgttgaccttctacatagagttcaaagggtcatgcatagcaatgtcatgtct 149  Q
    ||||||||||  ||||  |||||||| || |||||||| ||||||| | ||||||||||||| ||||||| ||| | ||||||    
T  43123192 ttgacacttttgattttctagcaccatagtttgttgactttctacaaaaagttcaaagggtcgtgcatagaaatattatgtct 43123110  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #41
Raw Score: 29; E-Value: 0.0000008
Query Start/End: Original strand, 96 - 140
Target Start/End: Original strand, 4669086 - 4669130
Alignment:
Q  96 gttgttgaccttctacatagagttcaaagggtcatgcatagcaat 140  Q
    |||||||||||||||||||||||||| | | ||||||||| ||||    
T  4669086 gttgttgaccttctacatagagttcagaagatcatgcataacaat 4669130  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8 (Bit Score: 140; Significance: 5e-73; HSPs: 37)
Name: chr8
Description:

Target: chr8; HSP #1
Raw Score: 140; E-Value: 5e-73
Query Start/End: Original strand, 27 - 237
Target Start/End: Complemental strand, 38815379 - 38815171
Alignment:
Q  27 gtgttctgacaatcaacatatgcttttataacatctgcttttgacactttcaatttcgtagcaccagaggttgttgaccttctacatagagttcaaaggg 126  Q
    |||||||||||||||||||  ||||||||| ||| ||||||||||||||||   ||| |||||||||||| |||||||||||||||||||||||||||||    
T  38815379 gtgttctgacaatcaacat--gcttttataccatttgcttttgacactttccgcttcctagcaccagagggtgttgaccttctacatagagttcaaaggg 38815282  T
Q  127 tcatgcatagcaatgtcatgtctcctaggtttatgaatgttgtgcttgcgatgattggttttaccatccaaaaaggcctagcggcgcagcttgttgctcg 226  Q
    ||||||||||||||||||||||||||||||  |||||||||||| || ||| |||||||||| |||||||||||||| ||||||||||||||||||| ||    
T  38815281 tcatgcatagcaatgtcatgtctcctaggtccatgaatgttgtgtttacgaggattggtttttccatccaaaaaggcttagcggcgcagcttgttgcccg 38815182  T
Q  227 cttgccttcta 237  Q
    |||||||||||    
T  38815181 cttgccttcta 38815171  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #2
Raw Score: 102; E-Value: 2e-50
Query Start/End: Original strand, 65 - 234
Target Start/End: Original strand, 22589395 - 22589563
Alignment:
Q  65 ttttgacactttcaatttcgtagcaccagaggttgttgaccttctacatagagttcaaagggtcatgcatagcaatgtcatgtctcctaggtttatgaat 164  Q
    |||||||||||||  |||| |||||||||||| ||||||| || ||||||||||||||| |||||||||||||||||||||||||| ||||| |||||||    
T  22589395 ttttgacactttcggtttcctagcaccagaggctgttgacttt-tacatagagttcaaaaggtcatgcatagcaatgtcatgtctcataggtctatgaat 22589493  T
Q  165 gttgtgcttgcgatgattggttttaccatccaaaaaggcctagcggcgcagcttgttgctcgcttgcctt 234  Q
    |||||| |  ||| |||||||||| ||||||||||||| |||||||||||||||||||| ||||||||||    
T  22589494 gttgtgttcacgaggattggttttgccatccaaaaaggtctagcggcgcagcttgttgcccgcttgcctt 22589563  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #3
Raw Score: 96; E-Value: 9e-47
Query Start/End: Original strand, 27 - 237
Target Start/End: Complemental strand, 3188054 - 3187847
Alignment:
Q  27 gtgttctgacaatcaacatatgcttttataacatctgcttttgacactttcaatttcgtagcaccagaggttgttgaccttctacatagagttcaaaggg 126  Q
    |||||||||||||||||||  ||||||||| ||| ||||||||| ||||||   ||| ||||| ||||||||||| |||||||||||||||| |||||||    
T  3188054 gtgttctgacaatcaacat--gcttttataccatttgcttttgaaactttcggcttcctagcatcagaggttgttaaccttctacatagagt-caaaggg 3187958  T
Q  127 tcatgcatagcaatgtcatgtctcctaggtttatgaatgttgtgcttgcgatgattggttttaccatccaaaaaggcctagcggcgcagcttgttgctcg 226  Q
    | |||||||||||||| |||||||||||||  |||||||||||| || |||  ||||||||| ||||||||||||| ||| ||| ||||||| ||||||     
T  3187957 ttatgcatagcaatgttatgtctcctaggtccatgaatgttgtgtttacgagaattggttttgccatccaaaaaggtctaacggtgcagcttattgctca 3187858  T
Q  227 cttgccttcta 237  Q
    ||||| |||||    
T  3187857 cttgcattcta 3187847  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #4
Raw Score: 88; E-Value: 5e-42
Query Start/End: Original strand, 31 - 237
Target Start/End: Complemental strand, 24125109 - 24124905
Alignment:
Q  31 tctgacaatcaacatatgcttttataacatctgcttttgacactttcaatttcgtagcaccagaggttgttgaccttctacatagagttcaaagggtcat 130  Q
    |||||||||||||||  ||||||||| ||| ||||||||||| |||  ||||| |||||||||||||||||| ||||||||||| |||||||| ||||||    
T  24125109 tctgacaatcaacat--gcttttataccatttgcttttgacaattttgatttcctagcaccagaggttgttggccttctacataaagttcaaaaggtcat 24125012  T
Q  131 gcatagcaatgtcatgtctcctaggtttatgaatgttgtgcttgcgatgattggttttaccatccaaaaaggcctagcggcgcagcttgttgctcgcttg 230  Q
    |||||||||||||||||||| |||||  |||||||||||| || | | |||| ||||| ||||||  ||| || | |||||||||||| ||   ||||||    
T  24125011 gcatagcaatgtcatgtctcataggtccatgaatgttgtgtttacaaggattagttttgccatccgtaaaagcttggcggcgcagcttttttgccgcttg 24124912  T
Q  231 ccttcta 237  Q
    |||||||    
T  24124911 ccttcta 24124905  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #5
Raw Score: 87; E-Value: 2e-41
Query Start/End: Original strand, 79 - 237
Target Start/End: Complemental strand, 18804647 - 18804490
Alignment:
Q  79 atttcgtagcaccagaggttgttgaccttctacatagagttcaaagggtcatgcatagcaatgtcatgtctcctaggtttatgaatgttgtgcttgcgat 178  Q
    ||||| |||||||||||| ||||||||||||||||||| |||||| ||||||||||| |||||||||| |||||||||| | || |||| || || |||     
T  18804647 atttcctagcaccagaggctgttgaccttctacatagatttcaaaaggtcatgcataacaatgtcatgactcctaggttca-gagtgttttgtttacgag 18804549  T
Q  179 gattggttttaccatccaaaaaggcctagcggcgcagcttgttgctcgcttgccttcta 237  Q
    |||||||||| ||||||||||||| ||||||||||||||||||||  ||||||||||||    
T  18804548 gattggttttgccatccaaaaaggtctagcggcgcagcttgttgcctgcttgccttcta 18804490  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #6
Raw Score: 85; E-Value: 3e-40
Query Start/End: Original strand, 27 - 218
Target Start/End: Complemental strand, 6592660 - 6592472
Alignment:
Q  27 gtgttctgacaatcaacatatgcttttataacatctgcttttgacactttcaatttcgtagcaccagaggttgttgaccttctacatagagttcaaaggg 126  Q
    ||||||| |||||||||||  | ||||| | ||| ||||||||||||||||| |||| |||| |||||||||||||||||||| ||||||||||||| ||    
T  6592660 gtgttctcacaatcaacat--gattttaaaccatttgcttttgacactttcagtttcctagctccagaggttgttgaccttctgcatagagttcaaaagg 6592563  T
Q  127 tcatgcatagcaatgtcatgtctcctaggtttatgaatgttgtgcttgcgatgattggttttaccatccaaaaaggcctagcggcgcagctt 218  Q
    |||||||||  ||||||||||||| |||||| |||||||||||| || |||  |||||||||  |||||| ||||| |||||||| ||||||    
T  6592562 tcatgcata-taatgtcatgtctcataggttcatgaatgttgtgtttacgagtattggttttgtcatccagaaaggtctagcggcacagctt 6592472  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #7
Raw Score: 85; E-Value: 3e-40
Query Start/End: Original strand, 62 - 234
Target Start/End: Complemental strand, 37514273 - 37514101
Alignment:
Q  62 tgcttttgacactttcaatttcgtagcaccagaggttgttgaccttctacatagagttcaaagggtcatgcatagcaatgtcatgtctcctaggtttatg 161  Q
    |||||||||||||||||||||| |||| ||||||| |||||||||||||||||||||||||| ||||||||||| |||||| | ||||| |||||  |||    
T  37514273 tgcttttgacactttcaatttcctagcgccagaggctgttgaccttctacatagagttcaaaaggtcatgcatatcaatgttacgtctcttaggtccatg 37514174  T
Q  162 aatgttgtgcttgcgatgattggttttaccatccaaaaaggcctagcggcgcagcttgttgctcgcttgcctt 234  Q
    ||||||||  |  ||| ||||| | || ||| ||||||||| ||| |||||||||||||||| ||||||||||    
T  37514173 aatgttgtattcacgaggattgatcttgccacccaaaaaggtctaacggcgcagcttgttgcccgcttgcctt 37514101  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #8
Raw Score: 83; E-Value: 5e-39
Query Start/End: Original strand, 27 - 224
Target Start/End: Complemental strand, 39434752 - 39434557
Alignment:
Q  27 gtgttctgacaatcaacatatgcttttataacatctgcttttgacactttcaatttcgtagcaccagaggttgttgaccttctacatagagttcaaaggg 126  Q
    |||||||||||||||||||  ||||||||| ||| || ||||||||||||  | ||| ||||| ||||||   |||| |||||||||||||| |||||||    
T  39434752 gtgttctgacaatcaacat--gcttttataccatttgtttttgacacttttgacttcctagcatcagaggcatttgatcttctacatagagtccaaaggg 39434655  T
Q  127 tcatgcatagcaatgtcatgtctcctaggtttatgaatgttgtgcttgcgatgattggttttaccatccaaaaaggcctagcggcgcagcttgttgct 224  Q
    | ||||||| |||||| ||||||| ||| |  |||||||||||| || ||| ||||| |||| ||||||||||||| |||||||||||||||||||||    
T  39434654 ttatgcatatcaatgtaatgtctcttagatccatgaatgttgtgtttacgaggattgattttgccatccaaaaaggtctagcggcgcagcttgttgct 39434557  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #9
Raw Score: 74; E-Value: 1e-33
Query Start/End: Original strand, 29 - 169
Target Start/End: Original strand, 35740010 - 35740148
Alignment:
Q  29 gttctgacaatcaacatatgcttttataacatctgcttttgacactttcaatttcgtagcaccagaggttgttgaccttctacatagagttcaaagggtc 128  Q
    ||||||||||||||||| |  |||||||  ||  |||||||||||||||| |||| ||||||||||| |||||||||||||||||||||||||||  |||    
T  35740010 gttctgacaatcaacatgt--ttttatacaattagcttttgacactttcagtttcctagcaccagagattgttgaccttctacatagagttcaaaaagtc 35740107  T
Q  129 atgcatagcaatgtcatgtctcctaggtttatgaatgttgt 169  Q
    ||||||| |||||||||||| ||||||||| | ||||||||    
T  35740108 atgcataacaatgtcatgtcccctaggtttgtaaatgttgt 35740148  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #10
Raw Score: 67; E-Value: 2e-29
Query Start/End: Original strand, 89 - 167
Target Start/End: Complemental strand, 3821249 - 3821171
Alignment:
Q  89 accagaggttgttgaccttctacatagagttcaaagggtcatgcatagcaatgtcatgtctcctaggtttatgaatgtt 167  Q
    ||||||||||||||||||||||||||||||||||||||| ||||||||||||||||||||||||||||| || ||||||    
T  3821249 accagaggttgttgaccttctacatagagttcaaagggtaatgcatagcaatgtcatgtctcctaggttcataaatgtt 3821171  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #11
Raw Score: 64; E-Value: 1e-27
Query Start/End: Original strand, 27 - 221
Target Start/End: Complemental strand, 6618369 - 6618178
Alignment:
Q  27 gtgttctgacaatcaacatatgcttttataacatctgcttttgacactttcaatttcgtagcaccagaggttgttgaccttctacatagagttcaaaggg 126  Q
    ||||||| |||||||||||  | ||||| | ||| ||||||||||||||||| |||| |||| |||||| ||||||||||| | ||||| ||||||| ||    
T  6618369 gtgttctcacaatcaacat--gattttaaaccatttgcttttgacactttcagtttcctagctccagagattgttgaccttttgcatagcgttcaaaagg 6618272  T
Q  127 tcatgcatagcaatgtcatgtctcctaggtttatgaatgttgtgcttgcgatgattggttttaccatccaaaaaggcctagcggcgcagcttgtt 221  Q
    |||||||||  ||||||||||||| |||||  ||||||||| || || |||  |||||||||  |||||||||||  ||| |||| |||||||||    
T  6618271 tcatgcata-taatgtcatgtctcataggtccatgaatgttatgtttacgagtattggttttgtcatccaaaaagatctaacggcacagcttgtt 6618178  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #12
Raw Score: 64; E-Value: 1e-27
Query Start/End: Original strand, 27 - 237
Target Start/End: Original strand, 25021836 - 25022044
Alignment:
Q  27 gtgttctgacaatcaacatatgcttttataacatctgcttttgacactttcaatttcgtagcaccagaggttgttgaccttctacatagagttcaaaggg 126  Q
    ||||||| ||||||||||| |  ||||||| ||| | ||||||||| |||    ||| ||||||||||||||||||||| || ||| | |||||||||||    
T  25021836 gtgttctcacaatcaacatgt--ttttataccattttcttttgacatttttggcttcctagcaccagaggttgttgaccatccacacaaagttcaaaggg 25021933  T
Q  127 tcatgcatagcaatgtcatgtctcctaggtttatgaatgttgtgcttgcgatgattggttttaccatccaaaaaggcctagcggcgcagcttgttgctcg 226  Q
    ||||||| | ||||||||| ||||||||||  | |||||||||| || | ||||||| ||||| ||||||||||   |||||| || ||||||||| | |    
T  25021934 tcatgcacaacaatgtcatatctcctaggtccaggaatgttgtgtttacaatgattgattttatcatccaaaaaattctagcgacgtagcttgttgtttg 25022033  T
Q  227 cttgccttcta 237  Q
     ||||||||||    
T  25022034 tttgccttcta 25022044  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #13
Raw Score: 63; E-Value: 4e-27
Query Start/End: Original strand, 85 - 223
Target Start/End: Complemental strand, 4699899 - 4699762
Alignment:
Q  85 tagcaccagaggttgttgaccttctacatagagttcaaagggtcatgcatagcaatgtcatgtctcctaggtttatgaatgttgtgcttgcgatgattgg 184  Q
    |||||||||||| ||||||||||||| ||| |||||||||| ||||| |||||||| | ||||| |||||||  |||||||||||| || | | |||| |    
T  4699899 tagcaccagaggctgttgaccttctatataaagttcaaagg-tcatgaatagcaatattatgtcacctaggtccatgaatgttgtgtttacaaggattag 4699801  T
Q  185 ttttaccatccaaaaaggcctagcggcgcagcttgttgc 223  Q
    |||| |||||||||||||| ||| |||||||||||||||    
T  4699800 ttttgccatccaaaaaggcttagtggcgcagcttgttgc 4699762  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #14
Raw Score: 55; E-Value: 3e-22
Query Start/End: Original strand, 58 - 223
Target Start/End: Original strand, 8540428 - 8540596
Alignment:
Q  58 catctgcttttgacactttcaatttcgtagcaccagaggttgttgaccttctacatag---agttcaaagggtcatgcatagcaatgtcatgtctcctag 154  Q
    ||||||| |||||||||||||| ||  || || |||||||||||||| |||||||||    ||||||||||||||||| || ||||||||||| | |||     
T  8540428 catctgcatttgacactttcaactttctaacatcagaggttgttgactttctacataataaagttcaaagggtcatgcttaacaatgtcatgttttctat 8540527  T
Q  155 gtttatgaatgttgtgcttgcgatgattggttttaccatccaaaaaggcctagcggcgcagcttgttgc 223  Q
     || || ||||||||| || ||||||||| ||||| ||||||||||| | |||| || || ||||||||    
T  8540528 tttcataaatgttgtgtttacgatgattgattttatcatccaaaaagacgtagcagcacaacttgttgc 8540596  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #15
Raw Score: 51; E-Value: 6e-20
Query Start/End: Original strand, 89 - 235
Target Start/End: Complemental strand, 4073559 - 4073413
Alignment:
Q  89 accagaggttgttgaccttctacatagagttcaaagggtcatgcatagcaatgtcatgtctcctaggtttatgaatgttgtgcttgcgatgattggtttt 188  Q
    |||||||||||||||||||||||| |||  |||| | |||||||||||||||||||||| ||| || |   ||||||||||| || |||  |||| ||||    
T  4073559 accagaggttgttgaccttctacagagaaatcaatgagtcatgcatagcaatgtcatgtttccaagatccgtgaatgttgtgtttacgagaattgatttt 4073460  T
Q  189 accatccaaaaaggcctagcggcgcagcttgttgctcgcttgccttc 235  Q
    | |||||||||| || ||||| | || |||||| | |||||||||||    
T  4073459 atcatccaaaaaagcttagcgacacaacttgtttcccgcttgccttc 4073413  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #16
Raw Score: 50; E-Value: 2e-19
Query Start/End: Original strand, 50 - 223
Target Start/End: Complemental strand, 28196256 - 28196084
Alignment:
Q  50 ttttataacatctgcttttgacactttcaatttcgtagcaccagaggttgttgaccttctacatagagttcaaagggtcatgcatagcaatgtcatgtct 149  Q
    ||||||| ||| || ||||||||||||    ||| |||||||| |||||||||||| ||||| ||||||||||||| ||||||| | |||||||||||||    
T  28196256 ttttataccatttgtttttgacacttttgtcttcctagcaccataggttgttgaccatctacgtagagttcaaaggatcatgcacaacaatgtcatgtct 28196157  T
Q  150 cctaggtttatgaatgttgtgcttgcgatgattggttttaccatccaaaaaggcctagcggcgcagcttgttgc 223  Q
    ||||| |  | | |||||||| || ||   |||| ||||  |||||||||| ||||| ||||||| ||||||||    
T  28196156 cctagatccacggatgttgtgtttacgggaattgattttgtcatccaaaaa-gcctaacggcgcaacttgttgc 28196084  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #17
Raw Score: 50; E-Value: 2e-19
Query Start/End: Original strand, 80 - 145
Target Start/End: Original strand, 40223476 - 40223541
Alignment:
Q  80 tttcgtagcaccagaggttgttgaccttctacatagagttcaaagggtcatgcatagcaatgtcat 145  Q
    |||| ||||||| ||||||||||||||||||||||||||||||| ||||||||||| |||||||||    
T  40223476 tttcctagcaccggaggttgttgaccttctacatagagttcaaaaggtcatgcataacaatgtcat 40223541  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #18
Raw Score: 49; E-Value: 1e-18
Query Start/End: Original strand, 89 - 169
Target Start/End: Complemental strand, 3863342 - 3863262
Alignment:
Q  89 accagaggttgttgaccttctacatagagttcaaagggtcatgcatagcaatgtcatgtctcctaggtttatgaatgttgt 169  Q
    |||||||||| ||||||||||||||||||||||||||||  |||||||||||||||| | ||||| || ||||||| ||||    
T  3863342 accagaggttattgaccttctacatagagttcaaagggtagtgcatagcaatgtcatctttcctaagtctatgaatattgt 3863262  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #19
Raw Score: 49; E-Value: 1e-18
Query Start/End: Original strand, 92 - 200
Target Start/End: Original strand, 9259377 - 9259485
Alignment:
Q  92 agaggttgttgaccttctacatagagttcaaagggtcatgcatagcaatgtcatgtctcctaggtttatgaatgttgtgcttgcgatgattggttttacc 191  Q
    |||||||||||||||||||||||||||||| ||  ||||||||||||||||||| | ||||| ||  |||||||||||  || ||| ||||| ||||  |    
T  9259377 agaggttgttgaccttctacatagagttcacagactcatgcatagcaatgtcatatatcctaagtccatgaatgttgtatttacgaagattgattttgtc 9259476  T
Q  192 atccaaaaa 200  Q
    |||||||||    
T  9259477 atccaaaaa 9259485  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #20
Raw Score: 48; E-Value: 4e-18
Query Start/End: Original strand, 50 - 237
Target Start/End: Complemental strand, 43824053 - 43823866
Alignment:
Q  50 ttttataacatctgcttttgacactttcaatttcgtagcaccagaggttgttgaccttctacatagagttcaaagggtcatgcatagcaatgtcatgtct 149  Q
    ||||||| ||| |||||||||||||||    ||| | |||  ||||| | ||||||||  |||||||||||||| |||||||||||||||||||||||||    
T  43824053 ttttataccatttgcttttgacacttttggcttccttgcattagaggctattgacctttcacatagagttcaaatggtcatgcatagcaatgtcatgtct 43823954  T
Q  150 cctaggtttatgaatgttgtgcttgcgatgattggttttaccatccaaaaaggcctagcggcgcagcttgttgctcgcttgccttcta 237  Q
    || || |  || ||||||||| || ||   ||||| |||  |||| ||||||||||||  ||||| ||| |||| | |||||||||||    
T  43823953 ccgagatccattaatgttgtgtttacggcaattgggtttgtcatctaaaaaggcctagttgcgcaactttttgccctcttgccttcta 43823866  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #21
Raw Score: 46; E-Value: 6e-17
Query Start/End: Original strand, 27 - 143
Target Start/End: Complemental strand, 500312 - 500199
Alignment:
Q  27 gtgttctgacaatcaacatatgcttttataacatctgcttttgacactttcaatttcgtagcaccagaggttgttgaccttctacatagagttcaaaggg 126  Q
    |||||||||||||||||||  ||||||||| ||| | ||||||||| ||||  |||| ||| |  |||||| |||| |||||||||||||||||||| ||    
T  500312 gtgttctgacaatcaacat--gcttttataccatttacttttgacattttcggtttcctagtatgagaggt-gttggccttctacatagagttcaaaagg 500216  T
Q  127 tcatgcatagcaatgtc 143  Q
    ||||||||| |||||||    
T  500215 tcatgcatatcaatgtc 500199  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #22
Raw Score: 44; E-Value: 9e-16
Query Start/End: Original strand, 92 - 147
Target Start/End: Complemental strand, 8115834 - 8115779
Alignment:
Q  92 agaggttgttgaccttctacatagagttcaaagggtcatgcatagcaatgtcatgt 147  Q
    ||||||||||||||||||||||| |||||||||| |||||||| ||||||||||||    
T  8115834 agaggttgttgaccttctacataaagttcaaaggatcatgcattgcaatgtcatgt 8115779  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #23
Raw Score: 43; E-Value: 0.000000000000004
Query Start/End: Original strand, 92 - 206
Target Start/End: Original strand, 5329687 - 5329801
Alignment:
Q  92 agaggttgttgaccttctacatagagttcaaagggtcatgcatagcaatgtcatgtctcctaggtttatgaatgttgtgcttgcgatgattggttttacc 191  Q
    |||| ||||||||||||| ||| ||||||||||||||||| | | |||| |||||||||||| || ||| ||||||||| ||  || ||||  ||||  |    
T  5329687 agagattgttgaccttctgcattgagttcaaagggtcatggacaacaatatcatgtctcctatgtctatcaatgttgtgtttatgaggattaattttgac 5329786  T
Q  192 atccaaaaaggccta 206  Q
    |||||||||||||||    
T  5329787 atccaaaaaggccta 5329801  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #24
Raw Score: 43; E-Value: 0.000000000000004
Query Start/End: Original strand, 85 - 167
Target Start/End: Original strand, 39671250 - 39671332
Alignment:
Q  85 tagcaccagaggttgttgaccttctacatagagttcaaagggtcatgcatagcaatgtcatgtctcctaggtttatgaatgtt 167  Q
    ||||||||||||||||| ||||| ||| ||||||| ||||||||||| |||  ||||||||||||||||| |  |||||||||    
T  39671250 tagcaccagaggttgttaaccttttacgtagagttaaaagggtcatgaataaaaatgtcatgtctcctagatccatgaatgtt 39671332  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #25
Raw Score: 42; E-Value: 0.00000000000001
Query Start/End: Original strand, 89 - 226
Target Start/End: Complemental strand, 3825660 - 3825524
Alignment:
Q  89 accagaggttgttgaccttctacatagagttcaaagggtcatgcatagcaatgtcatgtctcctaggtttatgaatgttgtgcttgcgatgattggtttt 188  Q
    |||| ||||||||||||||||||| ||| ||||||| || ||||||||||| ||||||| || ||| |  |||||| ||||| || ||||||||  | ||    
T  3825660 accataggttgttgaccttctacacagaattcaaagagtaatgcatagcaacgtcatgtttcatagatccatgaatattgtgtttacgatgattaatatt 3825561  T
Q  189 accatccaaaaaggcctagcggcgcagcttgttgctcg 226  Q
     ||||  |||||  |||||||||||| |||||||||||    
T  3825560 gccat-taaaaaaacctagcggcgcaacttgttgctcg 3825524  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #26
Raw Score: 40; E-Value: 0.0000000000002
Query Start/End: Original strand, 130 - 201
Target Start/End: Complemental strand, 4066829 - 4066758
Alignment:
Q  130 tgcatagcaatgtcatgtctcctaggtttatgaatgttgtgcttgcgatgattggttttaccatccaaaaag 201  Q
    ||||||||||||| |||| ||||||||  |||| ||||||| |  |||||||||||||||||||||||||||    
T  4066829 tgcatagcaatgtaatgtgtcctaggtccatgactgttgtgttcacgatgattggttttaccatccaaaaag 4066758  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #27
Raw Score: 39; E-Value: 0.0000000000009
Query Start/End: Original strand, 129 - 199
Target Start/End: Complemental strand, 24451105 - 24451036
Alignment:
Q  129 atgcatagcaatgtcatgtctcctaggtttatgaatgttgtgcttgcgatgattggttttaccatccaaaa 199  Q
    ||||||||||||||||||||||||||||  |||||||||||| |  |||||||| ||||| ||||||||||    
T  24451105 atgcatagcaatgtcatgtctcctaggtccatgaatgttgtgttcacgatgatt-gttttgccatccaaaa 24451036  T

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Target: chr8; HSP #28
Raw Score: 36; E-Value: 0.00000000005
Query Start/End: Original strand, 111 - 202
Target Start/End: Complemental strand, 42659230 - 42659139
Alignment:
Q  111 catagagttcaaagggtcatgcatagcaatgtcatgtctcctaggtttatgaatgttgtgcttgcgatgattggttttaccatccaaaaagg 202  Q
    ||||||||  ||||||| |||||||||||| | |||||| ||||||| |||||||||||| || ||| ||||  ||||  ||||||||||||    
T  42659230 catagagtctaaagggttatgcatagcaatattatgtcttctaggttcatgaatgttgtgtttacgaggattaattttgtcatccaaaaagg 42659139  T

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Target: chr8; HSP #29
Raw Score: 35; E-Value: 0.0000000002
Query Start/End: Original strand, 159 - 237
Target Start/End: Complemental strand, 500197 - 500119
Alignment:
Q  159 atgaatgttgtgcttgcgatgattggttttaccatccaaaaaggcctagcggcgcagcttgttgctcgcttgccttcta 237  Q
    |||||||||||| || ||| ||||| ||||||||| ||||||||| |  |||| |||||| |||| |||||||||||||    
T  500197 atgaatgttgtgtttacgaggattgattttaccattcaaaaaggcttgacggcacagcttattgcccgcttgccttcta 500119  T

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Target: chr8; HSP #30
Raw Score: 35; E-Value: 0.0000000002
Query Start/End: Original strand, 106 - 156
Target Start/End: Original strand, 12598162 - 12598212
Alignment:
Q  106 ttctacatagagttcaaagggtcatgcatagcaatgtcatgtctcctaggt 156  Q
    ||||||| |||||||||||||||||||||||||| ||  ||||||||||||    
T  12598162 ttctacaaagagttcaaagggtcatgcatagcaacgttgtgtctcctaggt 12598212  T

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Target: chr8; HSP #31
Raw Score: 35; E-Value: 0.0000000002
Query Start/End: Original strand, 179 - 237
Target Start/End: Original strand, 18596771 - 18596829
Alignment:
Q  179 gattggttttaccatccaaaaaggcctagcggcgcagcttgttgctcgcttgccttcta 237  Q
    |||||||||| |||||| |||||| |||||||||||||||||||   ||||||||||||    
T  18596771 gattggttttgccatccgaaaaggtctagcggcgcagcttgttgtcagcttgccttcta 18596829  T

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Target: chr8; HSP #32
Raw Score: 34; E-Value: 0.0000000009
Query Start/End: Original strand, 138 - 223
Target Start/End: Complemental strand, 8882320 - 8882235
Alignment:
Q  138 aatgtcatgtctcctaggtttatgaatgttgtgcttgcgatgattggttttaccatccaaaaaggcctagcggcgcagcttgttgc 223  Q
    |||||||||||||||||||  |||||||||||| || ||| ||||  |||| ||||| ||||| |  || ||||||||||||||||    
T  8882320 aatgtcatgtctcctaggtccatgaatgttgtgtttacgaggattaattttgccatcaaaaaatgtttaacggcgcagcttgttgc 8882235  T

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Target: chr8; HSP #33
Raw Score: 34; E-Value: 0.0000000009
Query Start/End: Original strand, 27 - 123
Target Start/End: Complemental strand, 8882412 - 8882319
Alignment:
Q  27 gtgttctgacaatcaacatatgcttttataacatctgcttttgacactttcaatttcgtagcaccagaggttgttgaccttctacatagagttcaaa 123  Q
    ||||||||||||||||  |||||||||| | ||| || |||||| ||||||| |||  ||||||||||||||||||| | |  ||||||||||||||    
T  8882412 gtgttctgacaatcaa--tatgcttttaaaccatttgtttttga-actttcagttttctagcaccagaggttgttgaacattcacatagagttcaaa 8882319  T

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Target: chr8; HSP #34
Raw Score: 33; E-Value: 0.000000003
Query Start/End: Original strand, 181 - 233
Target Start/End: Complemental strand, 44337272 - 44337221
Alignment:
Q  181 ttggttttaccatccaaaaaggcctagcggcgcagcttgttgctcgcttgcct 233  Q
    |||||||| ||||||||||||| | |||||| |||||||||||||||||||||    
T  44337272 ttggttttgccatccaaaaaggtccagcggc-cagcttgttgctcgcttgcct 44337221  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #35
Raw Score: 32; E-Value: 0.00000001
Query Start/End: Original strand, 96 - 147
Target Start/End: Original strand, 10950739 - 10950790
Alignment:
Q  96 gttgttgaccttctacatagagttcaaagggtcatgcatagcaatgtcatgt 147  Q
    ||||||||||||||||||| ||||||||||||||   ||| |||||||||||    
T  10950739 gttgttgaccttctacataaagttcaaagggtcacatataacaatgtcatgt 10950790  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #36
Raw Score: 32; E-Value: 0.00000001
Query Start/End: Original strand, 96 - 147
Target Start/End: Original strand, 10958744 - 10958795
Alignment:
Q  96 gttgttgaccttctacatagagttcaaagggtcatgcatagcaatgtcatgt 147  Q
    ||||||||||||||||||| ||||||||||||||   ||| |||||||||||    
T  10958744 gttgttgaccttctacataaagttcaaagggtcacatataacaatgtcatgt 10958795  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #37
Raw Score: 31; E-Value: 0.00000005
Query Start/End: Original strand, 62 - 148
Target Start/End: Original strand, 121776 - 121862
Alignment:
Q  62 tgcttttgacactttcaatttcgtagcaccagaggttgttgaccttctacatagagttcaaagggtcatgcatagcaatgtcatgtc 148  Q
    ||||||||| ||||| || ||| ||||  ||||| |||||||| ||||||| | |||| ||| | ||||||||| ||||||||||||    
T  121776 tgcttttgaaacttttaacttcctagcctcagagattgttgacattctacacaaagtttaaaagatcatgcatatcaatgtcatgtc 121862  T

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Target: chr7 (Bit Score: 119; Significance: 2e-60; HSPs: 41)
Name: chr7
Description:

Target: chr7; HSP #1
Raw Score: 119; E-Value: 2e-60
Query Start/End: Original strand, 27 - 237
Target Start/End: Complemental strand, 19277378 - 19277168
Alignment:
Q  27 gtgttctgacaatcaacatatgcttttataacatctgcttttgacactttcaatttcgtagcaccagaggttgttgaccttctacatagagttcaaaggg 126  Q
    |||||||||||||||||||  ||||||||| ||| ||||||||||||||||  |||| ||||||||||||||||||||||||||||||||||||||| ||    
T  19277378 gtgttctgacaatcaacat--gcttttataccatttgcttttgacactttcggtttcctagcaccagaggttgttgaccttctacatagagttcaaaagg 19277281  T
Q  127 tcatgcatagcaatgtcatgtctcctaggtttatgaatgttgtg--cttgcgatgattggttttaccatccaaaaaggcctagcggcgcagcttgttgct 224  Q
    ||||||||||||||||||||||||||||||  ||||||||||||  |   |||  ||||||||| ||||||||||||| ||||||||||||||| ||||     
T  19277280 tcatgcatagcaatgtcatgtctcctaggtccatgaatgttgtgttcacacgaaaattggttttgccatccaaaaaggtctagcggcgcagcttattgcc 19277181  T
Q  225 cgcttgccttcta 237  Q
    ||| |||||||||    
T  19277180 cgcctgccttcta 19277168  T

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Target: chr7; HSP #2
Raw Score: 116; E-Value: 1e-58
Query Start/End: Original strand, 27 - 237
Target Start/End: Original strand, 21326860 - 21327068
Alignment:
Q  27 gtgttctgacaatcaacatatgcttttataacatctgcttttgacactttcaatttcgtagcaccagaggttgttgaccttctacatagagttcaaaggg 126  Q
    |||||||||||||||||||  ||||||||| ||| |||||||||||||||| ||||| |||||||||||| |||||||||| ||||||||||||||| ||    
T  21326860 gtgttctgacaatcaacat--gcttttataccatttgcttttgacactttcgatttcctagcaccagaggctgttgaccttttacatagagttcaaaagg 21326957  T
Q  127 tcatgcatagcaatgtcatgtctcctaggtttatgaatgttgtgcttgcgatgattggttttaccatccaaaaaggcctagcggcgcagcttgttgctcg 226  Q
    |||||||||||||||| |||||||||||||  |||||||||||| |  ||| ||||| |||| ||||||||||||| ||| |||||||||||||||   |    
T  21326958 tcatgcatagcaatgttatgtctcctaggtccatgaatgttgtgttcacgaggattgattttgccatccaaaaaggtctaacggcgcagcttgttgtctg 21327057  T
Q  227 cttgccttcta 237  Q
    |||||||||||    
T  21327058 cttgccttcta 21327068  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #3
Raw Score: 100; E-Value: 4e-49
Query Start/End: Original strand, 27 - 221
Target Start/End: Complemental strand, 24527674 - 24527482
Alignment:
Q  27 gtgttctgacaatcaacatatgcttttataacatctgcttttgacactttcaatttcgtagcaccagaggttgttgaccttctacatagagttcaaaggg 126  Q
    |||||||||||||||||||  ||||||||| ||| ||||||||||||||||| |||| |||||| |||||  ||||||||||||||||||||||||| ||    
T  24527674 gtgttctgacaatcaacat--gcttttataccatttgcttttgacactttcagtttcctagcacgagaggcggttgaccttctacatagagttcaaaagg 24527577  T
Q  127 tcatgcatagcaatgtcatgtctcctaggtttatgaatgttgtgcttgcgatgattggttttaccatccaaaaaggcctagcggcgcagcttgtt 221  Q
    ||||||||||||||||||| |||||| |||  |||||||||||  |  ||| ||||||||||  |||||||||||  ||||||||||||||||||    
T  24527576 tcatgcatagcaatgtcatttctccttggtccatgaatgttgtattcacgaggattggttttgtcatccaaaaagatctagcggcgcagcttgtt 24527482  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #4
Raw Score: 96; E-Value: 9e-47
Query Start/End: Original strand, 27 - 237
Target Start/End: Complemental strand, 983034 - 982826
Alignment:
Q  27 gtgttctgacaatcaacatatgcttttataacatctgcttttgacactttcaatttcgtagcaccagaggttgttgaccttctacatagagttcaaaggg 126  Q
    |||||||||||||||||||  ||||||||| ||| ||||||||| ||||||  |||  |||||||||||||||||| |||||||||||||||||||| ||    
T  983034 gtgttctgacaatcaacat--gcttttataccatttgcttttgatactttcggttttctagcaccagaggttgttggccttctacatagagttcaaaagg 982937  T
Q  127 tcatgcatagcaatgtcatgtctcctaggtttatgaatgttgtgcttgcgatgattggttttaccatccaaaaaggcctagcggcgcagcttgttgctcg 226  Q
    ||||||||| ||||||||||||| ||| ||  |||||||||||| |  ||| ||||||| || ||||||||||||| |||||| | |||||||||||  |    
T  982936 tcatgcatatcaatgtcatgtcttctatgtccatgaatgttgtgttcacgaggattggtattgccatccaaaaaggtctagcgacacagcttgttgcctg 982837  T
Q  227 cttgccttcta 237  Q
     ||||||||||    
T  982836 tttgccttcta 982826  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #5
Raw Score: 96; E-Value: 9e-47
Query Start/End: Original strand, 27 - 237
Target Start/End: Original strand, 45613864 - 45614072
Alignment:
Q  27 gtgttctgacaatcaacatatgcttttataacatctgcttttgacactttcaatttcgtagcaccagaggttgttgaccttctacatagagttcaaaggg 126  Q
    ||||||||||||||||||| |  ||||||| ||| || |||||||||||||  ||||  ||||||||||| ||||  |||||||||||||||||||| |     
T  45613864 gtgttctgacaatcaacatgt--ttttataccatttgattttgacactttcggtttccaagcaccagaggctgttagccttctacatagagttcaaaagt 45613961  T
Q  127 tcatgcatagcaatgtcatgtctcctaggtttatgaatgttgtgcttgcgatgattggttttaccatccaaaaaggcctagcggcgcagcttgttgctcg 226  Q
    ||||||||| ||||||||  ||||||||||  |||||||||||| || ||| |||||||||| |||||| |||||| |||||||||||||||||||  ||    
T  45613962 tcatgcataacaatgtcaaatctcctaggtccatgaatgttgtgtttacgaggattggttttgccatccgaaaaggtctagcggcgcagcttgttgtccg 45614061  T
Q  227 cttgccttcta 237  Q
    |||||||||||    
T  45614062 cttgccttcta 45614072  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #6
Raw Score: 93; E-Value: 5e-45
Query Start/End: Original strand, 27 - 234
Target Start/End: Complemental strand, 4501343 - 4501139
Alignment:
Q  27 gtgttctgacaatcaacatatgcttttataacatctgcttttgacactttcaatttcgtagcaccagaggttgttgaccttctacatagagttcaaaggg 126  Q
    |||||||||||||||||||  |||||||||  || |||||||||||||||   |||| ||||||||||||||||||||||||||||||||||||||| |     
T  4501343 gtgttctgacaatcaacat--gcttttatataatttgcttttgacactttggttttc-tagcaccagaggttgttgaccttctacatagagttcaaaagt 4501247  T
Q  127 tcatgcatagcaatgtcatgtctcctaggtttatgaatgttgtgcttgcgatgattggttttaccatccaaaaaggcctagcggcgcagcttgttgctcg 226  Q
    |||||||||||||||||||||||||||| || |||||||||||| || ||| |||| | |||  |||| ||||||| ||||| ||||| ||| |||  ||    
T  4501246 tcatgcatagcaatgtcatgtctcctagattcatgaatgttgtgtttacgaggattagctttgtcatctaaaaaggtctagcagcgcatcttattgtccg 4501147  T
Q  227 cttgcctt 234  Q
    ||||||||    
T  4501146 cttgcctt 4501139  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #7
Raw Score: 91; E-Value: 8e-44
Query Start/End: Original strand, 32 - 201
Target Start/End: Complemental strand, 48539261 - 48539094
Alignment:
Q  32 ctgacaatcaacatatgcttttataacatctgcttttgacactttcaatttcgtagcaccagaggttgttgaccttctacatagagttcaaagggtcatg 131  Q
    ||||||||||||||  ||||||||| ||| ||||||||||||||||  |||  |||||||||||| |||||| | |||||||||||| |||| |||||||    
T  48539261 ctgacaatcaacat--gcttttataccatttgcttttgacactttcggttttctagcaccagaggctgttgatcgtctacatagagtccaaaaggtcatg 48539164  T
Q  132 catagcaatgtcatgtctcctaggtttatgaatgttgtgcttgcgatgattggttttaccatccaaaaag 201  Q
    |||||||||||||||||||||||||  |||||||||||| || ||| |||||||||| ||||||||||||    
T  48539163 catagcaatgtcatgtctcctaggtccatgaatgttgtgtttacgaggattggttttgccatccaaaaag 48539094  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #8
Raw Score: 90; E-Value: 3e-43
Query Start/End: Original strand, 92 - 237
Target Start/End: Original strand, 25187016 - 25187161
Alignment:
Q  92 agaggttgttgaccttctacatagagttcaaagggtcatgcatagcaatgtcatgtctcctaggtttatgaatgttgtgcttgcgatgattggttttacc 191  Q
    ||||||||||||||||||| |||||||||||| |||||||||||||||||||||||||||||| |  |||||||||||| |  | ||||||| |||||||    
T  25187016 agaggttgttgaccttctatatagagttcaaaaggtcatgcatagcaatgtcatgtctcctagatccatgaatgttgtgttcccaatgattgattttacc 25187115  T
Q  192 atccaaaaaggcctagcggcgcagcttgttgctcgcttgccttcta 237  Q
    ||| ||||||  |||||||||||||||||||| |||||||||||||    
T  25187116 atctaaaaagatctagcggcgcagcttgttgcccgcttgccttcta 25187161  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #9
Raw Score: 89; E-Value: 1e-42
Query Start/End: Original strand, 22 - 221
Target Start/End: Complemental strand, 5825363 - 5825166
Alignment:
Q  22 aatgggtgttctgacaatcaacatatgcttttataacatctgcttttgacactttcaatttcgtagcaccagaggttgttgaccttctacatagagttca 121  Q
    |||| ||||| ||||||||||||| |  ||||||| ||| | ||||||||||||||    || ||||||||||||||||||||||||||||||||||  |    
T  5825363 aatgcgtgttatgacaatcaacatgt--ttttataccatttacttttgacactttcggcatcctagcaccagaggttgttgaccttctacatagagtcga 5825266  T
Q  122 aagggtcatgcatagcaatgtcatgtctcctaggtttatgaatgttgtgcttgcgatgattggttttaccatccaaaaaggcctagcggcgcagcttgtt 221  Q
    |||||| |||||||||||||| ||||||||||||| |||| |||||||| || ||| |||||||||| ||||| ||||||| ||  ||||||||||||||    
T  5825265 aagggttatgcatagcaatgttatgtctcctaggtctatggatgttgtgtttacgaggattggttttgccatcgaaaaaggtcttacggcgcagcttgtt 5825166  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #10
Raw Score: 85; E-Value: 3e-40
Query Start/End: Original strand, 27 - 237
Target Start/End: Complemental strand, 32584686 - 32584477
Alignment:
Q  27 gtgttctgacaatcaacatatgcttttataacatctgcttttgacactttcaatttcgtagcaccagaggttgttgaccttctacatagagttc-aaagg 125  Q
    |||||||||||||||| ||  ||||||| | ||| |||||||||||||||   |||| |||||||||||||||||||||||||| ||||||||| ||| |    
T  32584686 gtgttctgacaatcaagat--gcttttacaccatttgcttttgacactttatgtttcctagcaccagaggttgttgaccttctagatagagttccaaaag 32584589  T
Q  126 gtcatgcatagcaatgtcatgtctcctaggtttatgaatgttgtgcttgcgatgattggttttaccatccaaaaaggcctagcggcgcagcttgttgctc 225  Q
     ||||||||| |||||| ||||||| ||| |  |||||||||||| || | | ||||| |||||||||||||||||||||||| ||||| ||||| || |    
T  32584588 atcatgcatatcaatgttatgtctcatagatcgatgaatgttgtgtttacaaagattgattttaccatccaaaaaggcctagcagcgcaacttgtcgccc 32584489  T
Q  226 gcttgccttcta 237  Q
    |||||| |||||    
T  32584488 gcttgctttcta 32584477  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #11
Raw Score: 84; E-Value: 1e-39
Query Start/End: Original strand, 50 - 237
Target Start/End: Complemental strand, 22198050 - 22197864
Alignment:
Q  50 ttttataacatctgcttttgacactttcaatttcgtagcaccagaggttgttgaccttctacatagagttcaaagggtcatgcatagcaatgtcatgtct 149  Q
    ||||||| ||| |||||||| |||||||  |||| ||||| ||||||||||||||||||||||||||||||||| ||| ||| ||||||| |||||||||    
T  22198050 ttttataccatttgcttttgtcactttcggtttcctagcatcagaggttgttgaccttctacatagagttcaaaaggttatg-atagcaacgtcatgtct 22197952  T
Q  150 cctaggtttatgaatgttgtgcttgcgatgattggttttaccatccaaaaaggcctagcggcgcagcttgttgctcgcttgccttcta 237  Q
    |||||||  |||||||||||| || |||| |||| ||||  ||||||||||||| | |||| ||| |||||||| |||||| ||||||    
T  22197951 cctaggtcaatgaatgttgtgtttacgataattgattttgtcatccaaaaaggcttggcggtgcaacttgttgcccgcttgtcttcta 22197864  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #12
Raw Score: 84; E-Value: 1e-39
Query Start/End: Original strand, 50 - 237
Target Start/End: Original strand, 22239771 - 22239957
Alignment:
Q  50 ttttataacatctgcttttgacactttcaatttcgtagcaccagaggttgttgaccttctacatagagttcaaagggtcatgcatagcaatgtcatgtct 149  Q
    ||||||| ||| |||||||| |||||||  |||| ||||| ||||||||||||||||||||||||||||||||| ||| ||| ||||||| |||||||||    
T  22239771 ttttataccatttgcttttgtcactttcggtttcctagcatcagaggttgttgaccttctacatagagttcaaaaggttatg-atagcaacgtcatgtct 22239869  T
Q  150 cctaggtttatgaatgttgtgcttgcgatgattggttttaccatccaaaaaggcctagcggcgcagcttgttgctcgcttgccttcta 237  Q
    |||||||  |||||||||||| || |||| |||| ||||  ||||||||||||| | |||| ||| |||||||| |||||| ||||||    
T  22239870 cctaggtcaatgaatgttgtgtttacgataattgattttgtcatccaaaaaggcttggcggtgcaacttgttgcccgcttgtcttcta 22239957  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #13
Raw Score: 83; E-Value: 5e-39
Query Start/End: Original strand, 27 - 200
Target Start/End: Complemental strand, 27521556 - 27521385
Alignment:
Q  27 gtgttctgacaatcaacatatgcttttataacatctgcttttgacactttcaatttcgtagcaccagaggttgttgaccttctacatagagttcaaaggg 126  Q
    |||||||||||||||||||  || ||||||  || | |||||||||||||   |||| ||||| ||||||||||||||||||||||||||||||||| ||    
T  27521556 gtgttctgacaatcaacat--gcatttatacaatttacttttgacacttttggtttcctagcatcagaggttgttgaccttctacatagagttcaaaagg 27521459  T
Q  127 tcatgcatagcaatgtcatgtctcctaggtttatgaatgttgtgcttgcgatgattggttttaccatccaaaaa 200  Q
    ||||||||| ||||||||||||||||| || ||||||||||||| || ||| ||||| |||| ||||| |||||    
T  27521458 tcatgcataacaatgtcatgtctcctaagtctatgaatgttgtgtttacgaggattgattttgccatcgaaaaa 27521385  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #14
Raw Score: 80; E-Value: 3e-37
Query Start/End: Original strand, 27 - 233
Target Start/End: Original strand, 40726502 - 40726706
Alignment:
Q  27 gtgttctgacaatcaacatatgcttttataacatctgcttttgacactttcaatttcgtagcaccagaggttgttgaccttctacatagagttcaaaggg 126  Q
    ||||||||||||||||||| |  ||||||| ||| || |||||||||||||   ||| ||||| |||||||||||||||||||||||||||| |||||||    
T  40726502 gtgttctgacaatcaacatgt--ttttataccatttgtttttgacactttcggcttcatagcatcagaggttgttgaccttctacatagagtccaaaggg 40726599  T
Q  127 tcatgcatagcaatgtcatgtctcctaggtttatgaatgttgtgcttgcgatgattggttttaccatccaaaaaggcctagcggcgcagcttgttgctcg 226  Q
    | ||||||| |||||  ||||||||||| |  |||||||||||| ||  || ||||| |||| ||||||||||| | ||| |  ||||||||||||| ||    
T  40726600 ttatgcataacaatgctatgtctcctagatccatgaatgttgtgtttatgaggattgattttgccatccaaaaatgtctaacatcgcagcttgttgcccg 40726699  T
Q  227 cttgcct 233  Q
    |||||||    
T  40726700 cttgcct 40726706  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #15
Raw Score: 75; E-Value: 3e-34
Query Start/End: Original strand, 34 - 223
Target Start/End: Original strand, 28517316 - 28517503
Alignment:
Q  34 gacaatcaacatatgcttttataacatctgcttttgacactttcaatttcgtagcaccagaggttgttgaccttctacatagagttcaaagggtcatgca 133  Q
    |||||||||||| |  ||||||| ||| |||||||||||||||  | ||| ||||| |||||   |||||||||||||||||||| |||||||| |||||    
T  28517316 gacaatcaacatgt--ttttataccatttgcttttgacacttttgacttcctagcatcagagacagttgaccttctacatagagtccaaagggttatgca 28517413  T
Q  134 tagcaatgtcatgtctcctaggtttatgaatgttgtgcttgcgatgattggttttaccatccaaaaaggcctagcggcgcagcttgttgc 223  Q
    || |||||| |||||||||| ||  |||||||||||| || ||| |||||||||| ||||||||||| | |||||| | |||||||||||    
T  28517414 taacaatgttatgtctcctaagtccatgaatgttgtgtttacgaggattggttttgccatccaaaaaagtctagcgacacagcttgttgc 28517503  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #16
Raw Score: 73; E-Value: 5e-33
Query Start/End: Original strand, 27 - 170
Target Start/End: Original strand, 30216080 - 30216221
Alignment:
Q  27 gtgttctgacaatcaacatatgcttttataacatctgcttttgacactttcaatttcgtagcaccagaggttgttgaccttctacatagagttcaaaggg 126  Q
    ||||| ||||||||||||| |  ||||||| ||| ||||||||||||||||  |||| ||||| ||||| ||||||| |||| ||||| |||||||| ||    
T  30216080 gtgttttgacaatcaacatgt--ttttataccatttgcttttgacactttcggtttcctagcatcagagtttgttgatcttccacataaagttcaaatgg 30216177  T
Q  127 tcatgcatagcaatgtcatgtctcctaggtttatgaatgttgtg 170  Q
    ||||||||||||||||||| |||||||||| |||||||||||||    
T  30216178 tcatgcatagcaatgtcatatctcctaggtctatgaatgttgtg 30216221  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #17
Raw Score: 72; E-Value: 2e-32
Query Start/End: Original strand, 27 - 221
Target Start/End: Complemental strand, 10905202 - 10905011
Alignment:
Q  27 gtgttctgacaatcaacatatgcttttataacatctgcttttgacactttcaatttcgtagcaccagaggttgttgaccttctacatagagttcaaaggg 126  Q
    ||||||||||| |||||||  ||||| ||| ||| |||||||||||||||   || | |||||||||||  ||||||||||||||||||||||||||| |    
T  10905202 gtgttctgacactcaacat--gcttt-ataccatttgcttttgacacttttggttgcctagcaccagagtatgttgaccttctacatagagttcaaagag 10905106  T
Q  127 tcatgcatagcaatgtcatgtctcctaggtttatgaatgttgtgcttgcgatgattggttttaccatccaaaaaggcctagcggcgcagcttgtt 221  Q
     |||||||| ||||||||||||||||||||  |||||||| ||| || | | ||||| | | ||||||||||||| |||||  ||||||||||||    
T  10905105 ccatgcataacaatgtcatgtctcctaggtccatgaatgtcgtgtttacaaggattgatctgaccatccaaaaagacctagtagcgcagcttgtt 10905011  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #18
Raw Score: 67; E-Value: 2e-29
Query Start/End: Original strand, 52 - 206
Target Start/End: Original strand, 5972261 - 5972415
Alignment:
Q  52 ttataacatctgcttttgacactttcaatttcgtagcaccagaggttgttgaccttctacatagagttcaaagggtcatgcatagcaatgtcatgtctcc 151  Q
    ||||| ||| || |||||||| ||||| |||  ||| | |||||||||||||||||||||||||||||||||  ||||||||||| |||||||| |||||    
T  5972261 ttataccatttgtttttgacattttcatttttctagtatcagaggttgttgaccttctacatagagttcaaaatgtcatgcatagtaatgtcatttctcc 5972360  T
Q  152 taggtttatgaatgttgtgcttgcgatgattggttttaccatccaaaaaggccta 206  Q
     || | ||||||||||||| || ||| |||| ||||| |||||||||||| ||||    
T  5972361 cagatctatgaatgttgtgtttacgaggattagttttgccatccaaaaagaccta 5972415  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #19
Raw Score: 67; E-Value: 2e-29
Query Start/End: Original strand, 27 - 200
Target Start/End: Complemental strand, 43856959 - 43856788
Alignment:
Q  27 gtgttctgacaatcaacatatgcttttataacatctgcttttgacactttcaatttcgtagcaccagaggttgttgaccttctacatagagttcaaaggg 126  Q
    ||||| |||||||||||||  || ||||||  || ||||||||||| |||   |||| || |||||||||||||||||||||||||||||||||||||||    
T  43856959 gtgttttgacaatcaacat--gcgtttatacaatttgcttttgacatttttggtttcctaacaccagaggttgttgaccttctacatagagttcaaaggg 43856862  T
Q  127 tcatgcatagcaatgtcatgtctcctaggtttatgaatgttgtgcttgcgatgattggttttaccatccaaaaa 200  Q
    ||||||| | |||||||||| |||||||||  ||||||||| || || |||  |||| |||| | |||||||||    
T  43856861 tcatgcacaacaatgtcatgactcctaggtccatgaatgttatgtttacgagaattgattttgctatccaaaaa 43856788  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #20
Raw Score: 63; E-Value: 4e-27
Query Start/End: Original strand, 70 - 223
Target Start/End: Original strand, 41117833 - 41117987
Alignment:
Q  70 acactttcaatttcgtagcaccagaggttgttgaccttctacatagagttcaaagggtcatgcatagcaatgtcatgtctcctaggtttatgaatgttgt 169  Q
    ||||||||  |||| || ||||||| |||||| ||||||||||||||||| ||| | ||||||||||||||||||||| ||||||||  |||||||||||    
T  41117833 acactttcggtttcctaacaccagatgttgttaaccttctacatagagtttaaaagatcatgcatagcaatgtcatgtttcctaggtccatgaatgttgt 41117932  T
Q  170 gcttgcgatgattggttttaccatccaaaaaggcctagcggcgca-gcttgttgc 223  Q
    | |  ||||||||| |||| | ||||||||| | | ||||||||| |||||||||    
T  41117933 gttcacgatgattgattttgctatccaaaaaagtccagcggcgcaggcttgttgc 41117987  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #21
Raw Score: 61; E-Value: 7e-26
Query Start/End: Original strand, 44 - 200
Target Start/End: Complemental strand, 34772851 - 34772696
Alignment:
Q  44 atatgcttttataacatctgcttttgacactttcaatttcgtagcaccagaggttgttgaccttctacatagagttcaaagggtcatgcatagcaatgtc 143  Q
    ||||| ||||||| ||| ||||||||| |||||||||||| ||| |  ||||||||||||||||||||||| | ||||||  |||||||||| |||||||    
T  34772851 atatgtttttataccatttgcttttgaaactttcaatttcttag-attagaggttgttgaccttctacataaacttcaaaaagtcatgcatatcaatgtc 34772753  T
Q  144 atgtctcctaggtttatgaatgttgtgcttgcgatgattggttttaccatccaaaaa 200  Q
    |||| | ||||||  |||||| ||||| || |||| ||||||||| |||| ||||||    
T  34772752 atgttttctaggtccatgaatattgtgtttacgataattggttttgccattcaaaaa 34772696  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #22
Raw Score: 59; E-Value: 1e-24
Query Start/End: Original strand, 64 - 202
Target Start/End: Complemental strand, 23037594 - 23037457
Alignment:
Q  64 cttttgacactttcaatttcgtagcaccagaggttgttgaccttctacatagagttcaaagggtcatgcatagcaatgtcatgtctcctaggtttatgaa 163  Q
    ||||||||||||| |||||| || |  ||||||||||||||| ||||| ||| ||||||||||| ||||||||||||||||| |||| ||||| ||||||    
T  23037594 cttttgacacttttaatttc-taacgtcagaggttgttgaccatctacgtagggttcaaagggttatgcatagcaatgtcatttctcttaggtctatgaa 23037496  T
Q  164 tgttgtgcttgcgatgattggttttaccatccaaaaagg 202  Q
    | ||||| || ||| ||||| |||| ||||| |||||||    
T  23037495 ttttgtgtttacgaggattgattttgccatctaaaaagg 23037457  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #23
Raw Score: 57; E-Value: 2e-23
Query Start/End: Original strand, 30 - 201
Target Start/End: Original strand, 42295209 - 42295378
Alignment:
Q  30 ttctgacaatcaacatatgcttttataacatctgcttttgacactttcaatttcgtagcaccagaggttgttgaccttctacatagagttcaaagggtca 129  Q
    |||||||||||||||| |  ||||||| ||| || |||| | ||||||  |||| || |||||| ||||||||||||||||||||| |||||||   |||    
T  42295209 ttctgacaatcaacatgt--ttttataccatttgttttttatactttcggtttcctaacaccaggggttgttgaccttctacatagcgttcaaaatatca 42295306  T
Q  130 tgcatagcaatgtcatgtctcctaggtttatgaatgttgtgcttgcgatgattggttttaccatccaaaaag 201  Q
    |||||| || |||||||||||||||||  |||||| ||||| || |||||||| |||||   ||||||||||    
T  42295307 tgcataacattgtcatgtctcctaggtccatgaatcttgtgtttacgatgattagttttgttatccaaaaag 42295378  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #24
Raw Score: 50; E-Value: 2e-19
Query Start/End: Original strand, 118 - 223
Target Start/End: Original strand, 43333941 - 43334046
Alignment:
Q  118 ttcaaagggtcatgcatagcaatgtcatgtctcctaggtttatgaatgttgtgcttgcgatgattggttttaccatccaaaaaggcctagcggcgcagct 217  Q
    |||||| ||||||||||| ||||| |||||||||||| | ||||||||||| | ||  ||||||||||||| |||| ||||||| | | |||||||||||    
T  43333941 ttcaaaaggtcatgcatatcaatgacatgtctcctagatctatgaatgttgagtttatgatgattggttttgccattcaaaaagacttggcggcgcagct 43334040  T
Q  218 tgttgc 223  Q
    ||||||    
T  43334041 tgttgc 43334046  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #25
Raw Score: 50; E-Value: 2e-19
Query Start/End: Original strand, 120 - 233
Target Start/End: Original strand, 45003010 - 45003123
Alignment:
Q  120 caaagggtcatgcatagcaatgtcatgtctcctaggtttatgaatgttgtgcttgcgatgattggttttaccatccaaaaaggcctagcggcgcagcttg 219  Q
    ||||| || |||||||||||||| ||||||| ||||   |||||||||||| || ||| ||||| |||| ||||||||||||| |||||||||||||||     
T  45003010 caaagagttatgcatagcaatgttatgtctcataggaccatgaatgttgtgtttacgaagattgattttgccatccaaaaaggtctagcggcgcagctta 45003109  T
Q  220 ttgctcgcttgcct 233  Q
    |||  |||||||||    
T  45003110 ttgtccgcttgcct 45003123  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #26
Raw Score: 49; E-Value: 1e-18
Query Start/End: Original strand, 66 - 170
Target Start/End: Complemental strand, 23793060 - 23792956
Alignment:
Q  66 tttgacactttcaatttcgtagcaccagaggttgttgaccttctacatagagttcaaagggtcatgcatagcaatgtcatgtctcctaggtttatgaatg 165  Q
    |||||||||||   |||| |||||||| ||||||||||||||||| ||| |||||||||| |||| ||||| ||||| ||||||||||||| ||| |||     
T  23793060 tttgacacttttgttttcttagcaccacaggttgttgaccttctaaatacagttcaaaggatcatacatagtaatgtaatgtctcctaggtctataaatc 23792961  T
Q  166 ttgtg 170  Q
    |||||    
T  23792960 ttgtg 23792956  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #27
Raw Score: 45; E-Value: 2e-16
Query Start/End: Original strand, 35 - 154
Target Start/End: Original strand, 6634993 - 6635110
Alignment:
Q  35 acaatcaacatatgcttttataacatctgcttttgacactttcaatttcgtagcaccagaggttgttgaccttctacatagagttcaaagggtcatgcat 134  Q
    |||||||||||||  ||||||| ||| ||||||||||| |||| ||||  ||||| ||||||||||||||||||||| || | || |||   || |||||    
T  6634993 acaatcaacatat--ttttatatcatttgcttttgacagtttcgattttttagcatcagaggttgttgaccttctacgtaaaattaaaataatcttgcat 6635090  T
Q  135 agcaatgtcatgtctcctag 154  Q
    | ||||||||||||||||||    
T  6635091 aacaatgtcatgtctcctag 6635110  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #28
Raw Score: 43; E-Value: 0.000000000000004
Query Start/End: Original strand, 85 - 131
Target Start/End: Original strand, 9281209 - 9281255
Alignment:
Q  85 tagcaccagaggttgttgaccttctacatagagttcaaagggtcatg 131  Q
    |||||||||| ||||||||||||||||||||||||||||||||||||    
T  9281209 tagcaccagatgttgttgaccttctacatagagttcaaagggtcatg 9281255  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #29
Raw Score: 43; E-Value: 0.000000000000004
Query Start/End: Original strand, 85 - 131
Target Start/End: Original strand, 9292180 - 9292226
Alignment:
Q  85 tagcaccagaggttgttgaccttctacatagagttcaaagggtcatg 131  Q
    |||||||||| ||||||||||||||||||||||||||||||||||||    
T  9292180 tagcaccagatgttgttgaccttctacatagagttcaaagggtcatg 9292226  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #30
Raw Score: 43; E-Value: 0.000000000000004
Query Start/End: Original strand, 135 - 237
Target Start/End: Original strand, 27027758 - 27027860
Alignment:
Q  135 agcaatgtcatgtctcctaggtttatgaatgttgtgcttgcgatgattggttttaccatccaaaaaggcctagcggcgcagcttgttgctcgcttgcctt 234  Q
    ||||||||||||||||||||||  |||||||||||| |  ||| |||||||||| | ||||||||||  ||||||| | |||||||| | | ||||||||    
T  27027758 agcaatgtcatgtctcctaggtccatgaatgttgtgttcacgaggattggttttgctatccaaaaagatctagcggtgtagcttgttacccacttgcctt 27027857  T
Q  235 cta 237  Q
    |||    
T  27027858 cta 27027860  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #31
Raw Score: 42; E-Value: 0.00000000000001
Query Start/End: Original strand, 27 - 135
Target Start/End: Original strand, 10032193 - 10032299
Alignment:
Q  27 gtgttctgacaatcaacatatgcttttataacatctgcttttgacactttcaatttcgtagcaccagaggttgttgaccttctacatagagttcaaaggg 126  Q
    ||||||||||||||||  |||| |||||||  || ||||||||| | |||||  ||| |||||  ||| |||||| |||||||||||||||||||||||     
T  10032193 gtgttctgacaatcaa--tatgtttttatactatttgcttttgatattttcagcttcttagcattagatgttgttaaccttctacatagagttcaaagga 10032290  T
Q  127 tcatgcata 135  Q
    |||||||||    
T  10032291 tcatgcata 10032299  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #32
Raw Score: 40; E-Value: 0.0000000000002
Query Start/End: Original strand, 147 - 234
Target Start/End: Complemental strand, 29054816 - 29054729
Alignment:
Q  147 tctcctaggtttatgaatgttgtgcttgcgatgattggttttaccatccaaaaaggcctagcggcgcagcttgttgctcgcttgcctt 234  Q
    |||||||||| ||||||||| ||  ||  || |||||||||| ||||||| |||||  |||||||||||||| |||||||||||||||    
T  29054816 tctcctaggtctatgaatgtagtttttaagaggattggttttgccatccataaaggattagcggcgcagcttattgctcgcttgcctt 29054729  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #33
Raw Score: 38; E-Value: 0.000000000004
Query Start/End: Original strand, 180 - 233
Target Start/End: Complemental strand, 38766258 - 38766205
Alignment:
Q  180 attggttttaccatccaaaaaggcctagcggcgcagcttgttgctcgcttgcct 233  Q
    ||||||||| ||||||||||||| ||||| |||||||||||||| |||||||||    
T  38766258 attggttttgccatccaaaaaggtctagctgcgcagcttgttgcccgcttgcct 38766205  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #34
Raw Score: 35; E-Value: 0.0000000002
Query Start/End: Original strand, 85 - 135
Target Start/End: Original strand, 23890257 - 23890307
Alignment:
Q  85 tagcaccagaggttgttgaccttctacatagagttcaaagggtcatgcata 135  Q
    ||||||||||||||||||||||  ||||||||||||||||| |||| ||||    
T  23890257 tagcaccagaggttgttgacctcttacatagagttcaaaggatcatacata 23890307  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #35
Raw Score: 35; E-Value: 0.0000000002
Query Start/End: Original strand, 191 - 233
Target Start/End: Complemental strand, 38832225 - 38832183
Alignment:
Q  191 catccaaaaaggcctagcggcgcagcttgttgctcgcttgcct 233  Q
    |||||||||||| |||||||||||||||||||| |||||||||    
T  38832225 catccaaaaaggtctagcggcgcagcttgttgcccgcttgcct 38832183  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #36
Raw Score: 34; E-Value: 0.0000000009
Query Start/End: Original strand, 141 - 202
Target Start/End: Complemental strand, 2904353 - 2904292
Alignment:
Q  141 gtcatgtctcctaggtttatgaatgttgtgcttgcgatgattggttttaccatccaaaaagg 202  Q
    |||||| ||||||||| ||||||||||||| || |||| ||||||||| | |||||||||||    
T  2904353 gtcatgactcctaggtctatgaatgttgtgtttacgataattggttttgctatccaaaaagg 2904292  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #37
Raw Score: 34; E-Value: 0.0000000009
Query Start/End: Original strand, 127 - 200
Target Start/End: Complemental strand, 38839313 - 38839240
Alignment:
Q  127 tcatgcatagcaatgtcatgtctcctaggtttatgaatgttgtgcttgcgatgattggttttaccatccaaaaa 200  Q
    ||||||||| ||||||||||| |   ||||  |||||||||||| || ||| ||||||||||||||||||||||    
T  38839313 tcatgcataacaatgtcatgtttatcaggtccatgaatgttgtgtttacgaagattggttttaccatccaaaaa 38839240  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #38
Raw Score: 33; E-Value: 0.000000003
Query Start/End: Original strand, 98 - 170
Target Start/End: Complemental strand, 44526001 - 44525929
Alignment:
Q  98 tgttgaccttctacatagagttcaaagggtcatgcatagcaatgtcatgtctcctaggtttatgaatgttgtg 170  Q
    |||||||||||||||| ||||||||| |   ||||||| |||||||||||||||||  |  ||||||||||||    
T  44526001 tgttgaccttctacatggagttcaaaagaatatgcataacaatgtcatgtctcctatatccatgaatgttgtg 44525929  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #39
Raw Score: 31; E-Value: 0.00000005
Query Start/End: Original strand, 85 - 131
Target Start/End: Complemental strand, 2904394 - 2904348
Alignment:
Q  85 tagcaccagaggttgttgaccttctacatagagttcaaagggtcatg 131  Q
    |||||| |||||||||||||||||||| || |||| |||||||||||    
T  2904394 tagcactagaggttgttgaccttctacgtaaagtttaaagggtcatg 2904348  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #40
Raw Score: 29; E-Value: 0.0000008
Query Start/End: Original strand, 206 - 234
Target Start/End: Complemental strand, 21454678 - 21454650
Alignment:
Q  206 agcggcgcagcttgttgctcgcttgcctt 234  Q
    |||||||||||||||||||||||||||||    
T  21454678 agcggcgcagcttgttgctcgcttgcctt 21454650  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #41
Raw Score: 29; E-Value: 0.0000008
Query Start/End: Original strand, 85 - 201
Target Start/End: Original strand, 36558946 - 36559061
Alignment:
Q  85 tagcaccagaggttgttgaccttctacatagagttcaaagggtcatgcatagcaatgtcatgtctcctaggtttatgaatgttgtgcttgcgatgattgg 184  Q
    |||||||| | || |||||| |||| ||||||||| ||| |||||||||||  ||| ||||||||  |||||  |||||||||||| || |||||| ||     
T  36558946 tagcaccaaaagtcgttgactttctccatagagtt-aaatggtcatgcatataaatatcatgtcttataggtccatgaatgttgtgtttacgatgaatga 36559044  T
Q  185 ttttaccatccaaaaag 201  Q
    |||| | ||| ||||||    
T  36559045 ttttgctatctaaaaag 36559061  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: scaffold0009 (Bit Score: 116; Significance: 1e-58; HSPs: 1)
Name: scaffold0009
Description:

Target: scaffold0009; HSP #1
Raw Score: 116; E-Value: 1e-58
Query Start/End: Original strand, 31 - 237
Target Start/End: Complemental strand, 103187 - 102983
Alignment:
Q  31 tctgacaatcaacatatgcttttataacatctgcttttgacactttcaatttcgtagcaccagaggttgttgaccttctacatagagttcaaagggtcat 130  Q
    |||||||||||||||  ||||||||| ||| ||||||||||||||||  |||| |||||||||||| |||||||||||||||| ||| ||||| ||||||    
T  103187 tctgacaatcaacat--gcttttataccatttgcttttgacactttcggtttcctagcaccagaggctgttgaccttctacatcgagctcaaaaggtcat 103090  T
Q  131 gcatagcaatgtcatgtctcctaggtttatgaatgttgtgcttgcgatgattggttttaccatccaaaaaggcctagcggcgcagcttgttgctcgcttg 230  Q
    ||||| ||||||| ||||||||||||  |||||||||||| || ||| |||||||||| ||||||||||||| ||||||||||| |||||||| ||||||    
T  103089 gcataacaatgtcgtgtctcctaggtccatgaatgttgtgtttacgaggattggttttgccatccaaaaaggtctagcggcgcaacttgttgcccgcttg 102990  T
Q  231 ccttcta 237  Q
    |||||||    
T  102989 ccttcta 102983  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2 (Bit Score: 116; Significance: 1e-58; HSPs: 36)
Name: chr2
Description:

Target: chr2; HSP #1
Raw Score: 116; E-Value: 1e-58
Query Start/End: Original strand, 27 - 237
Target Start/End: Original strand, 4413088 - 4413296
Alignment:
Q  27 gtgttctgacaatcaacatatgcttttataacatctgcttttgacactttcaatttcgtagcaccagaggttgttgaccttctacatagagttcaaaggg 126  Q
    |||||||||||||||||||  ||||||||| ||| ||||||||||||||||  |||| ||||||||||| ||||||||||||||||||| ||||||| ||    
T  4413088 gtgttctgacaatcaacat--gcttttataccatttgcttttgacactttcggtttcctagcaccagagattgttgaccttctacatagggttcaaaagg 4413185  T
Q  127 tcatgcatagcaatgtcatgtctcctaggtttatgaatgttgtgcttgcgatgattggttttaccatccaaaaaggcctagcggcgcagcttgttgctcg 226  Q
    ||||||||||||| ||||||||||||||||  |||||||||||| |   || ||||| |||| ||||||||||||| |||||||||||||||||||| |     
T  4413186 tcatgcatagcaaagtcatgtctcctaggtccatgaatgttgtgttcatgaggattgattttgccatccaaaaaggtctagcggcgcagcttgttgccca 4413285  T
Q  227 cttgccttcta 237  Q
    |||||||||||    
T  4413286 cttgccttcta 4413296  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #2
Raw Score: 112; E-Value: 2e-56
Query Start/End: Original strand, 46 - 237
Target Start/End: Complemental strand, 17344706 - 17344515
Alignment:
Q  46 atgcttttataacatctgcttttgacactttcaatttcgtagcaccagaggttgttgaccttctacatagagttcaaagggtcatgcatagcaatgtcat 145  Q
    ||||||||||| ||| ||||||||||||||||| |||| |||||||| ||| |||||||||||||||||||||||||| ||||||||||| |||||||||    
T  17344706 atgcttttataccatttgcttttgacactttcagtttcctagcaccataggctgttgaccttctacatagagttcaaaaggtcatgcataacaatgtcat 17344607  T
Q  146 gtctcctaggtttatgaatgttgtgcttgcgatgattggttttaccatccaaaaaggcctagcggcgcagcttgttgctcgcttgccttcta 237  Q
    |||||||||||  |||||||||||| || ||| ||||| |||| | ||||||||||| ||| ||||||||||||||||  ||||||||||||    
T  17344606 gtctcctaggtccatgaatgttgtgtttacgaggattgatttttcgatccaaaaaggtctatcggcgcagcttgttgccggcttgccttcta 17344515  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #3
Raw Score: 108; E-Value: 6e-54
Query Start/End: Original strand, 27 - 237
Target Start/End: Original strand, 18744976 - 18745184
Alignment:
Q  27 gtgttctgacaatcaacatatgcttttataacatctgcttttgacactttcaatttcgtagcaccagaggttgttgaccttctacatagagttcaaaggg 126  Q
    ||||||||||||||||||||  |||||||| ||| ||||||||||| |||| ||||  |||||||| ||| ||||| |||||||||||||||||||| |     
T  18744976 gtgttctgacaatcaacata--cttttataccatttgcttttgacattttcgattttctagcaccataggctgttggccttctacatagagttcaaaaga 18745073  T
Q  127 tcatgcatagcaatgtcatgtctcctaggtttatgaatgttgtgcttgcgatgattggttttaccatccaaaaaggcctagcggcgcagcttgttgctcg 226  Q
    ||||||||||||||||||| | |||||||| ||||||||||||| ||   | |||||||||| ||||||||||||| ||||||||||||||| |||||||    
T  18745074 tcatgcatagcaatgtcatatttcctaggtctatgaatgttgtgtttataaggattggttttgccatccaaaaaggtctagcggcgcagcttattgctcg 18745173  T
Q  227 cttgccttcta 237  Q
    |||| ||||||    
T  18745174 cttgtcttcta 18745184  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #4
Raw Score: 107; E-Value: 2e-53
Query Start/End: Original strand, 28 - 237
Target Start/End: Original strand, 41867931 - 41868137
Alignment:
Q  28 tgttctgacaatcaacatatgcttttataacatctgcttttgacactttcaatttcgtagcaccagaggttgttgaccttctacatagagttcaaagggt 127  Q
    ||||||||||||||||||  ||||||||| ||| ||||||||||||||||   ||| |||||||||||| |||||||||||||||||||||||||| |||    
T  41867931 tgttctgacaatcaacat--gcttttataccatttgcttttgacactttcgggttcctagcaccagaggctgttgaccttctacatagagttcaaaaggt 41868028  T
Q  128 catgcatagcaatgtcatgtctcctaggtttatgaatgttgtgcttgcgatgattggttttaccatccaaaaaggcctagcggcgcagcttgttgctcgc 227  Q
    |||||||| ||||||||||||||| ||||  |||||||||||| || ||| |||||||||| ||| ||||||||  ||||||||||| |||||||| |||    
T  41868029 catgcataacaatgtcatgtctcccaggtccatgaatgttgtgtttacgaggattggttttgcca-ccaaaaagatctagcggcgcaacttgttgcccgc 41868127  T
Q  228 ttgccttcta 237  Q
    |||| |||||    
T  41868128 ttgctttcta 41868137  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #5
Raw Score: 105; E-Value: 4e-52
Query Start/End: Original strand, 27 - 234
Target Start/End: Original strand, 9685437 - 9685642
Alignment:
Q  27 gtgttctgacaatcaacatatgcttttataacatctgcttttgacactttcaatttcgtagcaccagaggttgttgaccttctacatagagttcaaaggg 126  Q
    |||||||||||||||||||  ||||||||| ||| |||||||||||||||  ||||  |||||| ||||| ||| ||||||||| |||||||||||| ||    
T  9685437 gtgttctgacaatcaacat--gcttttataccatttgcttttgacacttttgattttctagcactagaggctgtggaccttctatatagagttcaaaagg 9685534  T
Q  127 tcatgcatagcaatgtcatgtctcctaggtttatgaatgttgtgcttgcgatgattggttttaccatccaaaaaggcctagcggcgcagcttgttgctcg 226  Q
    ||||| ||||||||||||||||||||||||  |||||||||||| |  | | ||||| |||| ||||||||||||| |||||||||||||||||||| ||    
T  9685535 tcatggatagcaatgtcatgtctcctaggtccatgaatgttgtgttcacaaagattgtttttgccatccaaaaaggtctagcggcgcagcttgttgcccg 9685634  T
Q  227 cttgcctt 234  Q
    ||||||||    
T  9685635 cttgcctt 9685642  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #6
Raw Score: 86; E-Value: 8e-41
Query Start/End: Original strand, 30 - 230
Target Start/End: Complemental strand, 28225082 - 28224884
Alignment:
Q  30 ttctgacaatcaacatatgcttttataacatctgcttttgacactttcaatttcgtagcaccagaggttgttgaccttctacatagagttcaaagggtca 129  Q
    ||||||||||||||||  ||||||||| ||| ||||||||||||||||   ||| ||||  |||||||||||||||||||||||||||| |||||| | |    
T  28225082 ttctgacaatcaacat--gcttttataccatttgcttttgacactttcggcttcctagcttcagaggttgttgaccttctacatagagtccaaaggatta 28224985  T
Q  130 tgcatagcaatgtcatgtctcctaggtttatgaatgttgtgcttgcgatgattggttttaccatccaaaaaggcctagcggcgcagcttgttgctcgctt 229  Q
    |||||  |||| | |||||||||||||  |||||||||||| ||  || |||| ||||| ||||||||||||| ||||||||||||||| |||| |||||    
T  28224984 tgcatgacaatattatgtctcctaggtcaatgaatgttgtgtttatgaagatttgttttgccatccaaaaaggtctagcggcgcagcttattgcccgctt 28224885  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #7
Raw Score: 85; E-Value: 3e-40
Query Start/End: Original strand, 65 - 237
Target Start/End: Complemental strand, 13413400 - 13413228
Alignment:
Q  65 ttttgacactttcaatttcgtagcaccagaggttgttgaccttctacatagagttcaaagggtcatgcatagcaatgtcatgtctcctaggtttatgaat 164  Q
    |||||||||||||  |||   |||| |||||| |||||||||||||||||||||||||| ||||||||||| ||||||||||||||||||||  ||||||    
T  13413400 ttttgacactttcggttttcaagcagcagaggctgttgaccttctacatagagttcaaaaggtcatgcataacaatgtcatgtctcctaggtccatgaat 13413301  T
Q  165 gttgtgcttgcgatgattggttttaccatccaaaaaggcctagcggcgcagcttgttgctcgcttgccttcta 237  Q
    |||||| ||  ||  ||||||||| ||||||||||||||||| |||| ||||||||||  |||||| ||||||    
T  13413300 gttgtgtttatgagaattggttttgccatccaaaaaggcctaacggctcagcttgttgtccgcttgtcttcta 13413228  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #8
Raw Score: 76; E-Value: 7e-35
Query Start/End: Original strand, 27 - 237
Target Start/End: Original strand, 19161805 - 19162013
Alignment:
Q  27 gtgttctgacaatcaacatatgcttttataacatctgcttttgacactttcaatttcgtagcaccagaggttgttgaccttctacatagagttcaaaggg 126  Q
    ||||||||||||||||||| |  ||||||| ||| ||||||||||||||||  ||| ||| ||| ||||| || | ||||| ||||||||||||||| ||    
T  19161805 gtgttctgacaatcaacatgt--ttttataccatttgcttttgacactttcggttttgtaacactagaggctgcttaccttttacatagagttcaaaagg 19161902  T
Q  127 tcatgcatagcaatgtcatgtctcctaggtttatgaatgttgtgcttgcgatgattggttttaccatccaaaaaggcctagcggcgcagcttgttgctcg 226  Q
    ||||||||| ||||||||||||||||||||  ||||||  |||| || ||| ||||| ||||  ||||||||||| | ||| ||||||||||| ||  ||    
T  19161903 tcatgcatatcaatgtcatgtctcctaggtcaatgaatagtgtgttttcgaggattgattttgtcatccaaaaagacgtagtggcgcagcttgctgtccg 19162002  T
Q  227 cttgccttcta 237  Q
    ||||| |||||    
T  19162003 cttgctttcta 19162013  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #9
Raw Score: 68; E-Value: 4e-30
Query Start/End: Original strand, 88 - 223
Target Start/End: Original strand, 7760926 - 7761061
Alignment:
Q  88 caccagaggttgttgaccttctacatagagttcaaagggtcatgcatagcaatgtcatgtctcctaggtttatgaatgttgtgcttgcgatgattggttt 187  Q
    |||||||||||||||||||||||||||||||||||||| |||||| ||||||||| ||||||| || ||| | ||||| ||||||| |||  |||| |||    
T  7760926 caccagaggttgttgaccttctacatagagttcaaaggatcatgcgtagcaatgtgatgtctcataagttcaagaatgatgtgcttacgaaaattgattt 7761025  T
Q  188 taccatccaaaaaggcctagcggcgcagcttgttgc 223  Q
    |  ||||||||||||| |||||||||| ||| ||||    
T  7761026 tgacatccaaaaaggcttagcggcgcaacttattgc 7761061  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #10
Raw Score: 64; E-Value: 1e-27
Query Start/End: Original strand, 27 - 221
Target Start/End: Complemental strand, 5532504 - 5532314
Alignment:
Q  27 gtgttctgacaatcaacatatgcttttataacatctgcttttgacactttcaatttcgtagcaccagaggttgttgaccttctacatagagttcaaaggg 126  Q
    ||||| |||||||||||||  |||||||||  || | ||||||||||||| |  ||| |||||||| |||||||||| ||||||||||||||||||||||    
T  5532504 gtgttgtgacaatcaacat--gcttttatactatttacttttgacacttt-agcttcctagcaccataggttgttgagcttctacatagagttcaaaggg 5532408  T
Q  127 tcatgcatagcaatgtcatgtctcctaggtttatgaatgttgtgcttgcgatgattggttttaccatccaaaaaggcctagcggcgcagcttgtt 221  Q
    ||||||| | ||||| |||| |||||| ||| ||||||| |||| || | | ||||| ||||  ||||||||| |||||| ||||||| ||||||    
T  5532407 tcatgcacaacaatgccatgactcctaagttcatgaatg-tgtgtttacaaggattgattttctcatccaaaacggcctaacggcgcaacttgtt 5532314  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #11
Raw Score: 59; E-Value: 1e-24
Query Start/End: Original strand, 65 - 207
Target Start/End: Complemental strand, 27502411 - 27502269
Alignment:
Q  65 ttttgacactttcaatttcgtagcaccagaggttgttgaccttctacatagagttcaaagggtcatgcatagcaatgtcatgtctcctaggtttatgaat 164  Q
    ||||||||||||| | ||| ||||| || |   ||||||||||||||||||| | |||||||| |||||||||||| ||||||||||||| | |||||||    
T  27502411 ttttgacactttcgacttcctagcatcatatactgttgaccttctacatagaatccaaagggttatgcatagcaatatcatgtctcctagatctatgaat 27502312  T
Q  165 gttgtgcttgcgatgattggttttaccatccaaaaaggcctag 207  Q
    |||||| || ||| ||||| |||| | ||||||||||| ||||    
T  27502311 gttgtgtttacgaagattgattttgcaatccaaaaaggtctag 27502269  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #12
Raw Score: 59; E-Value: 1e-24
Query Start/End: Original strand, 27 - 156
Target Start/End: Original strand, 34814841 - 34814967
Alignment:
Q  27 gtgttctgacaatcaacatatgcttttataacatctgcttttgacactttcaatttcgtagcaccagaggttgttgaccttctacatagagttcaaaggg 126  Q
    ||||||||||||||||  |||||||||||| ||| |||||| |||||||||  || | || ||||||||  |||||||||||||||||||||||||| ||    
T  34814841 gtgttctgacaatcaa--tatgcttttataccatttgctttcgacactttcggttcc-taacaccagagactgttgaccttctacatagagttcaaatgg 34814937  T
Q  127 tcatgcatagcaatgtcatgtctcctaggt 156  Q
    ||||||||| |||||| ||||||| |||||    
T  34814938 tcatgcataacaatgttatgtctcttaggt 34814967  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #13
Raw Score: 58; E-Value: 4e-24
Query Start/End: Original strand, 91 - 200
Target Start/End: Original strand, 16351928 - 16352037
Alignment:
Q  91 cagaggttgttgaccttctacatagagttcaaagggtcatgcatagcaatgtcatgtctcctaggtttatgaatgttgtgcttgcgatgattggttttac 190  Q
    ||||||||||||||||||||||||||||||||| ||||||||| | |||||||||||||| |||||  |||||| || || || ||||||||| |||| |    
T  16351928 cagaggttgttgaccttctacatagagttcaaatggtcatgcacaacaatgtcatgtctcttaggtacatgaatattatgtttacgatgattgtttttgc 16352027  T
Q  191 catccaaaaa 200  Q
    |||| |||||    
T  16352028 catctaaaaa 16352037  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #14
Raw Score: 57; E-Value: 2e-23
Query Start/End: Original strand, 33 - 156
Target Start/End: Original strand, 20142753 - 20142874
Alignment:
Q  33 tgacaatcaacatatgcttttataacatctgcttttgacactttcaatttcgtagcaccagaggttgttgaccttctacatagagttcaaagggtcatgc 132  Q
    |||||||||||||  ||||||||| ||| | |||||||||||||   |||  ||||| || |||||||||||||| ||||||||||||||| |||||| |    
T  20142753 tgacaatcaacat--gcttttataccattttcttttgacacttttggttttctagcatcaaaggttgttgaccttatacatagagttcaaaaggtcatac 20142850  T
Q  133 atagcaatgtcatgtctcctaggt 156  Q
    ||| ||||||||||||||||||||    
T  20142851 ataacaatgtcatgtctcctaggt 20142874  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #15
Raw Score: 56; E-Value: 6e-23
Query Start/End: Original strand, 63 - 170
Target Start/End: Complemental strand, 44686467 - 44686360
Alignment:
Q  63 gcttttgacactttcaatttcgtagcaccagaggttgttgaccttctacatagagttcaaagggtcatgcatagcaatgtcatgtctcctaggtttatga 162  Q
    |||||||||||||||   ||| ||||| ||||| |||||||||||||||||||| | |||||||| |||||||||||||| |||||||||||||   |||    
T  44686467 gcttttgacactttcggcttcctagcatcagagtttgttgaccttctacatagattccaaagggttatgcatagcaatgttatgtctcctaggtccgtga 44686368  T
Q  163 atgttgtg 170  Q
    ||||||||    
T  44686367 atgttgtg 44686360  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #16
Raw Score: 55; E-Value: 3e-22
Query Start/End: Original strand, 69 - 155
Target Start/End: Complemental strand, 3825771 - 3825685
Alignment:
Q  69 gacactttcaatttcgtagcaccagaggttgttgaccttctacatagagttcaaagggtcatgcatagcaatgtcatgtctcctagg 155  Q
    ||||||||||||||| ||||| || ||||||||||||||| |||| ||||||||||  ||||||||||||||||||||||| |||||    
T  3825771 gacactttcaatttcctagcatcaaaggttgttgaccttcaacatcgagttcaaagaatcatgcatagcaatgtcatgtcttctagg 3825685  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #17
Raw Score: 53; E-Value: 4e-21
Query Start/End: Original strand, 121 - 233
Target Start/End: Complemental strand, 27494304 - 27494192
Alignment:
Q  121 aaagggtcatgcatagcaatgtcatgtctcctaggtttatgaatgttgtgcttgcgatgattggttttaccatccaaaaaggcctagcggcgcagcttgt 220  Q
    ||||||| ||| |||||||||| |||||||||| || ||||||| ||||| || |||  ||||||||| ||||||||||||| ||| |||||||||||||    
T  27494304 aaagggttatgtatagcaatgttatgtctcctaagtctatgaatattgtgtttacgaatattggttttgccatccaaaaaggtctaacggcgcagcttgt 27494205  T
Q  221 tgctcgcttgcct 233  Q
    |||  ||||||||    
T  27494204 tgcctgcttgcct 27494192  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #18
Raw Score: 49; E-Value: 1e-18
Query Start/End: Original strand, 22 - 149
Target Start/End: Original strand, 32029103 - 32029228
Alignment:
Q  22 aatgggtgttctgacaatcaacatatgcttttataacatctgcttttgacactttcaatttcgtagcaccagaggttgttgaccttctacatagagttca 121  Q
    |||| |||||| ||||||||||||  ||||| ||| ||| || ||||||||||||||  |||  | |  |||||| ||||||||||||||||||||||||    
T  32029103 aatgtgtgttcagacaatcaacat--gctttcatatcatttgtttttgacactttcagcttcccaacttcagaggctgttgaccttctacatagagttca 32029200  T
Q  122 aagggtcatgcatagcaatgtcatgtct 149  Q
    ||| ||||| |||| |||||||||||||    
T  32029201 aagagtcatccataacaatgtcatgtct 32029228  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #19
Raw Score: 45; E-Value: 2e-16
Query Start/End: Original strand, 27 - 214
Target Start/End: Original strand, 13147119 - 13147307
Alignment:
Q  27 gtgttctgacaatcaacatatgctttt-ataacatctgcttttgacactttcaatttcgtagcaccagaggttgttgaccttctacatagagttcaaagg 125  Q
    ||||||||||||||| ||||| ||||| ||| ||| || ||||||||||||   |||  || |||||||| ||||||||||||| |||| ||| ||||||    
T  13147119 gtgttctgacaatcagcatatactttttataccatttgattttgacacttttggttttctaacaccagagattgttgaccttcttcatatagtacaaagg 13147218  T
Q  126 gtcatgcatagcaatgtcatgtctcctaggtttatgaatgttgtgcttgcgatgattggttttaccatccaaaaaggcctagcggcgca 214  Q
    ||| |||| | ||||||| ||||| ||| ||| |||||| ||||  || |||  |||| ||||  |||| ||||||||||  |||||||    
T  13147219 gtcgtgcacaacaatgtcttgtcttctaagttcatgaatattgtatttacgaaaattgattttgtcatctaaaaaggccttacggcgca 13147307  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #20
Raw Score: 43; E-Value: 0.000000000000004
Query Start/End: Original strand, 179 - 237
Target Start/End: Original strand, 3208416 - 3208474
Alignment:
Q  179 gattggttttaccatccaaaaaggcctagcggcgcagcttgttgctcgcttgccttcta 237  Q
    |||||||||| |||||||||||||  ||||||||||||||||||| |||||||||||||    
T  3208416 gattggttttgccatccaaaaaggtttagcggcgcagcttgttgcccgcttgccttcta 3208474  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #21
Raw Score: 43; E-Value: 0.000000000000004
Query Start/End: Original strand, 81 - 156
Target Start/End: Original strand, 8036556 - 8036633
Alignment:
Q  81 ttcgtagcaccagaggttgttgaccttctacatagagttcaaagggtcatgc--atagcaatgtcatgtctcctaggt 156  Q
    |||||| || ||||||||||||||||| ||||||||||||||||| | ||||  ||| ||||||||||||||||||||    
T  8036556 ttcgtaacatcagaggttgttgaccttttacatagagttcaaaggtttatgcatatatcaatgtcatgtctcctaggt 8036633  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #22
Raw Score: 43; E-Value: 0.000000000000004
Query Start/End: Original strand, 179 - 237
Target Start/End: Complemental strand, 30602424 - 30602366
Alignment:
Q  179 gattggttttaccatccaaaaaggcctagcggcgcagcttgttgctcgcttgccttcta 237  Q
    |||||||||| ||||||||||||||||||| |||||||||||||| ||| |||||||||    
T  30602424 gattggttttgccatccaaaaaggcctagcagcgcagcttgttgcccgcatgccttcta 30602366  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #23
Raw Score: 43; E-Value: 0.000000000000004
Query Start/End: Original strand, 179 - 237
Target Start/End: Complemental strand, 41702207 - 41702149
Alignment:
Q  179 gattggttttaccatccaaaaaggcctagcggcgcagcttgttgctcgcttgccttcta 237  Q
    |||||||||| |||||||||||||||||| ||||||||||||||| | |||||||||||    
T  41702207 gattggttttgccatccaaaaaggcctagtggcgcagcttgttgcccacttgccttcta 41702149  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #24
Raw Score: 42; E-Value: 0.00000000000001
Query Start/End: Original strand, 105 - 202
Target Start/End: Original strand, 1296175 - 1296272
Alignment:
Q  105 cttctacatagagttcaaagggtcatgcatagcaatgtcatgtctcctaggtttatgaatgttgtgcttgcgatgattggttttaccatccaaaaagg 202  Q
    ||||||| |||||||||||||||||||||||| ||| |||||| ||||  || |||||||||| || ||  ||  ||||||||||| |||||||||||    
T  1296175 cttctacgtagagttcaaagggtcatgcatagtaatatcatgtttcctgtgtctatgaatgttttgtttatgagaattggttttacaatccaaaaagg 1296272  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #25
Raw Score: 37; E-Value: 0.00000000001
Query Start/End: Original strand, 27 - 150
Target Start/End: Original strand, 2886637 - 2886758
Alignment:
Q  27 gtgttctgacaatcaacatatgcttttataacatctgcttttgacactttcaatttcgtagcaccagaggttgttgaccttctacatagagttcaaaggg 126  Q
    ||||||||||||||||||| |  ||||||| ||| || |||||| | ||||  ||||  |||| |||||| |||||| ||| ||||||||||||||| |     
T  2886637 gtgttctgacaatcaacatgt--ttttatatcatttgtttttgatattttcggtttccaagcatcagaggctgttgatcttttacatagagttcaaaaga 2886734  T
Q  127 tcatgcatagcaatgtcatgtctc 150  Q
     ||||||||||||| |||| ||||    
T  2886735 gcatgcatagcaatatcatatctc 2886758  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #26
Raw Score: 37; E-Value: 0.00000000001
Query Start/End: Original strand, 85 - 161
Target Start/End: Complemental strand, 9200281 - 9200205
Alignment:
Q  85 tagcaccagaggttgttgaccttctacatagagttcaaagggtcatgcatagcaatgtcatgtctcctaggtttatg 161  Q
    |||||||| ||||||||||||||||| |   ||||||||| |||||||||| |||| | ||||||||||||| ||||    
T  9200281 tagcaccaaaggttgttgaccttctaaaactagttcaaagcgtcatgcataacaatattatgtctcctaggtatatg 9200205  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #27
Raw Score: 37; E-Value: 0.00000000001
Query Start/End: Original strand, 27 - 221
Target Start/End: Original strand, 11921232 - 11921418
Alignment:
Q  27 gtgttctgacaatcaacatatgcttttataacatctgcttttgacactttcaatttcgtagcaccagaggttgttgaccttctacatagagttcaaaggg 126  Q
    |||||||||||||||||||||  ||||||| | | || |||| | |||||||||||  | | | || ||  |||||||||||||||||||||||||||||    
T  11921232 gtgttctgacaatcaacatat--ttttataccgtttgttttttatactttcaattttctggtatcatagactgttgaccttctacatagagttcaaaggg 11921329  T
Q  127 tcatgcatagcaatgtcatgtctcctaggtttatgaatgttgtgcttgcgatgattggttttaccatccaaaaaggcctagcggcgcagcttgtt 221  Q
    |      || |||| | || ||| ||||||  |||||||||||| || | | |||| ||||  ||||||||||||  |||||| |||||||||||    
T  11921330 t------tatcaattttatatcttctaggtccatgaatgttgtgtttactaggattagtttcgccatccaaaaagatctagcgtcgcagcttgtt 11921418  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #28
Raw Score: 36; E-Value: 0.00000000005
Query Start/End: Original strand, 182 - 237
Target Start/End: Complemental strand, 42122749 - 42122694
Alignment:
Q  182 tggttttaccatccaaaaaggcctagcggcgcagcttgttgctcgcttgccttcta 237  Q
    ||||||| ||||||||||| | ||||||||||||||| ||| ||||||||||||||    
T  42122749 tggttttgccatccaaaaaagtctagcggcgcagcttattgttcgcttgccttcta 42122694  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #29
Raw Score: 35; E-Value: 0.0000000002
Query Start/End: Original strand, 104 - 170
Target Start/End: Original strand, 44684955 - 44685021
Alignment:
Q  104 ccttctacatagagttcaaagggtcatgcatagcaatgtcatgtctcctaggtttatgaatgttgtg 170  Q
    |||||||||||||||||||||||||||||||| |||| | ||||||  || ||  ||||||||||||    
T  44684955 ccttctacatagagttcaaagggtcatgcataacaatattatgtcttataagtccatgaatgttgtg 44685021  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #30
Raw Score: 34; E-Value: 0.0000000009
Query Start/End: Original strand, 28 - 200
Target Start/End: Original strand, 23484961 - 23485129
Alignment:
Q  28 tgttctgacaatcaacatatgcttttataacatctgcttttgacactttcaatttcgtagcaccagaggttgttgaccttctacatagagttcaaagggt 127  Q
    ||||||||||||||||||  ||||||||| ||| || ||||||||||| |  |||| |||||||||||    | ||| |  ||||||||||||||| | |    
T  23484961 tgttctgacaatcaacat--gcttttataccatttgtttttgacactt-ctgtttcctagcaccagagacaat-gacttcttacatagagttcaaaagat 23485056  T
Q  128 catgcatagcaatgtcatgtctcctaggtttatgaatgttgtgcttgcgatgattggttttaccatccaaaaa 200  Q
    |||||||| |||||  |||||||||||||  ||||| |||||| || | |  ||||||||| ||| |||||||    
T  23485057 catgcataacaatgctatgtctcctaggtccatgaacgttgtgtttacaaaaattggttttgccaaccaaaaa 23485129  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #31
Raw Score: 33; E-Value: 0.000000003
Query Start/End: Original strand, 146 - 238
Target Start/End: Original strand, 15515286 - 15515378
Alignment:
Q  146 gtctcctaggtttatgaatgttgtgcttgcgatgattggttttaccatccaaaaaggcctagcggcgcagcttgttgctcgcttgccttctac 238  Q
    |||||||||||  |  ||||||||| |  ||| |||||||||| ||||||||||| | |||||||||||| |||||||  | |||||||||||    
T  15515286 gtctcctaggtccaccaatgttgtgttcacgaggattggttttgccatccaaaaaagtctagcggcgcagtttgttgcctgtttgccttctac 15515378  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #32
Raw Score: 33; E-Value: 0.000000003
Query Start/End: Original strand, 88 - 175
Target Start/End: Original strand, 33612628 - 33612713
Alignment:
Q  88 caccagaggttgttgaccttctacatagagttcaaagggtcatgcatagcaatgtcatgtctcctaggtttatgaatgttgtgcttgc 175  Q
    |||| |||||||||||| |||||||  ||||||| ||||||   |||||||||||| |||| |||||||  |||||||||||| ||||    
T  33612628 caccggaggttgttgacattctaca--gagttcagagggtcgctcatagcaatgtcttgtcccctaggtccatgaatgttgtgtttgc 33612713  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #33
Raw Score: 31; E-Value: 0.00000005
Query Start/End: Original strand, 50 - 200
Target Start/End: Complemental strand, 29808139 - 29807989
Alignment:
Q  50 ttttataacatctgcttttgacactttcaatttcgtagcaccagaggttgttgaccttctacatagagttcaaagggtcatgcatagcaatgtcatgtct 149  Q
    ||||||| ||| ||||||| ||| | |  ||||| ||||| | ||||||||||||||| ||||||||||| ||  ||||||||| | |||  |||||  |    
T  29808139 ttttataccatttgcttttcacattatttatttcctagcatcggaggttgttgaccttttacatagagtttaagtggtcatgcacaacaacatcatgaat 29808040  T
Q  150 cctaggtttatgaatgttgtgcttgcgatgattggttttaccatccaaaaa 200  Q
    |||||||  |||||||| ||  || | | ||||| |||||| |||||||||    
T  29808039 cctaggtccatgaatgtcgtatttacaaggattgattttactatccaaaaa 29807989  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #34
Raw Score: 30; E-Value: 0.0000002
Query Start/End: Original strand, 181 - 222
Target Start/End: Original strand, 20143119 - 20143160
Alignment:
Q  181 ttggttttaccatccaaaaaggcctagcggcgcagcttgttg 222  Q
    |||||||| ||||||||||||| ||||||||||| |||||||    
T  20143119 ttggttttgccatccaaaaaggtctagcggcgcaacttgttg 20143160  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #35
Raw Score: 29; E-Value: 0.0000008
Query Start/End: Original strand, 27 - 150
Target Start/End: Complemental strand, 2888601 - 2888480
Alignment:
Q  27 gtgttctgacaatcaacatatgcttttataacatctgcttttgacactttcaatttcgtagcaccagaggttgttgaccttctacatagagttcaaaggg 126  Q
    ||||||||||||||||||| |  ||||||| |||  | || |||||||||    ||| || ||| ||||||||||||||||||||| |  |||||||  |    
T  2888601 gtgttctgacaatcaacatgt--ttttataccattcgtttatgacacttttggcttcctaacacaagaggttgttgaccttctacacaaggttcaaaatg 2888504  T
Q  127 tcatgcatagcaatgtcatgtctc 150  Q
    ||||||| | ||||||||| ||||    
T  2888503 tcatgcacaacaatgtcatatctc 2888480  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #36
Raw Score: 29; E-Value: 0.0000008
Query Start/End: Original strand, 88 - 140
Target Start/End: Complemental strand, 44720348 - 44720296
Alignment:
Q  88 caccagaggttgttgaccttctacatagagttcaaagggtcatgcatagcaat 140  Q
    |||||||||||||| || || |||||| |||||||||| ||||||||| ||||    
T  44720348 caccagaggttgttcactttttacataaagttcaaaggatcatgcataacaat 44720296  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1 (Bit Score: 116; Significance: 1e-58; HSPs: 38)
Name: chr1
Description:

Target: chr1; HSP #1
Raw Score: 116; E-Value: 1e-58
Query Start/End: Original strand, 27 - 237
Target Start/End: Complemental strand, 22346980 - 22346772
Alignment:
Q  27 gtgttctgacaatcaacatatgcttttataacatctgcttttgacactttcaatttcgtagcaccagaggttgttgaccttctacatagagttcaaaggg 126  Q
    |||||||||||||||||||  || |||||| | | ||||||||||||||||  |||| ||| | |||||||||||||||||||||| |||||||||| ||    
T  22346980 gtgttctgacaatcaacat--gcgtttataccttttgcttttgacactttcggtttcctagtagcagaggttgttgaccttctacacagagttcaaaagg 22346883  T
Q  127 tcatgcatagcaatgtcatgtctcctaggtttatgaatgttgtgcttgcgatgattggttttaccatccaaaaaggcctagcggcgcagcttgttgctcg 226  Q
    |||||||||| ||||||||||||||||||||||||||||||||| |  ||| |||| ||||| ||||||||||||| |||||||||||||||||||  ||    
T  22346882 tcatgcatagaaatgtcatgtctcctaggtttatgaatgttgtgttcacgaggattagttttgccatccaaaaaggtctagcggcgcagcttgttgtccg 22346783  T
Q  227 cttgccttcta 237  Q
    |||||||||||    
T  22346782 cttgccttcta 22346772  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #2
Raw Score: 108; E-Value: 6e-54
Query Start/End: Original strand, 27 - 237
Target Start/End: Complemental strand, 21473088 - 21472880
Alignment:
Q  27 gtgttctgacaatcaacatatgcttttataacatctgcttttgacactttcaatttcgtagcaccagaggttgttgaccttctacatagagttcaaaggg 126  Q
    ||||||||||||||||||| |  ||||||| ||| |||||||||||||| || |||| |||||||||||| |||||||||||||||||||||||||| ||    
T  21473088 gtgttctgacaatcaacatgt--ttttataccatttgcttttgacacttgcagtttcctagcaccagaggctgttgaccttctacatagagttcaaaagg 21472991  T
Q  127 tcatgcatagcaatgtcatgtctcctaggtttatgaatgttgtgcttgcgatgattggttttaccatccaaaaaggcctagcggcgcagcttgttgctcg 226  Q
    ||||||||||||||||||||||||||||||  |||||||||| | |   || || ||||||| ||||||||||||| ||||||||||| ||| |||| ||    
T  21472990 tcatgcatagcaatgtcatgtctcctaggtccatgaatgttgcgttcaggaggactggttttgccatccaaaaaggtctagcggcgcaacttattgcccg 21472891  T
Q  227 cttgccttcta 237  Q
    ||||| |||||    
T  21472890 cttgcattcta 21472880  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #3
Raw Score: 96; E-Value: 9e-47
Query Start/End: Original strand, 27 - 237
Target Start/End: Original strand, 28041149 - 28041357
Alignment:
Q  27 gtgttctgacaatcaacatatgcttttataacatctgcttttgacactttcaatttcgtagcaccagaggttgttgaccttctacatagagttcaaaggg 126  Q
    ||||||||||||||||||  |  ||||||| ||| ||||||||||||||||  |||| ||||||||||||  ||||||||||||||||||||||||| ||    
T  28041149 gtgttctgacaatcaacaggt--ttttataccatttgcttttgacactttcggtttcctagcaccagaggcggttgaccttctacatagagttcaaaagg 28041246  T
Q  127 tcatgcatagcaatgtcatgtctcctaggtttatgaatgttgtgcttgcgatgattggttttaccatccaaaaaggcctagcggcgcagcttgttgctcg 226  Q
    ||||||||||||||||||||||  ||| ||  ||||||||||||||   || ||||| |||| ||||||||||||| ||||||||| |||||||||  ||    
T  28041247 tcatgcatagcaatgtcatgtcctctaagtccatgaatgttgtgctcatgaggattgatttttccatccaaaaaggtctagcggcggagcttgttgtccg 28041346  T
Q  227 cttgccttcta 237  Q
    |||| ||||||    
T  28041347 cttgtcttcta 28041357  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #4
Raw Score: 96; E-Value: 9e-47
Query Start/End: Original strand, 46 - 229
Target Start/End: Complemental strand, 34644634 - 34644451
Alignment:
Q  46 atgcttttataacatctgcttttgacactttcaatttcgtagcaccagaggttgttgaccttctacatagagttcaaagggtcatgcatagcaatgtcat 145  Q
    ||||||||||| ||| || |||||||||||||   ||| ||||| |||||||||||||||||||||||||||| |||||||| ||||||| |||||| ||    
T  34644634 atgcttttataccatttgtttttgacactttcggcttcctagcatcagaggttgttgaccttctacatagagtccaaagggttatgcatatcaatgttat 34644535  T
Q  146 gtctcctaggtttatgaatgttgtgcttgcgatgattggttttaccatccaaaaaggcctagcggcgcagcttgttgctcgctt 229  Q
    |||||||||||  |||||||||||| || ||||||||| |||| ||||||||||| | |||||||||||| ||||||| |||||    
T  34644534 gtctcctaggtccatgaatgttgtgtttacgatgattgattttgccatccaaaaaagtctagcggcgcagtttgttgcccgctt 34644451  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #5
Raw Score: 93; E-Value: 5e-45
Query Start/End: Original strand, 34 - 237
Target Start/End: Original strand, 24177540 - 24177741
Alignment:
Q  34 gacaatcaacatatgcttttataacatctgcttttgacactttcaatttcgtagcaccagaggttgttgaccttctacatagagttcaaagggtcatgca 133  Q
    ||||||||||||||  ||||||| ||| || |||||||| ||||  |||| ||||| |||||| |||| |||||||||||||||||||||  ||||||||    
T  24177540 gacaatcaacatat--ttttataccatttgtttttgacagtttcggtttcctagcatcagaggctgtttaccttctacatagagttcaaaaagtcatgca 24177637  T
Q  134 tagcaatgtcatgtctcctaggtttatgaatgttgtgcttgcgatgattggttttaccatccaaaaaggcctagcggcgcagcttgttgctcgcttgcct 233  Q
    |||||||||||| ||||||||||  |||||||||||| |  ||| |||||||||| ||| ||||||||| ||||||| |||||||||||| |||||| ||    
T  24177638 tagcaatgtcatatctcctaggtccatgaatgttgtgttcacgaggattggttttgccaaccaaaaaggtctagcggtgcagcttgttgcccgcttgtct 24177737  T
Q  234 tcta 237  Q
    ||||    
T  24177738 tcta 24177741  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #6
Raw Score: 90; E-Value: 3e-43
Query Start/End: Original strand, 27 - 223
Target Start/End: Original strand, 20259819 - 20260013
Alignment:
Q  27 gtgttctgacaatcaacatatgcttttataacatctgcttttgacactttcaatttcgtagcaccagaggttgttgaccttctacatagagttcaaaggg 126  Q
    ||||||||||||||||||| |  ||||||| ||| |  | |||||||||||  |||| ||||||||||||||||||||||||||||||||||||||| ||    
T  20259819 gtgttctgacaatcaacatgt--ttttataccatttattgttgacactttcggtttcttagcaccagaggttgttgaccttctacatagagttcaaaagg 20259916  T
Q  127 tcatgcatagcaatgtcatgtctcctaggtttatgaatgttgtgcttgcgatgattggttttaccatccaaaaaggcctagcggcgcagcttgttgc 223  Q
    |||||||||| ||||||||||||| || ||| || ||||||||| ||     |||||||||| ||||||||||||| |||||||||||| |||||||    
T  20259917 tcatgcatagtaatgtcatgtctcataagttaataaatgttgtgtttatatggattggttttgccatccaaaaaggtctagcggcgcagtttgttgc 20260013  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #7
Raw Score: 88; E-Value: 5e-42
Query Start/End: Original strand, 27 - 221
Target Start/End: Complemental strand, 2764564 - 2764372
Alignment:
Q  27 gtgttctgacaatcaacatatgcttttataacatctgcttttgacactttcaatttcgtagcaccagaggttgttgaccttctacatagagttcaaaggg 126  Q
    |||||| ||||||||||||  ||||||||  ||| | |||||||||||||||  ||| ||||| |||||||||||||||||||||||| ||| |||||||    
T  2764564 gtgttccgacaatcaacat--gcttttatgccattttcttttgacactttcagcttcctagcatcagaggttgttgaccttctacataaagtccaaaggg 2764467  T
Q  127 tcatgcatagcaatgtcatgtctcctaggtttatgaatgttgtgcttgcgatgattggttttaccatccaaaaaggcctagcggcgcagcttgtt 221  Q
    | ||||| | |||||| ||||||| |||||  || ||||||||| || ||||||||| ||||||||||||||||||  |||||||||||||||||    
T  2764466 ttatgcaaatcaatgttatgtctcttaggtccataaatgttgtgtttacgatgattgattttaccatccaaaaaggtttagcggcgcagcttgtt 2764372  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #8
Raw Score: 85; E-Value: 3e-40
Query Start/End: Original strand, 27 - 221
Target Start/End: Complemental strand, 2898786 - 2898595
Alignment:
Q  27 gtgttctgacaatcaacatatgcttttataacatctgcttttgacactttcaatttcgtagcaccagaggttgttgaccttctacatagagttcaaaggg 126  Q
    |||||||||||||||| |   | ||||||| ||| ||||||||| ||||||  |||| ||||||||||||||||||||||||||||||||||||||| |     
T  2898786 gtgttctgacaatcaata---gtttttataccatttgcttttgatactttcggtttcctagcaccagaggttgttgaccttctacatagagttcaaaaga 2898690  T
Q  127 tcatgcatagcaatgtcatgtctcctaggtttatgaatgttgtgcttgcgatgattggttttaccatccaaaaaggcctagcggcgcagcttgtt 221  Q
    ||||||||| |||| ||||||||| || | | |||||||||||| ||  || ||||| |||| |||||||||||||| |||||||| ||||||||    
T  2898689 tcatgcataacaatatcatgtctcatacgatcatgaatgttgtgtttaagaggattgattttgccatccaaaaaggcttagcggcgtagcttgtt 2898595  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #9
Raw Score: 85; E-Value: 3e-40
Query Start/End: Original strand, 27 - 154
Target Start/End: Original strand, 29169815 - 29169940
Alignment:
Q  27 gtgttctgacaatcaacatatgcttttataacatctgcttttgacactttcaatttcgtagcaccagaggttgttgaccttctacatagagttcaaaggg 126  Q
    |||||||||||||||||||  ||||||||| ||| ||||||||||||||||  |||| ||||||||||||||||| ||||||||||||||||||||| ||    
T  29169815 gtgttctgacaatcaacat--gcttttataccatttgcttttgacactttcggtttcctagcaccagaggttgttaaccttctacatagagttcaaaagg 29169912  T
Q  127 tcatgcatagcaatgtcatgtctcctag 154  Q
    ||||||| ||||||||||||||||||||    
T  29169913 tcatgcacagcaatgtcatgtctcctag 29169940  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #10
Raw Score: 79; E-Value: 1e-36
Query Start/End: Original strand, 27 - 223
Target Start/End: Original strand, 45659670 - 45659862
Alignment:
Q  27 gtgttctgacaatcaacatatgcttttataacatctgcttttgacactttcaatttcgtagcaccagaggttgttgaccttctacatagagttcaaaggg 126  Q
    |||||||||||||||||||  ||||||||| ||| |||||||||||||||| ||||| || ||||||||| ||||||||||||  |||||||||||| |     
T  45659670 gtgttctgacaatcaacat--gcttttataccatttgcttttgacactttcgatttcctatcaccagaggctgttgaccttct--atagagttcaaaaga 45659765  T
Q  127 tcatgcatagcaatgtcatgtctcctaggtttatgaatgttgtgcttgcgatgattggttttaccatccaaaaaggcctagcggcgcagcttgttgc 223  Q
    ||||||||||||||||||||||||||||||  || ||||| ||| || ||| ||  ||||||  || ||||||||| ||||| |||||  |||||||    
T  45659766 tcatgcatagcaatgtcatgtctcctaggtcaataaatgtcgtgtttacgaggaccggttttgtcacccaaaaaggtctagctgcgcaaattgttgc 45659862  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #11
Raw Score: 76; E-Value: 7e-35
Query Start/End: Original strand, 30 - 223
Target Start/End: Original strand, 4862014 - 4862206
Alignment:
Q  30 ttctgacaatcaacatatgcttttataacatctgcttttgacactttcaatttcgtagcaccagaggttgttgaccttctacatagagttcaaagggtca 129  Q
    ||||||||| |||||||  ||||||||  || |||||||||||||||| ||||| || ||||| | ||||||||||||||||||||||||||||||||||    
T  4862014 ttctgacaagcaacata--cttttatacaatttgcttttgacactttcgatttcctaacaccaaaagttgttgaccttctacatagagttcaaagggtca 4862111  T
Q  130 tgcatagcaatgtcatgtctcctaggtttatgaatgttgtgcttgcgatgattg-gttttaccatccaaaaaggcctagcggcgcagcttgttgc 223  Q
    |||||| |||||||| ||| | ||| |  |||||||||||| || ||| |||||  |||| ||||  |  |||||||||||||||||||||||||    
T  4862112 tgcataacaatgtcacgtcccttagatccatgaatgttgtgattacgaggattgatttttgccatatatgaaggcctagcggcgcagcttgttgc 4862206  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #12
Raw Score: 70; E-Value: 3e-31
Query Start/End: Original strand, 30 - 222
Target Start/End: Original strand, 31737348 - 31737537
Alignment:
Q  30 ttctgacaatcaacatatgcttttataacatctgcttttgacactttcaatttcgtagcaccagaggttgttgaccttctacatagagttcaaagggtca 129  Q
    ||||||||||||||||  ||||||||| ||| || ||||||||||||| ||||  |||||  ||||| | ||||| |||||||||||||||||| |||||    
T  31737348 ttctgacaatcaacat--gcttttataccatttgtttttgacactttcgattttctagcattagaggctattgacattctacatagagttcaaaaggtca 31737445  T
Q  130 tgcatagcaatgtcatgtctcctaggtttatgaatgttgtgcttgcgatgattggttttaccatccaaaaaggcctagcggcgcagcttgttg 222  Q
    |||||| |||||| |||| |||||| |  |||||| | ||| || ||| ||||| |||| |||||||||||||| | ||||||||||||||||    
T  31737446 tgcatatcaatgttatgtttcctagatccatgaat-tagtgtttacgaggattgattttgccatccaaaaaggcttggcggcgcagcttgttg 31737537  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #13
Raw Score: 65; E-Value: 3e-28
Query Start/End: Original strand, 27 - 170
Target Start/End: Complemental strand, 38731694 - 38731553
Alignment:
Q  27 gtgttctgacaatcaacatatgcttttataacatctgcttttgacactttcaatttcgtagcaccagaggttgttgaccttctacatagagttcaaaggg 126  Q
    ||||||||||||||||||||  ||||||||  || ||||||||| |||||    ||| ||||||||||||||||| ||||||||||||||||||||||||    
T  38731694 gtgttctgacaatcaacata--cttttatacaatttgcttttgaaacttttggcttcttagcaccagaggttgttaaccttctacatagagttcaaaggg 38731597  T
Q  127 tcatgcatagcaatgtcatgtctcctaggtttatgaatgttgtg 170  Q
    ||||||| |  ||||||||| |||||||||  |||||| |||||    
T  38731596 tcatgcacaataatgtcatgactcctaggtccatgaatattgtg 38731553  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #14
Raw Score: 62; E-Value: 2e-26
Query Start/End: Original strand, 117 - 237
Target Start/End: Original strand, 868513 - 868631
Alignment:
Q  117 gttcaaagggtcatgcatagcaatgtcatgtctcctaggtttatgaatgttgtgcttgcgatgattggttttaccatccaaaaaggcctagcggcgcagc 216  Q
    ||||||| ||||||||||||||||||||||||||||| ||  ||||||  |||| |  | | |||||||||| ||||||||||||| |||||||||||||    
T  868513 gttcaaaaggtcatgcatagcaatgtcatgtctcctaagtccatgaat--tgtgttcacaaggattggttttgccatccaaaaaggtctagcggcgcagc 868610  T
Q  217 ttgttgctcgcttgccttcta 237  Q
    ||||||| |||||||||||||    
T  868611 ttgttgcccgcttgccttcta 868631  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #15
Raw Score: 62; E-Value: 2e-26
Query Start/End: Original strand, 65 - 237
Target Start/End: Complemental strand, 7213299 - 7213120
Alignment:
Q  65 ttttgacactttcaatttcgtagcaccagaggttgttgaccttctacatagagttcaaagggtcatgcatagcaatgtcatgtctcctaggtttatgaat 164  Q
    |||||||||||||  |||| |||||  ||||  |||||| ||||| |||| ||||||||  ||||||||||  |||||||||||| ||||||  ||||||    
T  7213299 ttttgacactttcggtttcctagcattagagactgttgagcttctgcataaagttcaaaatgtcatgcataataatgtcatgtcttctaggtccatgaat 7213200  T
Q  165 gttgtgcttgcga-------tgattggttttaccatccaaaaaggcctagcggcgcagcttgttgctcgcttgccttcta 237  Q
    |||||| |  |||       ||||||||||||||||||||||||| ||||||||||| |||||||| |||||||||||||    
T  7213199 gttgtgttcacgaatcacgatgattggttttaccatccaaaaaggtctagcggcgcaacttgttgcccgcttgccttcta 7213120  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #16
Raw Score: 53; E-Value: 4e-21
Query Start/End: Original strand, 137 - 237
Target Start/End: Complemental strand, 30688534 - 30688434
Alignment:
Q  137 caatgtcatgtctcctaggtttatgaatgttgtgcttgcgatgattggttttaccatccaaaaaggcctagcggcgcagcttgttgctcgcttgccttct 236  Q
    |||||||||| ||||| |||  |||||||||||| || ||| ||||||||||   |||||||||||||||||||||||||||||||| |||||||| |||    
T  30688534 caatgtcatgactcctgggtccatgaatgttgtgtttacgaggattggttttgttatccaaaaaggcctagcggcgcagcttgttgcccgcttgccatct 30688435  T
Q  237 a 237  Q
    |    
T  30688434 a 30688434  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #17
Raw Score: 49; E-Value: 1e-18
Query Start/End: Original strand, 27 - 142
Target Start/End: Complemental strand, 42919945 - 42919832
Alignment:
Q  27 gtgttctgacaatcaacatatgcttttataacatctgcttttgacactttcaatttcgtagcaccagaggttgttgaccttctacatagagttcaaaggg 126  Q
    ||||||| ||||||||||| |  ||||||  |||||||||||||||||||  |||||  ||||  |||| ||||| ||||||||||||||||| ||||||    
T  42919945 gtgttctcacaatcaacatgt--ttttatgtcatctgcttttgacacttttgatttccaagcagtagagattgttaaccttctacatagagtttaaaggg 42919848  T
Q  127 tcatgcatagcaatgt 142  Q
    ||||||| ||||||||    
T  42919847 tcatgcagagcaatgt 42919832  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #18
Raw Score: 49; E-Value: 1e-18
Query Start/End: Original strand, 50 - 222
Target Start/End: Complemental strand, 47459746 - 47459575
Alignment:
Q  50 ttttataacatctgcttttgacactttcaatttcgtagcaccagaggttgttgaccttctacatagagttcaaagggtcatgcatagcaatgtcatgtct 149  Q
    ||||||| ||| ||||||||| |||||    ||| ||| | ||||||  |||||||||||||||||||| ||||||   |||||||||||||| ||||||    
T  47459746 ttttataccatttgcttttgatacttttggcttcctagtatcagaggcagttgaccttctacatagagtccaaaggaatatgcatagcaatgttatgtct 47459647  T
Q  150 cctaggtttatgaatgttgtgcttgcgatgattggttttaccatccaaaaaggcctagcggcgcagcttgttg 222  Q
    |||| || ||| ||||||||| || |||  |||| |||  |||| |||||||| ||||| |||||||||||||    
T  47459646 cctaagtctataaatgttgtgtttacgagaattgatttagccattcaaaaaggtctagc-gcgcagcttgttg 47459575  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #19
Raw Score: 44; E-Value: 9e-16
Query Start/End: Original strand, 98 - 153
Target Start/End: Original strand, 35387747 - 35387802
Alignment:
Q  98 tgttgaccttctacatagagttcaaagggtcatgcatagcaatgtcatgtctccta 153  Q
    |||||| |||||||||||||||||||||| |||||||| |||||||||||||||||    
T  35387747 tgttgatcttctacatagagttcaaagggacatgcatatcaatgtcatgtctccta 35387802  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #20
Raw Score: 44; E-Value: 9e-16
Query Start/End: Original strand, 28 - 154
Target Start/End: Original strand, 50314647 - 50314771
Alignment:
Q  28 tgttctgacaatcaacatatgcttttataacatctgcttttgacactttcaatttcgtagcaccagaggttgttgaccttctacatagagttcaaagggt 127  Q
    |||||| |||||||||||  ||||||||| ||| | ||||||||| |||  ||||| || ||| ||| ||||||||| ||||||||||||||||||||||    
T  50314647 tgttctcacaatcaacat--gcttttataccatttacttttgacattttttatttcctaacacaagatgttgttgactttctacatagagttcaaagggt 50314744  T
Q  128 catgcatagcaatgtcatgtctcctag 154  Q
     || |  | |||||||||| |||||||    
T  50314745 tatacgcaacaatgtcatgactcctag 50314771  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #21
Raw Score: 43; E-Value: 0.000000000000004
Query Start/End: Original strand, 159 - 233
Target Start/End: Complemental strand, 5454050 - 5453976
Alignment:
Q  159 atgaatgttgtgcttgcgatgattggttttaccatccaaaaaggcctagcggcgcagcttgttgctcgcttgcct 233  Q
    |||||||||||| || | | ||||||||||  |||||||||||| |||||||||||||||||||| |||||||||    
T  5454050 atgaatgttgtgtttacaaggattggttttgtcatccaaaaaggtctagcggcgcagcttgttgcccgcttgcct 5453976  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #22
Raw Score: 40; E-Value: 0.0000000000002
Query Start/End: Original strand, 162 - 237
Target Start/End: Original strand, 1114023 - 1114098
Alignment:
Q  162 aatgttgtgcttgcgatgattggttttaccatccaaaaaggcctagcggcgcagcttgttgctcgcttgccttcta 237  Q
    ||||||||| || ||| |||||||||| ||||||||||||| ||| |||| ||||||||||| |||||| ||||||    
T  1114023 aatgttgtgtttacgaggattggttttgccatccaaaaaggtctaacggcacagcttgttgcccgcttggcttcta 1114098  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #23
Raw Score: 40; E-Value: 0.0000000000002
Query Start/End: Original strand, 37 - 140
Target Start/End: Original strand, 18616184 - 18616286
Alignment:
Q  37 aatcaacatatgcttttataacatctgcttttgacactttcaatttcgtagcaccagaggttgttgaccttctacatagagttcaaagggtcatgcatag 136  Q
    ||||||||| || ||||||| ||| || |||| |||||||| | ||  ||||||| |||| ||||||| ||||||||| | |||||||||||||||||||    
T  18616184 aatcaacatgtg-ttttataccatttgtttttaacactttcgactttctagcacccgaggctgttgacattctacatataattcaaagggtcatgcatag 18616282  T
Q  137 caat 140  Q
    ||||    
T  18616283 caat 18616286  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #24
Raw Score: 38; E-Value: 0.000000000004
Query Start/End: Original strand, 190 - 235
Target Start/End: Complemental strand, 44420636 - 44420591
Alignment:
Q  190 ccatccaaaaaggcctagcggcgcagcttgttgctcgcttgccttc 235  Q
    |||||||||||||| ||||||||||| |||||||||||||||||||    
T  44420636 ccatccaaaaaggcttagcggcgcagtttgttgctcgcttgccttc 44420591  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #25
Raw Score: 37; E-Value: 0.00000000001
Query Start/End: Original strand, 94 - 222
Target Start/End: Complemental strand, 36486897 - 36486770
Alignment:
Q  94 aggttgttgaccttctacatagagttcaaagggtcatgcatagcaatgtcatgtctcctaggtttatgaatgttgtgcttgcgatgattggttttaccat 193  Q
    ||||||||| |||||||||  || |||||| ||||||||||| | |||| || ||||| | ||  |||||| || || || |||||||||||||||  ||    
T  36486897 aggttgttgcccttctacacgga-ttcaaatggtcatgcataaccatgttatatctcccaagtcaatgaatattttgtttacgatgattggttttattat 36486799  T
Q  194 ccaaaaaggcctagcggcgcagcttgttg 222  Q
    |||||||| |||| ||||| |||||||||    
T  36486798 ccaaaaagacctaacggcggagcttgttg 36486770  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #26
Raw Score: 37; E-Value: 0.00000000001
Query Start/End: Original strand, 85 - 141
Target Start/End: Original strand, 50161498 - 50161554
Alignment:
Q  85 tagcaccagaggttgttgaccttctacatagagttcaaagggtcatgcatagcaatg 141  Q
    |||||||| |||||| |||| |||||||||||||||||||| ||||||| |||||||    
T  50161498 tagcaccaaaggttgatgacattctacatagagttcaaaggatcatgcagagcaatg 50161554  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #27
Raw Score: 36; E-Value: 0.00000000005
Query Start/End: Original strand, 159 - 230
Target Start/End: Complemental strand, 7483839 - 7483769
Alignment:
Q  159 atgaatgttgtgcttgcgatgattggttttaccatccaaaaaggcctagcggcgcagcttgttgctcgcttg 230  Q
    |||||||||||| || ||| |||| ||||| ||||| |||||||| |||||||||||| |||||||||||||    
T  7483839 atgaatgttgtgtttacgaagattagttttgccatctaaaaaggcttagcggcgcagc-tgttgctcgcttg 7483769  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #28
Raw Score: 36; E-Value: 0.00000000005
Query Start/End: Original strand, 99 - 222
Target Start/End: Original strand, 48841174 - 48841297
Alignment:
Q  99 gttgaccttctacatagagttcaaagggtcatgcatagcaatgtcatgtctcctaggtttatgaatgttgtgcttgcgatgattggttttaccatccaaa 198  Q
    ||||||||||||||||||||  |||| || |||||||  ||||| ||||||||||  | ||||||| || || || ||| ||||| |||| | |||||||    
T  48841174 gttgaccttctacatagagtctaaagagttatgcataataatgttatgtctcctaaatctatgaatattatgtttacgaggattgattttgcaatccaaa 48841273  T
Q  199 aaggcctagcggcgcagcttgttg 222  Q
    || | ||||| ||||| |||||||    
T  48841274 aaagtctagcagcgcaacttgttg 48841297  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #29
Raw Score: 35; E-Value: 0.0000000002
Query Start/End: Original strand, 110 - 200
Target Start/End: Original strand, 6670208 - 6670298
Alignment:
Q  110 acatagagttcaaagggtcatgcatagcaatgtcatgtctcctaggtttatgaatgttgtgcttgcgatgattggttttaccatccaaaaa 200  Q
    ||||||||||||||| |||||||||  ||||||||| |||||||| || ||||||||| |  || |||| |||  |||| |||||||||||    
T  6670208 acatagagttcaaagagtcatgcattacaatgtcatatctcctagattcatgaatgttatatttacgataattaattttgccatccaaaaa 6670298  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #30
Raw Score: 35; E-Value: 0.0000000002
Query Start/End: Original strand, 179 - 237
Target Start/End: Complemental strand, 19035414 - 19035356
Alignment:
Q  179 gattggttttaccatccaaaaaggcctagcggcgcagcttgttgctcgcttgccttcta 237  Q
    ||||||||||  |||||||||||| |||||||||||||||||||  || ||||||||||    
T  19035414 gattggttttgtcatccaaaaaggtctagcggcgcagcttgttgtccgattgccttcta 19035356  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #31
Raw Score: 34; E-Value: 0.0000000009
Query Start/End: Original strand, 114 - 199
Target Start/End: Original strand, 11128361 - 11128446
Alignment:
Q  114 agagttcaaagggtcatgcatagcaatgtcatgtctcctaggtttatgaatgttgtgcttgcgatgattggttttaccatccaaaa 199  Q
    |||||| ||| ||||||||||| |||||| ||||||||||||| ||| |||| |||| || | |||||| ||||| | ||||||||    
T  11128361 agagtttaaaaggtcatgcatatcaatgttatgtctcctaggtctataaatgatgtgtttacaatgatttgtttttctatccaaaa 11128446  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #32
Raw Score: 33; E-Value: 0.000000003
Query Start/End: Original strand, 142 - 234
Target Start/End: Complemental strand, 4611161 - 4611069
Alignment:
Q  142 tcatgtctcctaggtttatgaatgttgtgcttgcgatgattggttttaccatccaaaaaggcctagcggcgcagcttgttgctcgcttgcctt 234  Q
    |||||||||||||||  |||||| ||||| |  ||||||||| ||||  |||||||||||| ||| | || ||||||||||  ||||||||||    
T  4611161 tcatgtctcctaggtccatgaatattgtgttcacgatgattgattttgtcatccaaaaaggtctaacagcacagcttgttgtccgcttgcctt 4611069  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #33
Raw Score: 33; E-Value: 0.000000003
Query Start/End: Original strand, 179 - 223
Target Start/End: Complemental strand, 21934312 - 21934268
Alignment:
Q  179 gattggttttaccatccaaaaaggcctagcggcgcagcttgttgc 223  Q
    |||||||||| |||||||||||||  |||||||||||||||||||    
T  21934312 gattggttttgccatccaaaaagggttagcggcgcagcttgttgc 21934268  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #34
Raw Score: 31; E-Value: 0.00000005
Query Start/End: Original strand, 27 - 96
Target Start/End: Complemental strand, 19035532 - 19035465
Alignment:
Q  27 gtgttctgacaatcaacatatgcttttataacatctgcttttgacactttcaatttcgtagcaccagagg 96  Q
    |||||||||||||||||||  ||||||||| ||| | |||||||||||| |  |||| ||||||||||||    
T  19035532 gtgttctgacaatcaacat--gcttttataccatttacttttgacacttacggtttcctagcaccagagg 19035465  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #35
Raw Score: 30; E-Value: 0.0000002
Query Start/End: Original strand, 97 - 138
Target Start/End: Original strand, 3401886 - 3401927
Alignment:
Q  97 ttgttgaccttctacatagagttcaaagggtcatgcatagca 138  Q
    |||||||| |||||||||||||| |||| |||||||||||||    
T  3401886 ttgttgacattctacatagagtttaaagtgtcatgcatagca 3401927  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #36
Raw Score: 30; E-Value: 0.0000002
Query Start/End: Original strand, 97 - 138
Target Start/End: Complemental strand, 3444933 - 3444892
Alignment:
Q  97 ttgttgaccttctacatagagttcaaagggtcatgcatagca 138  Q
    |||||||| |||||||||||||| |||| |||||||||||||    
T  3444933 ttgttgacattctacatagagtttaaagtgtcatgcatagca 3444892  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #37
Raw Score: 30; E-Value: 0.0000002
Query Start/End: Original strand, 165 - 237
Target Start/End: Original strand, 16323961 - 16324036
Alignment:
Q  165 gttgtgcttgcgatgattggttttaccatccaaaaaggcctagcggcgcagcttgt---tgctcgcttgccttcta 237  Q
    |||||| || ||| ||||||||| |||||||||||||||||||  | |||||||||   ||||||||||| |||||    
T  16323961 gttgtgtttacgaggattggtttaaccatccaaaaaggcctagtagtgcagcttgttgttgctcgcttgctttcta 16324036  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #38
Raw Score: 30; E-Value: 0.0000002
Query Start/End: Original strand, 140 - 201
Target Start/End: Original strand, 45835319 - 45835380
Alignment:
Q  140 tgtcatgtctcctaggtttatgaatgttgtgcttgcgatgattggttttaccatccaaaaag 201  Q
    |||||| ||| |||||| ||||||||||||| || ||| ||||| |||| ||||||||||||    
T  45835319 tgtcatctcttctaggtctatgaatgttgtgtttacgaggattgattttgccatccaaaaag 45835380  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6 (Bit Score: 104; Significance: 1e-51; HSPs: 23)
Name: chr6
Description:

Target: chr6; HSP #1
Raw Score: 104; E-Value: 1e-51
Query Start/End: Original strand, 27 - 233
Target Start/End: Original strand, 17249327 - 17249531
Alignment:
Q  27 gtgttctgacaatcaacatatgcttttataacatctgcttttgacactttcaatttcgtagcaccagaggttgttgaccttctacatagagttcaaaggg 126  Q
    |||||||||||||||||||  ||||||||| ||| |||||||||||||||    ||| ||||| ||||||  |||||||||||||||||||| ||||||     
T  17249327 gtgttctgacaatcaacat--gcttttataccatttgcttttgacacttttggcttcctagcatcagaggcagttgaccttctacatagagtccaaagga 17249424  T
Q  127 tcatgcatagcaatgtcatgtctcctaggtttatgaatgttgtgcttgcgatgattggttttaccatccaaaaaggcctagcggcgcagcttgttgctcg 226  Q
    | ||| |||||||||| |||||||||| ||| |||||||||||| || ||| |||||||||| ||||||||||||| |||||||||||||||||||| ||    
T  17249425 ttatgtatagcaatgttatgtctcctaagttcatgaatgttgtgtttacgaggattggttttgccatccaaaaaggtctagcggcgcagcttgttgcccg 17249524  T
Q  227 cttgcct 233  Q
    |||||||    
T  17249525 cttgcct 17249531  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #2
Raw Score: 90; E-Value: 3e-43
Query Start/End: Original strand, 33 - 233
Target Start/End: Original strand, 33220739 - 33220937
Alignment:
Q  33 tgacaatcaacatatgcttttataacatctgcttttgacactttcaatttcgtagcaccagaggttgttgaccttctacatagagttcaaagggtcatgc 132  Q
    |||||||||||||  ||||||||| ||| ||||||||||||||||   ||| ||||| | |||||||||||||||||||||| ||| |||||||| ||||    
T  33220739 tgacaatcaacat--gcttttataccatttgcttttgacactttcggcttcctagcatccgaggttgttgaccttctacatatagtccaaagggttatgc 33220836  T
Q  133 atagcaatgtcatgtctcctaggtttatgaatgttgtgcttgcgatgattggttttaccatccaaaaaggcctagcggcgcagcttgttgctcgcttgcc 232  Q
    ||||||||||  ||||| ||||||  |||||||||| | || |||| ||||||||| |||||| |||||| |||||||||||||||||||  ||||||||    
T  33220837 atagcaatgttgtgtcttctaggtccatgaatgttgcgtttacgataattggttttgccatcctaaaaggtctagcggcgcagcttgttggccgcttgcc 33220936  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #3
Raw Score: 87; E-Value: 2e-41
Query Start/End: Original strand, 27 - 237
Target Start/End: Complemental strand, 28626016 - 28625808
Alignment:
Q  27 gtgttctgacaatcaacatatgcttttataacatctgcttttgacactttcaatttcgtagcaccagaggttgttgaccttctacatagagttcaaaggg 126  Q
    ||||||||||||||||||| |  ||||||| ||| || |||| |||||||||||||| ||||||||||||||||||| |||||||||| |||||||| ||    
T  28626016 gtgttctgacaatcaacatttt-ttttataccatttgttttttacactttcaatttcctagcaccagaggttgttgagcttctacataaagttcaaaagg 28625918  T
Q  127 tcatgcatagcaatgtcatgtctcctaggtttatgaatgttgtgcttgcgatgattggttttaccatccaaaaaggcctagcggcgcagcttgttgctcg 226  Q
    ||||||||| | ||||||| |||| ||||| ||||||||||||| || ||  ||||| |||| |||| |||||||  ||||||||||||||| || | ||    
T  28625917 tcatgcataac-atgtcatatctcataggtctatgaatgttgtgtttacggagattgattttgccattcaaaaagatctagcggcgcagcttattacccg 28625819  T
Q  227 cttgccttcta 237  Q
     ||||||||||    
T  28625818 tttgccttcta 28625808  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #4
Raw Score: 86; E-Value: 8e-41
Query Start/End: Original strand, 27 - 199
Target Start/End: Original strand, 4206618 - 4206788
Alignment:
Q  27 gtgttctgacaatcaacatatgcttttataacatctgcttttgacactttcaatttcgtagcaccagaggttgttgaccttctacatagagttcaaaggg 126  Q
    ||||||||||||| |||||  ||||||||| ||| ||||||||||||||||   ||| ||||||||||||||||||||||||||||||||||||||| ||    
T  4206618 gtgttctgacaatgaacat--gcttttatatcatttgcttttgacactttcgggttcctagcaccagaggttgttgaccttctacatagagttcaaaagg 4206715  T
Q  127 tcatgcatagcaatgtcatgtctcctaggtttatgaatgttgtgcttgcgatgattggttttaccatccaaaa 199  Q
    ||||||||  |||||||||||| |||||||  |||||| | ||| || ||| |||||||||| ||||||||||    
T  4206716 tcatgcatgacaatgtcatgtcacctaggtcaatgaatatagtgtttacgaggattggttttgccatccaaaa 4206788  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #5
Raw Score: 82; E-Value: 2e-38
Query Start/End: Original strand, 27 - 199
Target Start/End: Original strand, 4165944 - 4166114
Alignment:
Q  27 gtgttctgacaatcaacatatgcttttataacatctgcttttgacactttcaatttcgtagcaccagaggttgttgaccttctacatagagttcaaaggg 126  Q
    |||||||||||||||||||  ||||||||| ||| ||||||||||||||||   ||| ||||||||||||||||||||||||||||||||||| ||| ||    
T  4165944 gtgttctgacaatcaacat--gcttttatatcatttgcttttgacactttcgggttcctagcaccagaggttgttgaccttctacatagagtttaaaagg 4166041  T
Q  127 tcatgcatagcaatgtcatgtctcctaggtttatgaatgttgtgcttgcgatgattggttttaccatccaaaa 199  Q
    ||||||||  |||||||||||| |||||||  || ||| | ||| || ||| |||||||||| ||||||||||    
T  4166042 tcatgcatgacaatgtcatgtcacctaggtcaataaatatagtgtttacgaggattggttttgccatccaaaa 4166114  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #6
Raw Score: 76; E-Value: 7e-35
Query Start/End: Original strand, 27 - 237
Target Start/End: Complemental strand, 959665 - 959458
Alignment:
Q  27 gtgttctgacaatcaacatatgcttttataacatctgcttttgacactttcaatttcgtagcaccagaggttgttgaccttctacatagagttcaaaggg 126  Q
    ||||||||||||||||||| |   |||||| ||| || |||||||| ||||  |||| ||||||||||||||||||||||||||| || |||||||| ||    
T  959665 gtgttctgacaatcaacatgtc--tttataccatttgtttttgacattttcggtttcctagcaccagaggttgttgaccttctacgta-agttcaaaagg 959569  T
Q  127 tcatgcatagcaatgtcatgtctcctaggtttatgaatgttgtgcttgcgatgattggttttaccatccaaaaaggcctagcggcgcagcttgttgctcg 226  Q
    ||||||||||||||||  ||||||||||||  |||||||||||| || ||| ||||| ||||  |||| ||||||||||| | || || ||| || ||||    
T  959568 tcatgcatagcaatgttgtgtctcctaggtccatgaatgttgtgtttacgaggattgattttgtcatctaaaaaggcctaacagcacaacttatttctcg 959469  T
Q  227 cttgccttcta 237  Q
    ||||| |||||    
T  959468 cttgctttcta 959458  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #7
Raw Score: 74; E-Value: 1e-33
Query Start/End: Original strand, 27 - 223
Target Start/End: Original strand, 29338101 - 29338295
Alignment:
Q  27 gtgttctgacaatcaacatatgcttttataacatctgcttttgacactttcaatttcgtagcaccagaggttgttgaccttctacatagagttcaaaggg 126  Q
    ||||||| |||||||||||  ||| ||||| ||| ||||||||||||||   | ||| ||||||||||| | ||||||||||||||||  ||||||||||    
T  29338101 gtgttctaacaatcaacat--gctcttataccatttgcttttgacacttctgacttcctagcaccagagatcgttgaccttctacatatggttcaaaggg 29338198  T
Q  127 tcatgcatagcaatgtcatgtctcctaggtttatgaatgttgtgcttgcgatgattggttttaccatccaaaaaggcctagcggcgcagcttgttgc 223  Q
    ||||||| | |||||||||| |||||||||  |||||||||||| || | | ||||| |||| | |||||||| |||||||| | ||||||||||||    
T  29338199 tcatgcacatcaatgtcatgactcctaggtccatgaatgttgtgtttacaaggattgatttttctatccaaaatggcctagcagtgcagcttgttgc 29338295  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #8
Raw Score: 74; E-Value: 1e-33
Query Start/End: Original strand, 27 - 211
Target Start/End: Complemental strand, 34304581 - 34304399
Alignment:
Q  27 gtgttctgacaatcaacatatgcttttataacatctgcttttgacactttcaatttcgtagcaccagaggttgttgaccttctacatagagttcaaaggg 126  Q
    |||||||||||||||||||  ||||||||| ||| |||||||||||||||    ||| ||||| |||| | ||||||||||||||||||||| ||||| |    
T  34304581 gtgttctgacaatcaacat--gcttttataccatttgcttttgacactttgggcttcctagcatcagatgatgttgaccttctacatagagtccaaagag 34304484  T
Q  127 tcatgcatagcaatgtcatgtctcctaggtttatgaatgttgtgcttgcgatgattggttttaccatccaaaaaggcctagcggc 211  Q
    | |||||||||||| ||||||||| ||||| ||||||||||||  || ||| ||||| |||| | |||||||||||  |||||||    
T  34304483 ttatgcatagcaatatcatgtctcataggtctatgaatgttgtatttacgaggattgattttgcaatccaaaaaggtatagcggc 34304399  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #9
Raw Score: 72; E-Value: 2e-32
Query Start/End: Original strand, 27 - 149
Target Start/End: Original strand, 45699 - 45819
Alignment:
Q  27 gtgttctgacaatcaacatatgcttttataacatctgcttttgacactttcaatttcgtagcaccagaggttgttgaccttctacatagagttcaaaggg 126  Q
    |||||||||||||||||||  ||||||||  ||| || |||||||||||||  |||| |||||||||||| |||||||||||||||||||||||||| ||    
T  45699 gtgttctgacaatcaacat--gcttttattccatttgtttttgacactttcggtttcttagcaccagaggctgttgaccttctacatagagttcaaaagg 45796  T
Q  127 tcatgcatagcaatgtcatgtct 149  Q
    |||||||||||||||| ||||||    
T  45797 tcatgcatagcaatgttatgtct 45819  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #10
Raw Score: 66; E-Value: 7e-29
Query Start/End: Original strand, 122 - 235
Target Start/End: Original strand, 3137362 - 3137475
Alignment:
Q  122 aagggtcatgcatagcaatgtcatgtctcctaggtttatgaatgttgtgcttgcgatgattggttttaccatccaaaaaggcctagcggcgcagcttgtt 221  Q
    |||||||||||||||||||||||||||||||||||  |||||||||||| || ||| |||||||||| |||||||||||||| |||| | ||| ||||||    
T  3137362 aagggtcatgcatagcaatgtcatgtctcctaggtccatgaatgttgtgtttacgaggattggttttgccatccaaaaaggcttagcagtgcaacttgtt 3137461  T
Q  222 gctcgcttgccttc 235  Q
    || || ||||||||    
T  3137462 gcccgtttgccttc 3137475  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #11
Raw Score: 65; E-Value: 3e-28
Query Start/End: Original strand, 98 - 210
Target Start/End: Complemental strand, 32115734 - 32115622
Alignment:
Q  98 tgttgaccttctacatagagttcaaagggtcatgcatagcaatgtcatgtctcctaggtttatgaatgttgtgcttgcgatgattggttttaccatccaa 197  Q
    ||||||||||||||| |||||||||| ||||||||||| ||||||||||||||||||||  |||||||||||| || ||||||||| |||| | ||| ||    
T  32115734 tgttgaccttctacaaagagttcaaaaggtcatgcataacaatgtcatgtctcctaggtccatgaatgttgtgtttacgatgattgattttgctatctaa 32115635  T
Q  198 aaaggcctagcgg 210  Q
    ||||| |||||||    
T  32115634 aaaggtctagcgg 32115622  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #12
Raw Score: 56; E-Value: 6e-23
Query Start/End: Original strand, 50 - 229
Target Start/End: Original strand, 34554320 - 34554498
Alignment:
Q  50 ttttataacatctgcttttgacactttcaatttcgtagcaccagaggttgttgaccttctacatagagttcaaagggtcatgcatagcaatgtcatgtct 149  Q
    ||||||| ||| | |||||||||| |||   ||| |||||||||| | | ||||| |||||||||||||| ||| ||||||| |||||||| ||||||||    
T  34554320 ttttataccatttacttttgacacattcggcttcctagcaccagatgctattgactttctacatagagtttaaaaggtcatgtatagcaatatcatgtct 34554419  T
Q  150 cctaggtttatgaatgttgtgcttgcgatgattggttttaccatccaaaaaggcctagcggcgcagcttgttgctcgctt 229  Q
    | || | | |||||| ||||| || ||| ||||| ||||  ||||||||||||||||| ||| |||||| ||||||||||    
T  34554420 cgtaag-tcatgaattttgtgtttacgaggattgattttgtcatccaaaaaggcctagtggcacagcttattgctcgctt 34554498  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #13
Raw Score: 49; E-Value: 1e-18
Query Start/End: Original strand, 137 - 237
Target Start/End: Complemental strand, 34168897 - 34168798
Alignment:
Q  137 caatgtcatgtctcctaggtttatgaatgttgtgcttgcgatgattggttttaccatccaaaaaggcctagcggcgcagcttgttgctcgcttgccttct 236  Q
    |||||||||| ||||||| |  |||||||||||| || ||| |||||||||| | ||||||||||||||||||||||| ||||| || ||||||||||||    
T  34168897 caatgtcatgactcctagatccatgaatgttgtg-ttacgaggattggttttgctatccaaaaaggcctagcggcgcaacttgtcgcccgcttgccttct 34168799  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #14
Raw Score: 49; E-Value: 1e-18
Query Start/End: Original strand, 27 - 146
Target Start/End: Complemental strand, 34415521 - 34415404
Alignment:
Q  27 gtgttctgacaatcaacatatgcttttataacatctgcttttgacactttcaatttcgtagcaccagaggttgttgaccttctacatagagttcaaaggg 126  Q
    |||||||||||||||||||  ||||||||  ||| || ||||||||||||   |||| || ||||| | |  |||||||||||| |||||||||||| ||    
T  34415521 gtgttctgacaatcaacat--gcttttatgccatttgtttttgacactttaggtttcctaacaccaaatgcagttgaccttctatatagagttcaaatgg 34415424  T
Q  127 tcatgcatagcaatgtcatg 146  Q
    ||||||||||||||||||||    
T  34415423 tcatgcatagcaatgtcatg 34415404  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #15
Raw Score: 45; E-Value: 2e-16
Query Start/End: Original strand, 27 - 222
Target Start/End: Original strand, 357739 - 357931
Alignment:
Q  27 gtgttctgacaatcaacatatgcttttataacatctgcttttgacactttcaatttcgtagcaccagaggttgttgaccttctacatagagttcaaaggg 126  Q
    ||||||||||||| |||||  ||||||||||| | || |||| |||||||   |||| || ||  |||||||| |||||||||||||||||| |||| |     
T  357739 gtgttctgacaatgaacat--gcttttataacctttgtttttaacacttttg-tttcctaacattagaggttgatgaccttctacatagagtccaaatga 357835  T
Q  127 tcatgcatagcaatgtcatgtctcctaggtttatgaatgttgtgcttgcgatgattggttttaccatccaaaaaggcctagcggcgcagcttgttg 222  Q
    | | |||||||||||| || ||||||||||  |||||||||||| || ||| ||||  |||| ||||| ||||| |  |||||||  |||||||||    
T  357836 ttaagcatagcaatgttatctctcctaggtccatgaatgttgtgtttacgaagattaattttgccatctaaaaatgtatagcggcatagcttgttg 357931  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #16
Raw Score: 45; E-Value: 2e-16
Query Start/End: Original strand, 50 - 206
Target Start/End: Complemental strand, 3714981 - 3714825
Alignment:
Q  50 ttttataacatctgcttttgacactttcaatttcgtagcaccagaggttgttgaccttctacatagagttcaaagggtcatgcatagcaatgtcatgtct 149  Q
    ||||||| |||||| ||||||||||||  | ||| |||||||| ||  | |||| ||||||||||||||| ||||  ||||||| | |||||||||||||    
T  3714981 ttttatatcatctgtttttgacacttttgacttcttagcaccaaagactcttgatcttctacatagagtttaaagaatcatgcacaacaatgtcatgtct 3714882  T
Q  150 cctaggtttatgaatgttgtgcttgcgatgattggttttaccatccaaaaaggccta 206  Q
    | ||  |  |||||||||||| |||| | ||||| ||||||||| || |||| ||||    
T  3714881 cataaatccatgaatgttgtgtttgcaaggattgattttaccattcacaaagaccta 3714825  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #17
Raw Score: 45; E-Value: 2e-16
Query Start/End: Original strand, 28 - 237
Target Start/End: Original strand, 28009010 - 28009217
Alignment:
Q  28 tgttctgacaatcaaca-tatgcttttataacatctgcttttgacactttcaatttcgtagcaccagaggttgttgaccttctacatagagttcaaaggg 126  Q
    |||||| |||||||| | |||| ||||||| ||| |||||||||||||||   |  | || ||||| | ||||||||||||||  ||| |||||||||||    
T  28009010 tgttctaacaatcaagaatatggttttataccatttgcttttgacacttt---tggcttaacaccaaaagttgttgaccttctgtatatagttcaaaggg 28009106  T
Q  127 tcatgcatagcaatgtcatgtctcctaggtttatgaatgttgtgcttgcgatgattggttttaccatccaaaaaggcctagcggcgcagcttgttgctcg 226  Q
    |||| || | |||||||||| |||||||||  ||||| |||||  || | |  |||| |||| | ||||||||||||||| || |||||||| |||  ||    
T  28009107 tcatacacaacaatgtcatgactcctaggtccatgaacgttgtctttaccagaattgattttgcaatccaaaaaggcctaacgacgcagcttattgtccg 28009206  T
Q  227 cttgccttcta 237  Q
     ||||||||||    
T  28009207 tttgccttcta 28009217  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #18
Raw Score: 43; E-Value: 0.000000000000004
Query Start/End: Original strand, 159 - 233
Target Start/End: Complemental strand, 7749436 - 7749362
Alignment:
Q  159 atgaatgttgtgcttgcgatgattggttttaccatccaaaaaggcctagcggcgcagcttgttgctcgcttgcct 233  Q
    |||||||||||| || ||| |||||||||| |||||| |||||| ||||||| |||||||||||| |||||||||    
T  7749436 atgaatgttgtgtttacgaggattggttttgccatcctaaaaggtctagcggtgcagcttgttgcccgcttgcct 7749362  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #19
Raw Score: 43; E-Value: 0.000000000000004
Query Start/End: Original strand, 28 - 153
Target Start/End: Complemental strand, 24016421 - 24016298
Alignment:
Q  28 tgttctgacaatcaacatatgcttttataacatctgcttttgacactttcaatttcgtagcaccagaggttgttgaccttctacatagagttcaaagggt 127  Q
    |||||| ||||||||||| |  ||||||| ||| |||| |||| | |||   |||| |||||||||| ||||||||  || |||||||||||||||||||    
T  24016421 tgttctcacaatcaacatgt--ttttataccatttgctattgatagttttggtttcctagcaccagatgttgttgattttttacatagagttcaaagggt 24016324  T
Q  128 catgcatagcaatgtcatgtctccta 153  Q
    |||||| |  ||||||||||||||||    
T  24016323 catgcacaagaatgtcatgtctccta 24016298  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #20
Raw Score: 37; E-Value: 0.00000000001
Query Start/End: Original strand, 99 - 183
Target Start/End: Original strand, 31703561 - 31703645
Alignment:
Q  99 gttgaccttctacatagagttcaaagggtcatgcatagcaatgtcatgtctcctaggtttatgaatgttgtgcttgcgatgattg 183  Q
    ||||||||||||||||||||| ||| | ||||||| | |||| ||||||||| | |||| |||||| ||||||||  ||||||||    
T  31703561 gttgaccttctacatagagtttaaatgatcatgcacatcaatatcatgtctcattggttcatgaatattgtgcttaggatgattg 31703645  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #21
Raw Score: 35; E-Value: 0.0000000002
Query Start/End: Original strand, 91 - 201
Target Start/End: Original strand, 13398266 - 13398376
Alignment:
Q  91 cagaggttgttgaccttctacatagagttcaaagggtcatgcatagcaatgtcatgtctcctaggtttatgaatgttgtgcttgcgatgattggttttac 190  Q
    |||| ||||||||| |||||||||||||||||| | | ||||||| |||||||| | || |||| |  || ||||||||| || ||||| ||| ||||      
T  13398266 cagaagttgttgacattctacatagagttcaaaagatgatgcataacaatgtcacgacttctagatgcataaatgttgtgtttacgatggttgattttgt 13398365  T
Q  191 catccaaaaag 201  Q
    |||||||||||    
T  13398366 catccaaaaag 13398376  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #22
Raw Score: 34; E-Value: 0.0000000009
Query Start/End: Original strand, 85 - 210
Target Start/End: Original strand, 26225657 - 26225782
Alignment:
Q  85 tagcaccagaggttgttgaccttctacatagagttcaaagggtcatgcatagcaatgtcatgtctcctaggtttatgaatgttgtgcttgcgatgattgg 184  Q
    |||||| ||| ||||||| ||||| |||||||||||||||| ||||||| || ||  | |||||| ||||||  ||| || ||||| ||  || ||||||    
T  26225657 tagcactagatgttgttggccttcaacatagagttcaaaggctcatgcagagaaacattatgtcttctaggtcgatggattttgtgtttatgaggattgg 26225756  T
Q  185 ttttaccatccaaaaaggcctagcgg 210  Q
    ||||  ||||||||||| | ||||||    
T  26225757 ttttgtcatccaaaaagacttagcgg 26225782  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #23
Raw Score: 31; E-Value: 0.00000005
Query Start/End: Original strand, 99 - 169
Target Start/End: Original strand, 7200627 - 7200697
Alignment:
Q  99 gttgaccttctacatagagttcaaagggtcatgcatagcaatgtcatgtctcctaggtttatgaatgttgt 169  Q
    ||||||||| |||||| | ||||||| ||||||||||||||  | ||||||||||| |  |||||||||||    
T  7200627 gttgaccttttacataaatttcaaagagtcatgcatagcaacattatgtctcctagatcaatgaatgttgt 7200697  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4 (Bit Score: 104; Significance: 1e-51; HSPs: 52)
Name: chr4
Description:

Target: chr4; HSP #1
Raw Score: 104; E-Value: 1e-51
Query Start/End: Original strand, 31 - 233
Target Start/End: Complemental strand, 3330077 - 3329877
Alignment:
Q  31 tctgacaatcaacatatgcttttataacatctgcttttgacactttcaatttcgtagcaccagaggttgttgaccttctacatagagttcaaagggtcat 130  Q
    |||||||||||||||  |||||||||  || |||||||||||||||    ||| ||||| ||||||  |||||||||||||||||||| |||||||| ||    
T  3330077 tctgacaatcaacat--gcttttatactatttgcttttgacacttttggcttcctagcatcagaggcagttgaccttctacatagagtccaaagggttat 3329980  T
Q  131 gcatagcaatgtcatgtctcctaggtttatgaatgttgtgcttgcgatgattggttttaccatccaaaaaggcctagcggcgcagcttgttgctcgcttg 230  Q
    |||||||||||| |||||||||||||  ||||||| |||| || |||||||||||||| ||||||||||||| |||||||||||||||||||| ||||||    
T  3329979 gcatagcaatgttatgtctcctaggtccatgaatgctgtgtttacgatgattggttttgccatccaaaaaggtctagcggcgcagcttgttgcccgcttg 3329880  T
Q  231 cct 233  Q
    |||    
T  3329879 cct 3329877  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #2
Raw Score: 99; E-Value: 1e-48
Query Start/End: Original strand, 67 - 233
Target Start/End: Complemental strand, 4419310 - 4419145
Alignment:
Q  67 ttgacactttcaatttcgtagcaccagaggttgttgaccttctacatagagttcaaagggtcatgcatagcaatgtcatgtctcctaggtttatgaatgt 166  Q
    |||||||||||   ||||||||| ||||||||||||||||||||||||||||||||||||| ||||||| |||||| |||||||||||||  ||||||||    
T  4419310 ttgacactttcggcttcgtagcatcagaggttgttgaccttctacatagagttcaaagggttatgcataacaatgttatgtctcctaggtccatgaatgt 4419211  T
Q  167 tgtgcttgcgatgattggttttaccatccaaaaaggcctagcggcgcagcttgttgctcgcttgcct 233  Q
    |||| || |||||||||||||| |||||||||||   |||||||||||||||||||| |||||||||    
T  4419210 tgtgtttacgatgattggttttgccatccaaaaa-atctagcggcgcagcttgttgcccgcttgcct 4419145  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #3
Raw Score: 90; E-Value: 3e-43
Query Start/End: Original strand, 27 - 223
Target Start/End: Complemental strand, 53619671 - 53619477
Alignment:
Q  27 gtgttctgacaatcaacatatgcttttataacatctgcttttgacactttcaatttcgtagcaccagaggttgttgaccttctacatagagttcaaaggg 126  Q
    |||||||||||||||||||  ||||||||| ||| || ||||||||||||  | ||| ||||| ||||||  ||||||||||||||||||||  ||||||    
T  53619671 gtgttctgacaatcaacat--gcttttataccatttgtttttgacacttttgacttcctagcatcagaggcagttgaccttctacatagagtctaaaggg 53619574  T
Q  127 tcatgcatagcaatgtcatgtctcctaggtttatgaatgttgtgcttgcgatgattggttttaccatccaaaaaggcctagcggcgcagcttgttgc 223  Q
    | ||||||| |||||| ||||||| |||||  |||||||||||| || |||  ||||||||| ||||||||||||| ||||||||||||||||||||    
T  53619573 ttatgcataacaatgttatgtctcttaggtccatgaatgttgtgtttacgagaattggttttgccatccaaaaaggtctagcggcgcagcttgttgc 53619477  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #4
Raw Score: 89; E-Value: 1e-42
Query Start/End: Original strand, 27 - 237
Target Start/End: Original strand, 30940761 - 30940962
Alignment:
Q  27 gtgttctgacaatcaacatatgcttttataacatctgcttttgacactttcaatttcgtagcaccagaggttgttgaccttctacatagagttcaaaggg 126  Q
    |||||||||||||||||||  ||||||||| ||| |||||||||||||||| ||||| ||||||| |||| ||||      |||||||||||||||| ||    
T  30940761 gtgttctgacaatcaacat--gcttttataccat-tgcttttgacactttcgatttcctagcacctgaggctgtt------ctacatagagttcaaaagg 30940851  T
Q  127 tcatgcatagcaatgtcatgtctcctaggtttatgaatgttgtgcttgcgatgattggttttaccatccaaaaaggcctagcggcgcagcttgttgctcg 226  Q
    ||||||||| ||||||||| | |||||||| ||||||||||||| |   || ||||| |||| ||||||||||||| |||||| ||||||||||||| ||    
T  30940852 tcatgcataacaatgtcatatatcctaggtctatgaatgttgtgttcatgaggattgattttgccatccaaaaaggtctagcgacgcagcttgttgcccg 30940951  T
Q  227 cttgccttcta 237  Q
    |||||||||||    
T  30940952 cttgccttcta 30940962  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #5
Raw Score: 88; E-Value: 5e-42
Query Start/End: Original strand, 46 - 237
Target Start/End: Original strand, 600731 - 600922
Alignment:
Q  46 atgcttttataacatctgcttttgacactttcaatttcgtagcaccagaggttgttgaccttctacatagagttcaaagggtcatgcatagcaatgtcat 145  Q
    ||||||||||| ||| |||||||| |||||||  |||| || |||||||||||||||||||||||||||||||||||| ||||||| ||| | |||||||    
T  600731 atgcttttataccatttgcttttgtcactttcggtttcctaacaccagaggttgttgaccttctacatagagttcaaaaggtcatgtataactatgtcat 600830  T
Q  146 gtctcctaggtttatgaatgttgtgcttgcgatgattggttttaccatccaaaaaggcctagcggcgcagcttgttgctcgcttgccttcta 237  Q
    |||||||||||  || |||| |||| || |||||||| ||||| ||||||||||| |  ||||| || |||||||||  |||||||||||||    
T  600831 gtctcctaggtccattaatgctgtgtttacgatgattagttttgccatccaaaaatgtatagcgacgtagcttgttgtccgcttgccttcta 600922  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #6
Raw Score: 84; E-Value: 1e-39
Query Start/End: Original strand, 27 - 237
Target Start/End: Complemental strand, 26521573 - 26521366
Alignment:
Q  27 gtgttctgacaatcaacatatgcttttataacatctgcttttgacactttcaatttcgtagcaccagaggttgttgaccttctacatagagttcaaaggg 126  Q
    ||||| |||||||||||||  ||||||||| ||| ||||||  |||||||   |||| |||||||||||| ||||||||||||||||| |||||||||||    
T  26521573 gtgttatgacaatcaacat--gcttttatatcatatgctttcaacacttttggtttcctagcaccagaggctgttgaccttctacatacagttcaaaggg 26521476  T
Q  127 tcatgcatagcaatgtcatgtctcctaggtttatgaatgttgtgcttgcgatgattggttttaccatccaaaaaggcctagcggcgcagcttgttgctcg 226  Q
    |||||| |||||||||||||| |||||||   ||| |||||||| || ||| ||||||||||  ||||||||||||  ||||||| |||||| |||  ||    
T  26521475 tcatgcgtagcaatgtcatgtatcctaggcccatg-atgttgtgtttacgaggattggttttgtcatccaaaaaggtttagcggcacagctttttgtccg 26521377  T
Q  227 cttgccttcta 237  Q
    |||||||||||    
T  26521376 cttgccttcta 26521366  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #7
Raw Score: 80; E-Value: 3e-37
Query Start/End: Original strand, 28 - 233
Target Start/End: Original strand, 55933485 - 55933686
Alignment:
Q  28 tgttctgacaatcaacatatgcttttataacatctgcttttgacactttcaatttcgtagcaccagaggttgttgaccttctacatagagttcaaagggt 127  Q
    |||||| |||||||||||  ||||||||| ||| |||||||||||||||| | ||| ||||| |||  ||||||||||||||||||||||| ||||||||    
T  55933485 tgttctaacaatcaacat--gcttttataccatttgcttttgacactttcgacttcctagcatcag--gttgttgaccttctacatagagtccaaagggt 55933580  T
Q  128 catgcatagcaatgtcatgtctcctaggtttatgaatgttgtgcttgcgatgattggttttaccatccaaaaaggcctagcggcgcagcttgttgctcgc 227  Q
     || |||| |||| | |||||||||||||   ||||||||||| || ||||||||| |||| ||||||||||| | |||||| ||||| ||||||  |||    
T  55933581 tatacataacaatattatgtctcctaggtccgtgaatgttgtgtttacgatgattgattttgccatccaaaaaagtctagcgacgcagtttgttgtccgc 55933680  T
Q  228 ttgcct 233  Q
    ||||||    
T  55933681 ttgcct 55933686  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #8
Raw Score: 78; E-Value: 5e-36
Query Start/End: Original strand, 50 - 223
Target Start/End: Original strand, 34107739 - 34107912
Alignment:
Q  50 ttttataacatctgcttttgacactttcaatttcgtagcaccagaggttgttgaccttctacatagagttcaaagggtcatgcatagcaatgtcatgtct 149  Q
    ||||||| ||| || ||||||||||||| ||||| |||||||||||| ||||||||||||||||||||||||||  |||||||||| |||||| ||||||    
T  34107739 ttttataccatttgtttttgacactttcgatttcctagcaccagaggctgttgaccttctacatagagttcaaaaagtcatgcataacaatgttatgtct 34107838  T
Q  150 cctaggtttatgaatgttgtgcttgcgatgattggttttaccatccaaaaaggcctagcggcgcagcttgttgc 223  Q
    ||||| |  |||||||||||| |  ||| ||||||||||  |||||||||| |  || |||| |||||||||||    
T  34107839 cctagatccatgaatgttgtgttcacgaggattggttttgtcatccaaaaaagtttaacggcacagcttgttgc 34107912  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #9
Raw Score: 77; E-Value: 2e-35
Query Start/End: Original strand, 27 - 233
Target Start/End: Original strand, 50000947 - 50001152
Alignment:
Q  27 gtgttctgacaatcaacatatgcttttataaca-tctgcttttgacactttcaatttcgtagcaccagaggttgttgaccttctacatagagttcaaagg 125  Q
    |||||||||||||||||||  |||||||  ||| | |||||||||||||||    ||  ||||| ||||||  |||||||||||||||| ||| ||||||    
T  50000947 gtgttctgacaatcaacat--gcttttaatacaatttgcttttgacacttttggctttctagcatcagaggcagttgaccttctacatatagtccaaagg 50001044  T
Q  126 gtcatgcatagcaatgtcatgtctcctaggtttatgaatgttgtgcttgcgatgattggttttaccatccaaaaaggcctagcggcgcagcttgttgctc 225  Q
    || |||||||||||||| ||||||||||| |  || ||||||||| || ||| ||||| |||| ||||||||||||  |||||||||||||||||||| |    
T  50001045 gttatgcatagcaatgttatgtctcctagatccataaatgttgtgtttacgaagattgattttgccatccaaaaagatctagcggcgcagcttgttgccc 50001144  T
Q  226 gcttgcct 233  Q
    ||||||||    
T  50001145 gcttgcct 50001152  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #10
Raw Score: 76; E-Value: 7e-35
Query Start/End: Original strand, 98 - 237
Target Start/End: Original strand, 50464387 - 50464526
Alignment:
Q  98 tgttgaccttctacatagagttcaaagggtcatgcatagcaatgtcatgtctcctaggtttatgaatgttgtgcttgcgatgattggttttaccatccaa 197  Q
    |||||||||||||| ||||||| ||||||||||||||| ||||||||||||||| |  | ||||||||||||| || ||| ||||  |||| ||||||||    
T  50464387 tgttgaccttctacgtagagtttaaagggtcatgcataacaatgtcatgtctcccaaatatatgaatgttgtgtttacgaggatttattttgccatccaa 50464486  T
Q  198 aaaggcctagcggcgcagcttgttgctcgcttgccttcta 237  Q
    |||| ||||||||||||||||||||  |||||||||||||    
T  50464487 aaagacctagcggcgcagcttgttgtccgcttgccttcta 50464526  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #11
Raw Score: 73; E-Value: 5e-33
Query Start/End: Original strand, 27 - 230
Target Start/End: Original strand, 7536593 - 7536794
Alignment:
Q  27 gtgttctgacaatcaacatatgcttttataacatctgcttttgacactttcaatttcgtagcaccagaggttgttgaccttctacatagagttcaaaggg 126  Q
    ||||| ||||||||||||| |  |||||||  || || |||||||| ||||| |||| ||||||||||||||||||||||||||||||||||||||| |     
T  7536593 gtgttttgacaatcaacatgt--ttttatacaatttgtttttgacaatttcagtttcctagcaccagaggttgttgaccttctacatagagttcaaatga 7536690  T
Q  127 tcatgcatagcaatgtcatgtctcctaggtttatgaatgttgtgcttgcgatgattggttttaccatccaaaaaggcctagcggcgcagcttgttgctcg 226  Q
    || ||||||||||| | ||||||| ||| |  ||||||||| || || | ||||||||||||   ||||||||||  ||||| | ||| |||||||||||    
T  7536691 tcgtgcatagcaattttatgtctcgtagatccatgaatgttatgtttacaatgattggttttgtgatccaaaaagatctagcagtgcaacttgttgctcg 7536790  T
Q  227 cttg 230  Q
    ||||    
T  7536791 cttg 7536794  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #12
Raw Score: 71; E-Value: 7e-32
Query Start/End: Original strand, 99 - 233
Target Start/End: Complemental strand, 39001412 - 39001278
Alignment:
Q  99 gttgaccttctacatagagttcaaagggtcatgcatagcaatgtcatgtctcctaggtttatgaatgttgtgcttgcgatgattggttttaccatccaaa 198  Q
    |||||||||||||||||||| |||||| | ||||||| ||||||  ||||||||||||  |||||||||||| || ||| ||||||||||  ||||||||    
T  39001412 gttgaccttctacatagagtccaaaggattatgcataacaatgttgtgtctcctaggtccatgaatgttgtgtttacgaggattggttttgtcatccaaa 39001313  T
Q  199 aaggcctagcggcgcagcttgttgctcgcttgcct 233  Q
    |||| |||||||||||| ||||||| |||||||||    
T  39001312 aaggtctagcggcgcagtttgttgcccgcttgcct 39001278  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #13
Raw Score: 71; E-Value: 7e-32
Query Start/End: Original strand, 27 - 188
Target Start/End: Original strand, 56462128 - 56462287
Alignment:
Q  27 gtgttctgacaatcaacatatgcttttataacatctgcttttgacactttcaatttcgtagcaccagaggttgttgaccttctacatagagttcaaaggg 126  Q
    ||||||||||||||||||| |  ||||||| ||| || ||| ||||||||   |||| |||||||||||||||||||||||||||||||||||||||||     
T  56462128 gtgttctgacaatcaacatgt--ttttataccatttgttttagacacttttggtttcctagcaccagaggttgttgaccttctacatagagttcaaagga 56462225  T
Q  127 tcatgcatagcaatgtcatgtctcctaggtttatgaatgttgtgcttgcgatgattggtttt 188  Q
    ||||||||  ||||||||||||||||| ||  || ||||||||| || |||  |||||||||    
T  56462226 tcatgcatgacaatgtcatgtctcctaagtccataaatgttgtgtttacgagaattggtttt 56462287  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #14
Raw Score: 70; E-Value: 3e-31
Query Start/End: Original strand, 85 - 238
Target Start/End: Complemental strand, 16955489 - 16955336
Alignment:
Q  85 tagcaccagaggttgttgaccttctacatagagttcaaagggtcatgcatagcaatgtcatgtctcctaggtttatgaatgttgtgcttgcgatgattgg 184  Q
    ||||||||||||||| ||||||||||||||||||||||| |||||||||||||||||||||||||||||||   |||||||||||| || ||| |||||     
T  16955489 tagcaccagaggttgctgaccttctacatagagttcaaaaggtcatgcatagcaatgtcatgtctcctaggcccatgaatgttgtgtttacgaggattga 16955390  T
Q  185 ttttaccatccaaaaaggcctagcggcgcagcttgttgctcgcttgccttctac 238  Q
    |||  ||||| ||||||  |   || ||||| ||||||  ||||||||||||||    
T  16955389 tttggccatcaaaaaagatccgacgacgcagtttgttgtccgcttgccttctac 16955336  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #15
Raw Score: 69; E-Value: 1e-30
Query Start/End: Original strand, 27 - 154
Target Start/End: Original strand, 6865842 - 6865967
Alignment:
Q  27 gtgttctgacaatcaacatatgcttttataacatctgcttttgacactttcaatttcgtagcaccagaggttgttgaccttctacatagagttcaaaggg 126  Q
    |||||||||| ||||||||  ||||||||| ||| ||||||||||||||| |  ||| |||||| ||| |||||| ||||| ||||||||||||||||||    
T  6865842 gtgttctgactatcaacat--gcttttatatcatttgcttttgacactttgagcttcatagcactagatgttgttaaccttttacatagagttcaaaggg 6865939  T
Q  127 tcatgcatagcaatgtcatgtctcctag 154  Q
    | ||||||||||||||||||||||||||    
T  6865940 taatgcatagcaatgtcatgtctcctag 6865967  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #16
Raw Score: 69; E-Value: 1e-30
Query Start/End: Original strand, 62 - 217
Target Start/End: Complemental strand, 53170565 - 53170409
Alignment:
Q  62 tgcttttgacactttcaatttcgtagcaccagaggttgttgaccttctacatagagttcaaagggtcatgcatagcaatgtcatgtctccta-ggtttat 160  Q
    ||||||||||||||||  |||  |||||||||||| |||||||||||||||||||||||||| |||||||||||||||||||||||||||||  | | ||    
T  53170565 tgcttttgacactttcggtttgctagcaccagaggctgttgaccttctacatagagttcaaaaggtcatgcatagcaatgtcatgtctcctataggtcat 53170466  T
Q  161 gaatgttgtgcttgcgatgattggttttaccatccaaaaaggcctagcggcgcagct 217  Q
    |||||||||| |  ||| ||||| |||| | ||| ||||||| ||||| | ||||||    
T  53170465 gaatgttgtgttcacgaggattgattttgctatctaaaaaggtctagcagtgcagct 53170409  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #17
Raw Score: 68; E-Value: 4e-30
Query Start/End: Original strand, 34 - 234
Target Start/End: Original strand, 50462975 - 50463170
Alignment:
Q  34 gacaatcaacatatgcttttataacatctgcttttgacactttcaatttcgtagcaccagaggttgttgaccttctacatagagttcaaagggtcatgca 133  Q
    ||||||||||||  ||||| ||| ||| |||||||||||||||  ||||| |  ||||||||  |||||||||||||| ||||||| |||||| ||||||    
T  50462975 gacaatcaacat--gctttcataccatttgcttttgacacttttgatttccttacaccagagactgttgaccttctacgtagagtttaaagggccatgca 50463072  T
Q  134 tagcaatgtcatgtctcctaggtttatgaatgttgtgcttgcgatgattggttttaccatccaaaaaggcctagcggcgcagcttgttgctcgcttgcct 233  Q
    || ||||| ||||||||| | || |||||   ||||| || ||| |||| ||||| |||||||||||| ||||||||||||||||| ||  |||||||||    
T  50463073 taacaatgccatgtctcccaagtatatga---ttgtgtttacgaggatttgttttgccatccaaaaagacctagcggcgcagcttgctgtccgcttgcct 50463169  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #18
Raw Score: 66; E-Value: 7e-29
Query Start/End: Original strand, 46 - 207
Target Start/End: Original strand, 38535608 - 38535768
Alignment:
Q  46 atgcttttataacatctgcttttgacactttcaatttcgtagcaccagaggttgttgaccttctacatagagttcaaagggtcatgcatagcaatgtcat 145  Q
    ||||| ||||| ||| ||| |||||||||||  | ||| ||||||||||||||||| ||| |||||||||||||||||| ||||||||||||||||||||    
T  38535608 atgctcttataccatttgcatttgacacttttgacttcctagcaccagaggttgttcaccctctacatagagttcaaagagtcatgcatagcaatgtcat 38535707  T
Q  146 gtctcctaggtttatgaatgttgtgcttgcgatgattggttttaccatccaaaaaggcctag 207  Q
    ||||  |||||  ||| |||||||| || ||| |||| |||||  ||||||||| |||||||    
T  38535708 gtcttataggtccatggatgttgtgtttacgaggattagtttt-gcatccaaaacggcctag 38535768  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #19
Raw Score: 60; E-Value: 3e-25
Query Start/End: Original strand, 27 - 237
Target Start/End: Complemental strand, 132470 - 132262
Alignment:
Q  27 gtgttctgacaatcaacatatgcttttataacatctgcttttgacactttcaatttcgtagcaccagaggttgttgaccttctacatagagttcaaaggg 126  Q
    |||||||||||||||||||  ||||||||| ||| || |||| ||||||||  |||| ||  | ||||| |||||||| ||||||| |||||| ||||||    
T  132470 gtgttctgacaatcaacat--gcttttataccatttgttttttacactttcggtttcctaatatcagagattgttgacattctacacagagtttaaaggg 132373  T
Q  127 tcatgcatagcaatgtcatgtctcctaggtttatgaatgttgtgcttgcgatgattggttttaccatccaaaaaggcctagcggcgcagcttgttgctcg 226  Q
    ||| ||||| |||||||||||||  |||||| |||| ||||||| || | |  || | ||||| |||| |||||||  || ||| |||||||||| | ||    
T  132372 tcaagcataacaatgtcatgtcttttaggttcatgattgttgtgtttacaagaatcgattttatcatctaaaaaggtataacggtgcagcttgttccccg 132273  T
Q  227 cttgccttcta 237  Q
    |||||||||||    
T  132272 cttgccttcta 132262  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #20
Raw Score: 60; E-Value: 3e-25
Query Start/End: Original strand, 99 - 222
Target Start/End: Complemental strand, 23255728 - 23255605
Alignment:
Q  99 gttgaccttctacatagagttcaaagggtcatgcatagcaatgtcatgtctcctaggtttatgaatgttgtgcttgcgatgattggttttaccatccaaa 198  Q
    |||||||||||||||||||| |||||||| ||||||| |||||| |||||||||| ||  |||||| ||||| || ||| ||||| |||| ||||||| |    
T  23255728 gttgaccttctacatagagtccaaagggttatgcataacaatgttatgtctcctaagtccatgaatattgtgtttacgaggattgattttgccatccaga 23255629  T
Q  199 aaggcctagcggcgcagcttgttg 222  Q
    || | |||||||||||||||||||    
T  23255628 aaagtctagcggcgcagcttgttg 23255605  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #21
Raw Score: 59; E-Value: 1e-24
Query Start/End: Original strand, 30 - 131
Target Start/End: Original strand, 50483221 - 50483320
Alignment:
Q  30 ttctgacaatcaacatatgcttttataacatctgcttttgacactttcaatttcgtagcaccagaggttgttgaccttctacatagagttcaaagggtca 129  Q
    ||||||||||||||||  | ||||||| ||| |||||| |||||||||  |||| ||||||||||||||||||||||||||||||||||||||| |||||    
T  50483221 ttctgacaatcaacat--gattttataccatttgctttcgacactttcggtttcctagcaccagaggttgttgaccttctacatagagttcaaaaggtca 50483318  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #22
Raw Score: 53; E-Value: 4e-21
Query Start/End: Original strand, 106 - 238
Target Start/End: Complemental strand, 45661699 - 45661567
Alignment:
Q  106 ttctacatagagttcaaagggtcatgcatagcaatgtcatgtctcctaggtttatgaatgttgtgcttgcgatgattggttttaccatccaaaaaggcct 205  Q
    ||||||||| ||||||||||||||| || | |||||||||  ||| |||||  |||||| ||||| || ||| |||||||||||| |||||||||| |||    
T  45661699 ttctacataaagttcaaagggtcatacacaacaatgtcataactcgtaggtccatgaatattgtgtttacgaggattggttttactatccaaaaagacct 45661600  T
Q  206 agcggcgcagcttgttgctcgcttgccttctac 238  Q
    | |||  ||| ||||||| ||||||||||||||    
T  45661599 aacggtacagtttgttgcacgcttgccttctac 45661567  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #23
Raw Score: 52; E-Value: 2e-20
Query Start/End: Original strand, 50 - 201
Target Start/End: Original strand, 48656953 - 48657109
Alignment:
Q  50 ttttataacatctgcttttgacactttcaatttcgtagc-accagaggttgttgacctt----ctacatagagttcaaagggtcatgcatagcaatgtca 144  Q
    ||||||| ||| || ||||||||||||| | ||| |||| |  ||||||||||||||||    ||||||||||| |||| | | |||||||||||||| |    
T  48656953 ttttataccatttgtttttgacactttcgacttcttagcgattagaggttgttgaccttccttctacatagagtccaaatgattatgcatagcaatgtta 48657052  T
Q  145 tgtctcctaggtttatgaatgttgtgcttgcgatgattggttttaccatccaaaaag 201  Q
    |||||| ||||| ||||||||||||| || ||||||||| |||| || |||||||||    
T  48657053 tgtctcataggtctatgaatgttgtgtttacgatgattgattttgccgtccaaaaag 48657109  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #24
Raw Score: 50; E-Value: 2e-19
Query Start/End: Original strand, 92 - 237
Target Start/End: Original strand, 42455692 - 42455837
Alignment:
Q  92 agaggttgttgaccttctacatagagttcaaagggtcatgcatagcaatgtcatgtctcctaggtttatgaatgttgtgcttgcgatgattggttttacc 191  Q
    |||||||||| ||||||||||||||||||||| | ||||| ||| ||||||||||| | ||||||  |||||||||||  || |||  ||||  |||  |    
T  42455692 agaggttgttaaccttctacatagagttcaaatgatcatggataacaatgtcatgttttctaggtccatgaatgttgtttttacgagaattgactttgtc 42455791  T
Q  192 atccaaaaaggcctagcggcgcagcttgttgctcgcttgccttcta 237  Q
    || ||||||||  |||| || || ||||||||||||||||||||||    
T  42455792 attcaaaaaggtttagcagcacaacttgttgctcgcttgccttcta 42455837  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #25
Raw Score: 47; E-Value: 1e-17
Query Start/End: Original strand, 137 - 235
Target Start/End: Original strand, 50442609 - 50442707
Alignment:
Q  137 caatgtcatgtctcctaggtttatgaatgttgtgcttgcgatgattggttttaccatccaaaaaggcctagcggcgcagcttgttgctcgcttgccttc 235  Q
    |||||| |||||||||||||| ||| |||||||| ||  || |||||||||| |||||||||||||  ||| ||||||||||||||| |||||| ||||    
T  50442609 caatgttatgtctcctaggttcatggatgttgtgtttaagaggattggttttgccatccaaaaagggttagtggcgcagcttgttgcccgcttgtcttc 50442707  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #26
Raw Score: 46; E-Value: 6e-17
Query Start/End: Original strand, 50 - 163
Target Start/End: Original strand, 46440932 - 46441045
Alignment:
Q  50 ttttataacatctgcttttgacactttcaatttcgtagcaccagaggttgttgaccttctacatagagttcaaagggtcatgcatagcaatgtcatgtct 149  Q
    ||||||| ||| ||||||||||||||||   ||| ||||| |||| | || |||||||||||||||||| ||||||||  ||||||||||||  ||||||    
T  46440932 ttttatatcatttgcttttgacactttcggcttcctagcatcagaagctgctgaccttctacatagagtccaaagggttgtgcatagcaatgctatgtct 46441031  T
Q  150 cctaggtttatgaa 163  Q
    | |||||| |||||    
T  46441032 cataggttcatgaa 46441045  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #27
Raw Score: 45; E-Value: 2e-16
Query Start/End: Original strand, 62 - 202
Target Start/End: Complemental strand, 25504347 - 25504207
Alignment:
Q  62 tgcttttgacactttcaatttcgtagcaccagaggttgttgaccttctacatagagttcaaagggtcatgcatagcaatgtcatgtctcctaggtttatg 161  Q
    ||||||||||| |||   |||| |||||| ||||  |||||||||| || |||||||| ||| |||||||||||| ||||||||||||| |||||  |||    
T  25504347 tgcttttgacatttttggtttcctagcactagagactgttgaccttttaaatagagtttaaaaggtcatgcatagtaatgtcatgtctcataggtccatg 25504248  T
Q  162 aatgttgtgcttgcgatgattggttttaccatccaaaaagg 202  Q
    ||| ||||| ||  || ||||| |||| |||| ||||||||    
T  25504247 aatattgtgtttatgaggattgcttttgccattcaaaaagg 25504207  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #28
Raw Score: 45; E-Value: 2e-16
Query Start/End: Original strand, 62 - 146
Target Start/End: Original strand, 54190906 - 54190990
Alignment:
Q  62 tgcttttgacactttcaatttcgtagcaccagaggttgttgaccttctacatagagttcaaagggtcatgcatagcaatgtcatg 146  Q
    |||||||||||||||  | ||  ||| | |||||||||||||||||| ||||||||||||||||| |||||||| ||||||||||    
T  54190906 tgcttttgacacttttgactttctagtatcagaggttgttgaccttccacatagagttcaaagggccatgcataacaatgtcatg 54190990  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #29
Raw Score: 44; E-Value: 9e-16
Query Start/End: Original strand, 103 - 234
Target Start/End: Original strand, 23233211 - 23233340
Alignment:
Q  103 accttctacatagagttcaaagggtcatgcatagcaatgtcatgtctcctaggtttatgaatgttgtgcttgcgatgattggttttaccatccaaaaagg 202  Q
    ||||||||| |||||||||| ||||||||||||  |||||||||| |||||| || |||||||||||  ||  || ||||| |||  | |||||||||||    
T  23233211 accttctacgtagagttcaa-gggtcatgcataataatgtcatgtttcctagattcatgaatgttgtctttatgaggattgatttggctatccaaaaagg 23233309  T
Q  203 cctagcggcgcagcttgttgctcgcttgcctt 234  Q
    | |||| || ||||||||||| ||||||||||    
T  23233310 cttagcagcacagcttgttgc-cgcttgcctt 23233340  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #30
Raw Score: 44; E-Value: 9e-16
Query Start/End: Original strand, 146 - 233
Target Start/End: Complemental strand, 31847071 - 31846984
Alignment:
Q  146 gtctcctaggtttatgaatgttgtgcttgcgatgattggttttaccatccaaaaaggcctagcggcgcagcttgttgctcgcttgcct 233  Q
    |||||||||||  |||||||||||| | |||| |||| ||| | ||||||||||||| |||||||||||| ||||||| |||||||||    
T  31847071 gtctcctaggtccatgaatgttgtgttagcgaggattcgttatgccatccaaaaaggtctagcggcgcaggttgttgcccgcttgcct 31846984  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #31
Raw Score: 43; E-Value: 0.000000000000004
Query Start/End: Original strand, 179 - 237
Target Start/End: Original strand, 40392726 - 40392784
Alignment:
Q  179 gattggttttaccatccaaaaaggcctagcggcgcagcttgttgctcgcttgccttcta 237  Q
    |||||||||| ||||||||||||| |||||||||||||||||||  |||||||||||||    
T  40392726 gattggttttgccatccaaaaaggtctagcggcgcagcttgttgtccgcttgccttcta 40392784  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #32
Raw Score: 41; E-Value: 0.00000000000006
Query Start/End: Original strand, 119 - 187
Target Start/End: Original strand, 18981651 - 18981718
Alignment:
Q  119 tcaaagggtcatgcatagcaatgtcatgtctcctaggtttatgaatgttgtgcttgcgatgattggttt 187  Q
    |||||||||||||||||| |||||||||||| ||||||  |||||||||||| || |||||||||||||    
T  18981651 tcaaagggtcatgcatagtaatgtcatgtct-ctaggtccatgaatgttgtgtttacgatgattggttt 18981718  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #33
Raw Score: 41; E-Value: 0.00000000000006
Query Start/End: Original strand, 66 - 170
Target Start/End: Complemental strand, 28739953 - 28739849
Alignment:
Q  66 tttgacactttcaatttcgtagcaccagaggttgttgaccttctacatagagttcaaagggtcatgcatagcaatgtcatgtctcctaggtttatgaatg 165  Q
    |||||||||||| | ||| || ||||| | |||||||||||| |||||||||||||| | |  ||||||| |||||| |||||||||||||  || ||||    
T  28739953 tttgacactttcgacttcctaacaccacaagttgttgaccttttacatagagttcaacgtgcaatgcataacaatgttatgtctcctaggtccataaatg 28739854  T
Q  166 ttgtg 170  Q
    |||||    
T  28739853 ttgtg 28739849  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #34
Raw Score: 38; E-Value: 0.000000000004
Query Start/End: Original strand, 91 - 136
Target Start/End: Original strand, 747853 - 747898
Alignment:
Q  91 cagaggttgttgaccttctacatagagttcaaagggtcatgcatag 136  Q
    ||||||||||||||||||||||||||||| ||| ||||||||||||    
T  747853 cagaggttgttgaccttctacatagagtttaaaaggtcatgcatag 747898  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #35
Raw Score: 38; E-Value: 0.000000000004
Query Start/End: Original strand, 116 - 221
Target Start/End: Complemental strand, 8738203 - 8738098
Alignment:
Q  116 agttcaaagggtcatgcatagcaatgtcatgtctcctaggtttatgaatgttgtgcttgcgatgattggttttaccatccaaaaaggcctagcggcgcag 215  Q
    |||||||||| |||||||||  ||||||||||||| |||||| ||||||||||||  | | | ||||| ||||  |||||||||| |  |||||||||||    
T  8738203 agttcaaaggctcatgcataaaaatgtcatgtctcttaggttcatgaatgttgtgtatacaaagattgattttgtcatccaaaaaagtttagcggcgcag 8738104  T
Q  216 cttgtt 221  Q
     |||||    
T  8738103 tttgtt 8738098  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #36
Raw Score: 38; E-Value: 0.000000000004
Query Start/End: Original strand, 92 - 188
Target Start/End: Complemental strand, 52403963 - 52403869
Alignment:
Q  92 agaggttgttgaccttctacatagagttcaaagggtcatgcatagcaatgtcatgtctcctaggtttatgaatgttgtgcttgcgatgattggtttt 188  Q
    |||||||  |||||||||||||| |||||||||||||||| | | |||| |||  |||| ||||||||| ||||||||| || ||| ||||||||||    
T  52403963 agaggttaatgaccttctacatatagttcaaagggtcatgtacaacaatatca--tctcttaggtttataaatgttgtgtttacgaagattggtttt 52403869  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #37
Raw Score: 37; E-Value: 0.00000000001
Query Start/End: Original strand, 27 - 118
Target Start/End: Original strand, 12918394 - 12918483
Alignment:
Q  27 gtgttctgacaatcaacatatgcttttataacatctgcttttgacactttcaatttcgtagcaccagaggttgttgaccttctacatagagt 118  Q
    |||||||||||||||||| |  ||||||||  || | |||||||||||||| | ||| ||||| ||||| |||||||||||||| |||||||    
T  12918394 gtgttctgacaatcaacaca--cttttatactatttacttttgacactttcgacttcctagcatcagagattgttgaccttctagatagagt 12918483  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #38
Raw Score: 37; E-Value: 0.00000000001
Query Start/End: Original strand, 80 - 132
Target Start/End: Complemental strand, 53098455 - 53098403
Alignment:
Q  80 tttcgtagcaccagaggttgttgaccttctacatagagttcaaagggtcatgc 132  Q
    |||| ||||| ||||||||||| ||||||||||||||||||||| ||||||||    
T  53098455 tttcctagcatcagaggttgttaaccttctacatagagttcaaatggtcatgc 53098403  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #39
Raw Score: 36; E-Value: 0.00000000005
Query Start/End: Original strand, 153 - 232
Target Start/End: Complemental strand, 1041386 - 1041307
Alignment:
Q  153 aggtttatgaatgttgtgcttgcgatgattggttttaccatccaaaaaggcctagcggcgcagcttgttgctcgcttgcc 232  Q
    ||||| |||||||||||| || ||||||||| ||||||||||||||||  |||| ||||| ||||| |||  ||||||||    
T  1041386 aggttcatgaatgttgtgttttcgatgattgattttaccatccaaaaaaacctaacggcgtagcttattgtccgcttgcc 1041307  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #40
Raw Score: 36; E-Value: 0.00000000005
Query Start/End: Original strand, 115 - 234
Target Start/End: Complemental strand, 23242899 - 23242780
Alignment:
Q  115 gagttcaaagggtcatgcatagcaatgtcatgtctcctaggtttatgaatgttgtgcttgcgatgattggttttaccatccaaaaaggcctagcggcgca 214  Q
    ||||| ||||||||||||||| ||||||||| |||| |||||  || ||| ||||| || ||||||||| ||||   ||||||||||  ||| |||| ||    
T  23242899 gagtttaaagggtcatgcataacaatgtcatttctcttaggtccataaatattgtgtttacgatgattgattttgttatccaaaaagctctaacggcaca 23242800  T
Q  215 gcttgttgctcgcttgcctt 234  Q
     ||| ||| |||||||||||    
T  23242799 acttattgttcgcttgcctt 23242780  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #41
Raw Score: 36; E-Value: 0.00000000005
Query Start/End: Original strand, 97 - 200
Target Start/End: Complemental strand, 34213636 - 34213534
Alignment:
Q  97 ttgttgaccttctacatagagttcaaagggtcatgcatagcaatgtcatgtctcctaggtttatgaatgttgtgcttgcgatgattggttttaccatcca 196  Q
    |||||||||||||| ||||||||||||||||||||| || ||||||  | |||||||| |  |||||||||||| || | | ||| |||||| ||||||     
T  34213636 ttgttgaccttctagatagagttcaaagggtcatgcctaacaatgt-gtctctcctagttccatgaatgttgtgtttacaaggatcggttttgccatccg 34213538  T
Q  197 aaaa 200  Q
    ||||    
T  34213537 aaaa 34213534  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #42
Raw Score: 35; E-Value: 0.0000000002
Query Start/End: Original strand, 92 - 170
Target Start/End: Original strand, 32312796 - 32312874
Alignment:
Q  92 agaggttgttgaccttctacatagagttcaaagggtcatgcatagcaatgtcatgtctcctaggtttatgaatgttgtg 170  Q
    |||||| ||||| ||| |||| |||||||||| ||||||||||| ||||||  ||||| |||| | |||||||||||||    
T  32312796 agaggtcgttgatcttatacaaagagttcaaaaggtcatgcataacaatgtagtgtcttctagatctatgaatgttgtg 32312874  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #43
Raw Score: 35; E-Value: 0.0000000002
Query Start/End: Original strand, 92 - 169
Target Start/End: Original strand, 46391399 - 46391474
Alignment:
Q  92 agaggttgttgaccttctacatagagttcaaagggtcatgcatagcaatgtcatgtctcctaggtttatgaatgttgt 169  Q
    ||||||||||||||||||||||| |||||||| | |||||||   |||||||||||||||||  |  |||||||||||    
T  46391399 agaggttgttgaccttctacataaagttcaaaagatcatgcaa--caatgtcatgtctcctaaatccatgaatgttgt 46391474  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #44
Raw Score: 34; E-Value: 0.0000000009
Query Start/End: Original strand, 91 - 136
Target Start/End: Original strand, 712677 - 712722
Alignment:
Q  91 cagaggttgttgaccttctacatagagttcaaagggtcatgcatag 136  Q
    |||||||||||| |||||||||||||||| ||| ||||||||||||    
T  712677 cagaggttgttgtccttctacatagagtttaaaaggtcatgcatag 712722  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #45
Raw Score: 33; E-Value: 0.000000003
Query Start/End: Original strand, 96 - 237
Target Start/End: Complemental strand, 9601223 - 9601087
Alignment:
Q  96 gttgttgaccttctacatagagttcaaagggtcatgcatagcaatgtcatgtctcctaggtttatgaatgttgtgcttgcgatgattggttttaccatcc 195  Q
    ||||||||||||||||||| |||| |||||||| ||||     |||||||| |||||||||| || | || |||| || ||| ||||| ||||  |||||    
T  9601223 gttgttgaccttctacataaagtttaaagggtcgtgca----catgtcatgactcctaggttcataagtggtgtgtttacgaggattgattttgtcatcc 9601128  T
Q  196 aaaaaggcctagcggcgcagcttgttgctcgcttgccttcta 237  Q
    ||||| || || ||||||| |||||||  |||||| ||||||    
T  9601127 aaaaa-gcttaacggcgcaacttgttgtccgcttgtcttcta 9601087  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #46
Raw Score: 30; E-Value: 0.0000002
Query Start/End: Original strand, 180 - 237
Target Start/End: Complemental strand, 12053401 - 12053344
Alignment:
Q  180 attggttttaccatccaaaaaggcctagcggcgcagcttgttgctcgcttgccttcta 237  Q
    ||||||||| ||||| ||||||||| |||| ||||||||||||   ||||||||||||    
T  12053401 attggttttgccatcgaaaaaggccgagcgacgcagcttgttgtctgcttgccttcta 12053344  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #47
Raw Score: 30; E-Value: 0.0000002
Query Start/End: Original strand, 132 - 237
Target Start/End: Complemental strand, 16009347 - 16009244
Alignment:
Q  132 catagcaatgtcatgtctcctaggtttatgaatgttgtgcttgcgatgattggttttaccatccaaaaaggcctagcggcgcagcttgttgctcgcttgc 231  Q
    ||||||||||| |||||  || ||| ||||||||| ||| ||  ||||||||||||| | ||  |||||||  |||||||||||||||||||  ||||||    
T  16009347 catagcaatgttatgtccgctcggtctatgaatgt-gtgtttaagatgattggttttgcgataaaaaaaggt-tagcggcgcagcttgttgcctgcttgc 16009250  T
Q  232 cttcta 237  Q
    ||||||    
T  16009249 cttcta 16009244  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #48
Raw Score: 30; E-Value: 0.0000002
Query Start/End: Original strand, 89 - 142
Target Start/End: Original strand, 43849430 - 43849483
Alignment:
Q  89 accagaggttgttgaccttctacatagagttcaaagggtcatgcatagcaatgt 142  Q
    |||| ||||||| || |||||||| |||||||||| ||||||||||| ||||||    
T  43849430 accaaaggttgtggatcttctacaaagagttcaaatggtcatgcataacaatgt 43849483  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #49
Raw Score: 29; E-Value: 0.0000008
Query Start/End: Original strand, 179 - 223
Target Start/End: Complemental strand, 2852370 - 2852326
Alignment:
Q  179 gattggttttaccatccaaaaaggcctagcggcgcagcttgttgc 223  Q
    ||||||||||  ||| ||||||||| |||||||||||||||||||    
T  2852370 gattggttttttcattcaaaaaggcttagcggcgcagcttgttgc 2852326  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #50
Raw Score: 29; E-Value: 0.0000008
Query Start/End: Original strand, 85 - 125
Target Start/End: Complemental strand, 23605100 - 23605060
Alignment:
Q  85 tagcaccagaggttgttgaccttctacatagagttcaaagg 125  Q
    ||||| || ||||||||||||||||| ||||||||||||||    
T  23605100 tagcatcaaaggttgttgaccttctatatagagttcaaagg 23605060  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #51
Raw Score: 29; E-Value: 0.0000008
Query Start/End: Original strand, 66 - 154
Target Start/End: Original strand, 49344198 - 49344286
Alignment:
Q  66 tttgacactttcaatttcgtagcaccagaggttgttgaccttctacatagagttcaaagggtcatgcatagcaatgtcatgtctcctag 154  Q
    |||||||||||   |||| ||| |||| ||||  ||||||| ||||||| |||| |||||||||  ||||| ||||| |||||||||||    
T  49344198 tttgacacttttgttttcctaggaccaaaggtaattgacctcctacatatagtttaaagggtcactcatagaaatgtaatgtctcctag 49344286  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #52
Raw Score: 29; E-Value: 0.0000008
Query Start/End: Original strand, 101 - 153
Target Start/End: Original strand, 49354160 - 49354212
Alignment:
Q  101 tgaccttctacatagagttcaaagggtcatgcatagcaatgtcatgtctccta 153  Q
    ||||||||| |||||| || ||| |||||| ||||||||||| ||||||||||    
T  49354160 tgaccttctgcatagaatttaaatggtcattcatagcaatgtaatgtctccta 49354212  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5 (Bit Score: 100; Significance: 4e-49; HSPs: 36)
Name: chr5
Description:

Target: chr5; HSP #1
Raw Score: 100; E-Value: 4e-49
Query Start/End: Original strand, 27 - 237
Target Start/End: Original strand, 32269819 - 32270026
Alignment:
Q  27 gtgttctgacaatcaacatatgcttttataacatctgcttttgacactttcaatttcgtagcaccagaggttgttgaccttctacatagagttcaaaggg 126  Q
    ||||||||||||||||||   ||||||||| ||| ||||||||| |||||| ||||| |||||| |||||||||||||||||| |||  |||||||| ||    
T  32269819 gtgttctgacaatcaacac--gcttttataccatttgcttttgatactttcgatttcctagcactagaggttgttgaccttctgcatgaagttcaaaagg 32269916  T
Q  127 tcatgcatagcaatgtcatgtctcctaggtttatgaatgttgtgcttgcgatgattggttttaccatccaaaaaggcctagcggcgcagcttgttgctcg 226  Q
    ||||||||||||||||||||||||||||||  |||||||||||| || ||| ||||| |||  ||||||||||| || |||||| |||||||||| | ||    
T  32269917 tcatgcatagcaatgtcatgtctcctaggtccatgaatgttgtgtttacgaggattgatttcgccatccaaaaaagcatagcgg-gcagcttgttacccg 32270015  T
Q  227 cttgccttcta 237  Q
    |||||||||||    
T  32270016 cttgccttcta 32270026  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #2
Raw Score: 96; E-Value: 9e-47
Query Start/End: Original strand, 27 - 237
Target Start/End: Complemental strand, 42921782 - 42921575
Alignment:
Q  27 gtgttctgacaatcaacatatgcttttataacatctgcttttgacactttcaatttcgtagcaccagaggttgttgaccttctacatagagttcaaaggg 126  Q
    |||||||||||||||||||  ||||||||| ||| ||||| ||||||||||  |||| |||||||||||||||||| |||||||||||||||||| | ||    
T  42921782 gtgttctgacaatcaacat--gcttttataccatttgcttatgacactttcggtttcctagcaccagaggttgttggccttctacatagagttcagaagg 42921685  T
Q  127 tcatgcatagcaatgtcatgtctcctaggtttatgaatgttgtgcttgcgatgattggttttaccatccaaaaaggcctagcggcgcagcttgttgctcg 226  Q
    ||||||||| ||||||||||||||||| ||  || ||| ||||| || | | |||||||||| ||||||||||||  |||||||||||||||||| | |     
T  42921684 tcatgcataacaatgtcatgtctcctaagtccat-aatattgtgtttacaaggattggttttgccatccaaaaagatctagcggcgcagcttgtttccca 42921586  T
Q  227 cttgccttcta 237  Q
    |||||||||||    
T  42921585 cttgccttcta 42921575  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #3
Raw Score: 92; E-Value: 2e-44
Query Start/End: Original strand, 27 - 221
Target Start/End: Original strand, 37873660 - 37873852
Alignment:
Q  27 gtgttctgacaatcaacatatgcttttataacatctgcttttgacactttcaatttcgtagcaccagaggttgttgaccttctacatagagttcaaaggg 126  Q
    ||||||||||||||||||| |  ||||||| ||| |||||||||||||||    ||| ||||||||||||||||||||||||||||||||||||||||||    
T  37873660 gtgttctgacaatcaacatgt--ttttataccatttgcttttgacacttttggcttcctagcaccagaggttgttgaccttctacatagagttcaaaggg 37873757  T
Q  127 tcatgcatagcaatgtcatgtctcctaggtttatgaatgttgtgcttgcgatgattggttttaccatccaaaaaggcctagcggcgcagcttgtt 221  Q
    ||||||| | |||||||||| || |||||| ||||||||||||| ||  || ||||| |||| | ||| ||||||||||||||| ||| ||||||    
T  37873758 tcatgcagaacaatgtcatgacttctaggtctatgaatgttgtgtttaagaggattgattttgctatcaaaaaaggcctagcggtgcaacttgtt 37873852  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #4
Raw Score: 88; E-Value: 5e-42
Query Start/End: Original strand, 27 - 233
Target Start/End: Original strand, 13166932 - 13167136
Alignment:
Q  27 gtgttctgacaatcaacatatgcttttataacatctgcttttgacactttcaatttcgtagcaccagaggttgttgaccttctacatagagttcaaaggg 126  Q
    |||||||||||||||||||  ||||||||| ||| ||||||||||||||||   ||| ||||| |||||  ||||||||||||||||||||| |||||||    
T  13166932 gtgttctgacaatcaacat--gcttttataccatttgcttttgacactttcggcttcctagcatcagagactgttgaccttctacatagagtccaaaggg 13167029  T
Q  127 tcatgcatagcaatgtcatgtctcctaggtttatgaatgttgtgcttgcgatgattggttttaccatccaaaaaggcctagcggcgcagcttgttgctcg 226  Q
    | |||||||||||||  |||||||||||||  |||||||||| | || ||||||||| || |   ||||||||||  |||||||||||||||||||| |     
T  13167030 ttatgcatagcaatggtatgtctcctaggtccatgaatgttgggtttacgatgattgattctgttatccaaaaagatctagcggcgcagcttgttgccca 13167129  T
Q  227 cttgcct 233  Q
    |||||||    
T  13167130 cttgcct 13167136  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #5
Raw Score: 87; E-Value: 2e-41
Query Start/End: Original strand, 28 - 233
Target Start/End: Complemental strand, 35310532 - 35310329
Alignment:
Q  28 tgttctgacaatcaacatatgcttttataacatctgcttttgacactttcaatttcgtagcaccagaggttgttgaccttctacatagagttcaaagggt 127  Q
    ||||||||||||||||||  ||||||||| ||||||||||||||||||||   ||| | ||| |||||| |||| |||||||||||||||| ||||||||    
T  35310532 tgttctgacaatcaacat--gcttttataccatctgcttttgacactttcggcttcctggcatcagaggctgttaaccttctacatagagtccaaagggt 35310435  T
Q  128 catgcatagcaatgtcatgtctcctaggtttatgaatgttgtgcttgcgatgattggttttaccatccaaaaaggcctagcggcgcagcttgttgctcgc 227  Q
      |||||| |||||| |||||||||||||  |||||||||||| || |||  ||||||||| ||||||||| |||  || || ||||||||||||| |||    
T  35310434 tttgcatatcaatgttatgtctcctaggtccatgaatgttgtgtttacgagaattggttttgccatccaaagaggtttaacgacgcagcttgttgcccgc 35310335  T
Q  228 ttgcct 233  Q
    ||||||    
T  35310334 ttgcct 35310329  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #6
Raw Score: 84; E-Value: 1e-39
Query Start/End: Original strand, 27 - 233
Target Start/End: Original strand, 25663054 - 25663258
Alignment:
Q  27 gtgttctgacaatcaacatatgcttttataacatctgcttttgacactttcaatttcgtagcaccagaggttgttgaccttctacatagagttcaaaggg 126  Q
    ||||||||| ||||||||| |  ||||||| ||| |||||||||||||||||  ||| ||||| |||| |||||||| |||||||||||||| |||||||    
T  25663054 gtgttctgataatcaacatgt--ttttataccatttgcttttgacactttcagcttcctagcatcagaagttgttgatcttctacatagagtccaaaggg 25663151  T
Q  127 tcatgcatagcaatgtcatgtctcctaggtttatgaatgttgtgcttgcgatgattggttttaccatccaaaaaggcctagcggcgcagcttgttgctcg 226  Q
    | ||||||| |||||| ||||| |||||||  |||||||||| | || ||| |||||| |||  |||||||||||| ||| || ||||||||||||||||    
T  25663152 ttatgcatatcaatgttatgtcccctaggtccatgaatgttgagtttacgaggattggctttgtcatccaaaaaggtctaacgacgcagcttgttgctcg 25663251  T
Q  227 cttgcct 233  Q
     ||||||    
T  25663252 tttgcct 25663258  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #7
Raw Score: 78; E-Value: 5e-36
Query Start/End: Original strand, 28 - 220
Target Start/End: Complemental strand, 430686 - 430496
Alignment:
Q  28 tgttctgacaatcaacatatgcttttataacatctgcttttgacactttcaatttcgtagcaccagaggttgttgaccttctacatagagttcaaagggt 127  Q
    ||||||||||||||||||  ||||||||| ||| |||||||||||||||    ||| ||||| ||||||  |||||||||||||||||| | ||||||||    
T  430686 tgttctgacaatcaacat--gcttttataccatttgcttttgacacttttgtcttcatagcatcagaggcagttgaccttctacatagattccaaagggt 430589  T
Q  128 catgcatagcaatgtcatgtctcctaggtttatgaatgttgtgcttgcgatgattggttttaccatccaaaaaggcctagcggcgcagcttgt 220  Q
     |||||||| ||||| |||||||||||||  |||||||||||| || ||| ||||| || | ||||||||||||| ||| ||| |||||||||    
T  430588 tatgcatagtaatgttatgtctcctaggtccatgaatgttgtgtttacgaggattgattatgccatccaaaaaggtctatcggtgcagcttgt 430496  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #8
Raw Score: 77; E-Value: 2e-35
Query Start/End: Original strand, 27 - 233
Target Start/End: Original strand, 33692077 - 33692278
Alignment:
Q  27 gtgttctgacaatcaacatatgcttttataacatctgcttttgacactttcaatttcgtagcaccagaggttgttgaccttctacatagagttcaaaggg 126  Q
    ||||| |||||||||||||  |||||| || ||| ||||||||||||||||   ||| ||||| |||||  |||||||||||||||||| || |||||||    
T  33692077 gtgttatgacaatcaacat--gcttttgtaccatttgcttttgacactttcggcttcttagcatcagagactgttgaccttctacatagtgtccaaaggg 33692174  T
Q  127 tcatgcatagcaatgtcatgtctcctaggtttatgaatgttgtgcttgcgatgattggttttaccatccaaaaaggcctagcggcgcagcttgttgctcg 226  Q
    | ||||||| |||||| ||||||| |||||| ||||||||| || || ||||  |||||||| ||||||||||||  ||||||||||||||||||||  |    
T  33692175 t-atgcataacaatgttatgtctcataggttcatgaatgttctgtttacgat--ttggtttttccatccaaaaagatctagcggcgcagcttgttgcctg 33692271  T
Q  227 cttgcct 233  Q
    |||||||    
T  33692272 cttgcct 33692278  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #9
Raw Score: 76; E-Value: 7e-35
Query Start/End: Original strand, 65 - 200
Target Start/End: Original strand, 22188713 - 22188848
Alignment:
Q  65 ttttgacactttcaatttcgtagcaccagaggttgttgaccttctacatagagttcaaagggtcatgcatagcaatgtcatgtctcctaggtttatgaat 164  Q
    ||||||||||||| ||||  |||||||||||| |||||||||||||||||||||||||| ||||||||||| |||| ||||||||||||| || ||||||    
T  22188713 ttttgacactttcgattttttagcaccagaggctgttgaccttctacatagagttcaaaaggtcatgcataacaatatcatgtctcctagattcatgaat 22188812  T
Q  165 gttgtgcttgcgatgattggttttaccatccaaaaa 200  Q
    |||||| || |||  |||||||||  ||||||||||    
T  22188813 gttgtgtttacgagaattggttttgtcatccaaaaa 22188848  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #10
Raw Score: 73; E-Value: 5e-33
Query Start/End: Original strand, 106 - 234
Target Start/End: Original strand, 2566194 - 2566322
Alignment:
Q  106 ttctacatagagttcaaagggtcatgcatagcaatgtcatgtctcctaggtttatgaatgttgtgcttgcgatgattggttttaccatccaaaaaggcct 205  Q
    |||||||||||||||||| |||||||||||||||||||||||||||||| |  || ||||||||| || ||| ||||| |||| ||||||||||||| ||    
T  2566194 ttctacatagagttcaaaaggtcatgcatagcaatgtcatgtctcctagatccatcaatgttgtgtttacgaggattgattttgccatccaaaaaggtct 2566293  T
Q  206 agcggcgcagcttgttgctcgcttgcctt 234  Q
    ||||||||| |||||||| | ||||||||    
T  2566294 agcggcgcaacttgttgcccacttgcctt 2566322  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #11
Raw Score: 69; E-Value: 1e-30
Query Start/End: Original strand, 46 - 222
Target Start/End: Complemental strand, 8100620 - 8100446
Alignment:
Q  46 atgcttttataacatctgcttttgacactttcaatttcgtagcaccagaggttgttgaccttctacatagagttcaaagggtcatgcatagcaatgtcat 145  Q
    ||||||||||| ||| || || |||||||||||| ||| |  ||| |||||||||||||||||||| ||||||| ||||  ||||||||| |||||||||    
T  8100620 atgcttttataccatttgtttgtgacactttcaacttccttccactagaggttgttgaccttctacgtagagtttaaagattcatgcatatcaatgtcat 8100521  T
Q  146 gtctcctaggtttatgaatgttgtgcttgcgatgattggttttaccatccaaaaaggcctagcggcgcagcttgttg 222  Q
    |||| ||||| |  | ||||||||  |||||||||||| |||| ||||||||||| |||||| ||||||||||||||    
T  8100520 gtcttctagg-tcgtaaatgttgt-tttgcgatgattgattttgccatccaaaaaagcctagtggcgcagcttgttg 8100446  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #12
Raw Score: 69; E-Value: 1e-30
Query Start/End: Original strand, 27 - 186
Target Start/End: Complemental strand, 38875723 - 38875567
Alignment:
Q  27 gtgttctgacaatcaacatatgcttttataacatctgcttttgacactttcaatttcgtagcaccagaggttgttgaccttctacatagagttcaaaggg 126  Q
    ||||||||||||||||||| |  |||| || ||| || ||||||||||||||  ||| |||||||||||| || ||||||||||| ||||||||||| ||    
T  38875723 gtgttctgacaatcaacatgt--ttttgtaccatttgtttttgacactttcagcttcctagcaccagaggctgctgaccttctacgtagagttcaaaagg 38875626  T
Q  127 tcatgcatagcaatgtcatgtctcctaggtttatgaatgttgtgcttgcgatgattggtt 186  Q
    ||||||||| ||||||| ||||||||||||  ||| |||||||| || ||||||||||||    
T  38875625 tcatgcataacaatgtcttgtctcctaggtcaatg-atgttgtgtttacgatgattggtt 38875567  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #13
Raw Score: 68; E-Value: 4e-30
Query Start/End: Original strand, 27 - 237
Target Start/End: Original strand, 15292048 - 15292255
Alignment:
Q  27 gtgttctgacaatcaacatatgcttttataacatctgcttttgacactttcaatttcgtagcaccagaggttgttgaccttctacatagagttcaaaggg 126  Q
    ||||||||||||||||||| |  |||||||  || || |||| ||||||| | |||  |||||| ||||||| |||| |||||||| | |||||||| ||    
T  15292048 gtgttctgacaatcaacatgt--ttttatacaatttgttttttacacttttagttttctagcactagaggttattgatcttctacaaa-agttcaaaagg 15292144  T
Q  127 tcatgcatagcaatgtcatgtctcctaggtttatgaatgttgtgcttgcgatgattggttttaccatccaaaaaggcctagcggcgcagcttgttgctcg 226  Q
    ||||||||||||||||||  ||||||||||  |||||||||||| ||  || ||||| |||| ||||||||||| || | ||||||||| ||||||| |     
T  15292145 tcatgcatagcaatgtcacatctcctaggtccatgaatgttgtgtttatgaggattgattttgccatccaaaaaagcttggcggcgcagtttgttgccca 15292244  T
Q  227 cttgccttcta 237  Q
    |||||||||||    
T  15292245 cttgccttcta 15292255  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #14
Raw Score: 59; E-Value: 1e-24
Query Start/End: Original strand, 113 - 235
Target Start/End: Original strand, 15506721 - 15506843
Alignment:
Q  113 tagagttcaaagggtcatgcatagcaatgtcatgtctcctaggtttatgaatgttgtgcttgcgatgattggttttaccatccaaaaaggcctagcggcg 212  Q
    ||||||| ||| ||| ||| ||||||||||||||||||||||   || |||||||||| || ||| ||||| |||||||||| ||||||||||| |||||    
T  15506721 tagagtttaaaaggttatgtatagcaatgtcatgtctcctagacctacgaatgttgtgtttacgaggattgattttaccatcaaaaaaggcctaacggcg 15506820  T
Q  213 cagcttgttgctcgcttgccttc 235  Q
    || ||||||||||| ||||||||    
T  15506821 caacttgttgctcgtttgccttc 15506843  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #15
Raw Score: 56; E-Value: 6e-23
Query Start/End: Original strand, 62 - 237
Target Start/End: Original strand, 23423926 - 23424101
Alignment:
Q  62 tgcttttgacactttcaatttcgtagcaccagaggttgttgaccttctacatagagttcaaagggtcatgcatagcaatgtcatgtctcctaggtttatg 161  Q
    |||||||||||||||||| ||| || || || | ||||||||||||||||||||| |||||||| |||| ||| |||||||||||| |||||  | |||     
T  23423926 tgcttttgacactttcaacttcctaacatcaaatgttgttgaccttctacatagatttcaaaggatcattcattgcaatgtcatgtatcctacttctatc 23424025  T
Q  162 aatgttgtgcttgcgatgattggttttaccatccaaaaaggcctagcggcgcagcttgttgctcgcttgccttcta 237  Q
    ||| ||||| ||  || ||||| ||||  |||||||||| | ||| ||| |||||||| | |||| ||||||||||    
T  23424026 aatattgtgtttatgaagattgattttgtcatccaaaaatgtctatcggtgcagcttgattctcgtttgccttcta 23424101  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #16
Raw Score: 56; E-Value: 6e-23
Query Start/End: Original strand, 27 - 237
Target Start/End: Complemental strand, 34335422 - 34335214
Alignment:
Q  27 gtgttctgacaatcaacatatgcttttataacatctgcttttgacactttcaatttcgtagcaccagaggttgttgaccttctacatagagttcaaaggg 126  Q
    |||| ||||||||||||||  ||||||||| ||| || ||||||||||||| | ||  |  ||||||||| ||||||||||||||||||||||||| ||     
T  34335422 gtgtcctgacaatcaacat--gcttttataccatttgtttttgacactttcgactttctgacaccagaggctgttgaccttctacatagagttcaacgga 34335325  T
Q  127 tcatgcatagcaatgtcatgtctcctaggtttatgaatgttgtgcttgcgatgattggttttaccatccaaaaaggcctagcggcgcagcttgttgctcg 226  Q
    |||||| || |||| |||||||||||||    || ||| ||||| || ||||||||| ||||  || | |||||  ||||||||| || |||||| | ||    
T  34335324 tcatgcgtaacaatctcatgtctcctagacccataaatattgtgtttacgatgattgattttgtcacctaaaaacacctagcggcacaacttgttacccg 34335225  T
Q  227 cttgccttcta 237  Q
    ||||| |||||    
T  34335224 cttgcattcta 34335214  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #17
Raw Score: 53; E-Value: 4e-21
Query Start/End: Original strand, 118 - 214
Target Start/End: Complemental strand, 23023591 - 23023495
Alignment:
Q  118 ttcaaagggtcatgcatagcaatgtcatgtctcctaggtttatgaatgttgtgcttgcgatgattggttttaccatccaaaaaggcctagcggcgca 214  Q
    |||||| ||||||||||| ||||||||||||||||||||  |||||||||||| || ||| ||||| ||||  ||||||||||||||||| ||||||    
T  23023591 ttcaaaaggtcatgcatatcaatgtcatgtctcctaggtcgatgaatgttgtgtttacgaagattgattttgtcatccaaaaaggcctaggggcgca 23023495  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #18
Raw Score: 51; E-Value: 6e-20
Query Start/End: Original strand, 27 - 215
Target Start/End: Complemental strand, 27336778 - 27336594
Alignment:
Q  27 gtgttctgacaatcaacatatgcttttataacatctgcttttgacactttcaatttcgtagcaccagaggttgttgaccttctacatagagttcaaaggg 126  Q
    ||||||||||||||||||||  |||||||| ||| ||||||||||||||     ||| ||||| ||||||  |||||||||||||||||||   ||| ||    
T  27336778 gtgttctgacaatcaacata--cttttataccatttgcttttgacacttgtggcttcctagcatcagaggcagttgaccttctacatagaga--aaatgg 27336683  T
Q  127 tcatgcatagcaatgtcatgtctcctaggtttatgaatgttgtgcttgcgatgattggttttaccatccaaaaaggcctagcggcgcag 215  Q
    | ||| |||||||||| |||||||||| ||  |||||||||||  || | | ||||| |||| ||||| ||||||| ||||||| ||||    
T  27336682 ttatgtatagcaatgttatgtctcctaagtccatgaatgttgtttttacaaggattgattttgccatcaaaaaaggtctagcggtgcag 27336594  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #19
Raw Score: 49; E-Value: 1e-18
Query Start/End: Original strand, 30 - 169
Target Start/End: Original strand, 26212608 - 26212745
Alignment:
Q  30 ttctgacaatcaacatatgcttttataacatctgcttttgacactttcaatttcgtagcaccagaggttgttgaccttctacatagagttcaaagggtca 129  Q
    ||||||| ||||||||  ||||||||| ||| || |||| || |||||| |||| |||||||||||| | || |||||||||||||||||||||  ||||    
T  26212608 ttctgacgatcaacat--gcttttataccatttgttttttaccctttcagtttcttagcaccagaggctattaaccttctacatagagttcaaaatgtca 26212705  T
Q  130 tgcatagcaatgtcatgtctcctaggtttatgaatgttgt 169  Q
    || || ||||| | |||||||||| ||  |||||||||||    
T  26212706 tgtatggcaatattatgtctcctaagtccatgaatgttgt 26212745  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #20
Raw Score: 48; E-Value: 4e-18
Query Start/End: Original strand, 27 - 156
Target Start/End: Complemental strand, 14423763 - 14423643
Alignment:
Q  27 gtgttctgacaatcaacatatgcttttataacatctgcttttgacactttcaatttcgtagcaccagaggttgttgaccttctacatagagttcaaaggg 126  Q
    |||||||||||||||||||  ||||||||| ||| ||||||||||||||||    || ||||| |||||| ||||||||||||||||||||||   | ||    
T  14423763 gtgttctgacaatcaacat--gcttttataccatttgcttttgacactttc----tcctagcatcagaggctgttgaccttctacatagagtt---aagg 14423673  T
Q  127 tcatgcatagcaatgtcatgtctcctaggt 156  Q
    | || |||| |||||||||||||| |||||    
T  14423672 taattcataacaatgtcatgtctcttaggt 14423643  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #21
Raw Score: 45; E-Value: 2e-16
Query Start/End: Original strand, 179 - 235
Target Start/End: Complemental strand, 11005813 - 11005757
Alignment:
Q  179 gattggttttaccatccaaaaaggcctagcggcgcagcttgttgctcgcttgccttc 235  Q
    |||||||||| |||||||||||||| ||||||||||||||||||| |||||||||||    
T  11005813 gattggttttgccatccaaaaaggcttagcggcgcagcttgttgcccgcttgccttc 11005757  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #22
Raw Score: 40; E-Value: 0.0000000000002
Query Start/End: Original strand, 94 - 201
Target Start/End: Complemental strand, 19260324 - 19260217
Alignment:
Q  94 aggttgttgaccttctacatagagttcaaagggtcatgcatagcaatgtcatgtctcctaggtttatgaatgttgtgcttgcgatgattggttttaccat 193  Q
    ||||| |||||||||||| |||||||||||||||||| |||| |||||| ||||||  ||  || ||||||||| || || |||||||| ||||| |  |    
T  19260324 aggttattgaccttctacttagagttcaaagggtcatacataacaatgtaatgtcttatatattcatgaatgttatgtttacgatgatttgtttttcggt 19260225  T
Q  194 ccaaaaag 201  Q
    ||||||||    
T  19260224 ccaaaaag 19260217  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #23
Raw Score: 40; E-Value: 0.0000000000002
Query Start/End: Original strand, 27 - 133
Target Start/End: Original strand, 43115479 - 43115583
Alignment:
Q  27 gtgttctgacaatcaacatatgcttttataacatctgcttttgacactttcaatttcgtagcaccagaggttgttgaccttctacatagagttcaaaggg 126  Q
    ||||| |||||||||||||  ||||| ||| ||| ||||||||||||||   | |||||| |||||||| ||||||||||||||| ||||||| ||| |     
T  43115479 gtgttttgacaatcaacat--gctttcatagcatttgcttttgacacttctgacttcgtaacaccagagattgttgaccttctacgtagagtttaaatga 43115576  T
Q  127 tcatgca 133  Q
    |||||||    
T  43115577 tcatgca 43115583  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #24
Raw Score: 39; E-Value: 0.0000000000009
Query Start/End: Original strand, 66 - 166
Target Start/End: Complemental strand, 15833107 - 15833010
Alignment:
Q  66 tttgacactttcaatttcgtagcaccagaggttgttgaccttctacatagagttcaaagggtcatgcatagcaatgtcatgtctcctaggtttatgaatg 165  Q
    |||||||||||  | ||| |||||||||| ||||||||   |||| |||||||||||| ||||||| ||| |||||||| ||||||||| || |||||||    
T  15833107 tttgacacttttgacttcctagcaccagatgttgttga---tctatatagagttcaaatggtcatgtataacaatgtcacgtctcctagattcatgaatg 15833011  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #25
Raw Score: 39; E-Value: 0.0000000000009
Query Start/End: Original strand, 27 - 124
Target Start/End: Complemental strand, 43129619 - 43129524
Alignment:
Q  27 gtgttctgacaatcaacatatgcttttataacatctgcttttgacactttcaatttcgtagcaccagaggttgttgaccttctacatagagttcaaag 124  Q
    ||||||||||||||||||| |  |||| || ||| ||||||||||| ||||  |||| || ||||||| ||| ||||||||||||| |||||||||||    
T  43129619 gtgttctgacaatcaacatgt--ttttctaccatttgcttttgacattttcggtttcctaacaccagatgtttttgaccttctacagagagttcaaag 43129524  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #26
Raw Score: 38; E-Value: 0.000000000004
Query Start/End: Original strand, 85 - 149
Target Start/End: Original strand, 41343516 - 41343581
Alignment:
Q  85 tagcaccagaggttgttgaccttctacat-agagttcaaagggtcatgcatagcaatgtcatgtct 149  Q
    |||||||||||||||||| |||||||||| | |||||||||| ||||||||| |||| ||||||||    
T  41343516 tagcaccagaggttgttggccttctacataatagttcaaaggatcatgcataacaatatcatgtct 41343581  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #27
Raw Score: 37; E-Value: 0.00000000001
Query Start/End: Original strand, 30 - 145
Target Start/End: Original strand, 14723269 - 14723382
Alignment:
Q  30 ttctgacaatcaacatatgcttttataacatctgcttttgacactttcaatttcgtagcaccagaggttgttgaccttctacatagagttcaaagggtca 129  Q
    ||||||||||||||||  ||||||||| ||| || |||| |||||||   |||  ||||| ||||||||||||||||| ||| || ||||||||  ||||    
T  14723269 ttctgacaatcaacat--gcttttatatcatttgttttttacacttttggttttttagcatcagaggttgttgaccttatacttaaagttcaaaatgtca 14723366  T
Q  130 tgcatagcaatgtcat 145  Q
    |||||| |||| ||||    
T  14723367 tgcataacaatatcat 14723382  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #28
Raw Score: 37; E-Value: 0.00000000001
Query Start/End: Original strand, 85 - 129
Target Start/End: Complemental strand, 27294467 - 27294423
Alignment:
Q  85 tagcaccagaggttgttgaccttctacatagagttcaaagggtca 129  Q
    |||||||||||||||||||||||||||||| |||||||| |||||    
T  27294467 tagcaccagaggttgttgaccttctacatatagttcaaatggtca 27294423  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #29
Raw Score: 36; E-Value: 0.00000000005
Query Start/End: Original strand, 114 - 161
Target Start/End: Complemental strand, 16017173 - 16017126
Alignment:
Q  114 agagttcaaagggtcatgcatagcaatgtcatgtctcctaggtttatg 161  Q
    |||||||||| ||||||||||||||||||  |||||||||||||||||    
T  16017173 agagttcaaaaggtcatgcatagcaatgttgtgtctcctaggtttatg 16017126  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #30
Raw Score: 36; E-Value: 0.00000000005
Query Start/End: Original strand, 182 - 237
Target Start/End: Complemental strand, 27913561 - 27913507
Alignment:
Q  182 tggttttaccatccaaaaaggcctagcggcgcagcttgttgctcgcttgccttcta 237  Q
    |||||||||||||||| ||  ||||||||||||||||||||| |||||||||||||    
T  27913561 tggttttaccatccaacaaa-cctagcggcgcagcttgttgcccgcttgccttcta 27913507  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #31
Raw Score: 35; E-Value: 0.0000000002
Query Start/End: Original strand, 80 - 155
Target Start/End: Complemental strand, 15810081 - 15810008
Alignment:
Q  80 tttcgtagcaccagaggttgttgaccttctacatagagttcaaag-ggtcatgcatagcaatgtcatgtctcctagg 155  Q
    |||| |||||| |||||||||||||||   | ||||||||||||  ||||||| |||||||||||||||||||||||    
T  15810081 tttcctagcacgagaggttgttgacct---atatagagttcaaaatggtcatgtatagcaatgtcatgtctcctagg 15810008  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #32
Raw Score: 33; E-Value: 0.000000003
Query Start/End: Original strand, 85 - 149
Target Start/End: Complemental strand, 7716210 - 7716146
Alignment:
Q  85 tagcaccagaggttgttgaccttctacatagagttcaaagggtcatgcatagcaatgtcatgtct 149  Q
    ||||||||||||||||||  ||| |||||| |||||||||| | ||||||| |||| ||||||||    
T  7716210 tagcaccagaggttgttggtcttttacataaagttcaaaggattatgcataacaatatcatgtct 7716146  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #33
Raw Score: 32; E-Value: 0.00000001
Query Start/End: Original strand, 88 - 127
Target Start/End: Complemental strand, 16598932 - 16598893
Alignment:
Q  88 caccagaggttgttgaccttctacatagagttcaaagggt 127  Q
    ||||| ||| ||||||||||||||||||||||||||||||    
T  16598932 caccaaaggatgttgaccttctacatagagttcaaagggt 16598893  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #34
Raw Score: 29; E-Value: 0.0000008
Query Start/End: Original strand, 185 - 233
Target Start/End: Original strand, 2917539 - 2917587
Alignment:
Q  185 ttttaccatccaaaaaggcctagcggcgcagcttgttgctcgcttgcct 233  Q
    |||| ||||||||||||| |||||||||||| |||||||  ||||||||    
T  2917539 ttttgccatccaaaaaggtctagcggcgcagtttgttgcctgcttgcct 2917587  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #35
Raw Score: 29; E-Value: 0.0000008
Query Start/End: Original strand, 114 - 170
Target Start/End: Original strand, 3114247 - 3114303
Alignment:
Q  114 agagttcaaagggtcatgcatagcaatgtcatgtctcctaggtttatgaatgttgtg 170  Q
    |||||||||||||||||||| | |||||||||  |||| |||| | |||||||||||    
T  3114247 agagttcaaagggtcatgcacaacaatgtcataactccaaggtctgtgaatgttgtg 3114303  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #36
Raw Score: 29; E-Value: 0.0000008
Query Start/End: Original strand, 130 - 238
Target Start/End: Complemental strand, 7143693 - 7143585
Alignment:
Q  130 tgcatagcaatgtcatgtctcctaggtttatgaatgttgtgcttgcgatgattggttttaccatccaaaaaggcctagcggcgcagcttgttgctcgctt 229  Q
    |||||| |||| | |||| || |||| | ||||||||||||| |  ||  |||| |||| ||||  |||||||| ||||||||||| || ||||||| ||    
T  7143693 tgcatatcaatattatgtttcataggctcatgaatgttgtgcatatgacaattgattttgccatttaaaaaggcttagcggcgcagtttattgctcgttt 7143594  T
Q  230 gccttctac 238  Q
    |||||||||    
T  7143593 gccttctac 7143585  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: scaffold0490 (Bit Score: 96; Significance: 9e-47; HSPs: 1)
Name: scaffold0490
Description:

Target: scaffold0490; HSP #1
Raw Score: 96; E-Value: 9e-47
Query Start/End: Original strand, 27 - 169
Target Start/End: Complemental strand, 6419 - 6279
Alignment:
Q  27 gtgttctgacaatcaacatatgcttttataacatctgcttttgacactttcaatttcgtagcaccagaggttgttgaccttctacatagagttcaaaggg 126  Q
    |||||||||||||||||||  |||| |||| ||| ||||||||||||||||| |||| |||||||||||| |||||||||||||||||||||||||| ||    
T  6419 gtgttctgacaatcaacat--gcttctataccatttgcttttgacactttcagtttcctagcaccagaggctgttgaccttctacatagagttcaaaagg 6322  T
Q  127 tcatgcatagcaatgtcatgtctcctaggtttatgaatgttgt 169  Q
    ||||||||||||||||||||||||||||||  |||||||||||    
T  6321 tcatgcatagcaatgtcatgtctcctaggtccatgaatgttgt 6279  T

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Target: scaffold0148 (Bit Score: 92; Significance: 2e-44; HSPs: 1)
Name: scaffold0148
Description:

Target: scaffold0148; HSP #1
Raw Score: 92; E-Value: 2e-44
Query Start/End: Original strand, 27 - 237
Target Start/End: Complemental strand, 33335 - 33127
Alignment:
Q  27 gtgttctgacaatcaacatatgcttttataacatctgcttttgacactttcaatttcgtagcaccagaggttgttgaccttctacatagagttcaaaggg 126  Q
    ||||||||||||||||||| |  ||||||| ||| | ||||||||| ||||  |||| || |||||||||||||||||||||||||||||||||||| ||    
T  33335 gtgttctgacaatcaacatgt--ttttataccatttacttttgacattttcggtttcctaacaccagaggttgttgaccttctacatagagttcaaaagg 33238  T
Q  127 tcatgcatagcaatgtcatgtctcctaggtttatgaatgttgtgcttgcgatgattggttttaccatccaaaaaggcctagcggcgcagcttgttgctcg 226  Q
    |||||||||||||| | |||||||||||||  ||||| || ||| || ||| ||||| ||||  ||||||||||||| | |||| ||||||||||||  |    
T  33237 tcatgcatagcaattttatgtctcctaggtccatgaacgtcgtgtttacgaggattgattttgtcatccaaaaaggcttggcggtgcagcttgttgcctg 33138  T
Q  227 cttgccttcta 237  Q
    |||||||||||    
T  33137 cttgccttcta 33127  T

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Target: scaffold1768 (Bit Score: 64; Significance: 1e-27; HSPs: 1)
Name: scaffold1768
Description:

Target: scaffold1768; HSP #1
Raw Score: 64; E-Value: 1e-27
Query Start/End: Original strand, 46 - 237
Target Start/End: Original strand, 223 - 414
Alignment:
Q  46 atgcttttataacatctgcttttgacactttcaatttcgtagcaccagaggttgttgaccttctacatagagttcaaagggtcatgcatagcaatgtcat 145  Q
    ||||||||||| ||| ||  |||||||||||   |||  ||| |||| |||||||||||||||| |||| ||||||||  ||||| ||||||||||||||    
T  223 atgcttttataccatttgtgtttgacacttttggttttctagtaccaaaggttgttgaccttctgcataaagttcaaaaagtcatacatagcaatgtcat 322  T
Q  146 gtctcctaggtttatgaatgttgtgcttgcgatgattggttttaccatccaaaaaggcctagcggcgcagcttgttgctcgcttgccttcta 237  Q
    ||||||||| |  ||||| |||||| || ||| |||| ||||| |||||||||||||| | | |||||| ||||||||  |||| |||||||    
T  323 gtctcctagatcgatgaacgttgtgtttacgaggattagttttgccatccaaaaaggctttgtggcgcatcttgttgccggctttccttcta 414  T

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Target: scaffold0470 (Bit Score: 64; Significance: 1e-27; HSPs: 1)
Name: scaffold0470
Description:

Target: scaffold0470; HSP #1
Raw Score: 64; E-Value: 1e-27
Query Start/End: Original strand, 27 - 221
Target Start/End: Complemental strand, 7687 - 7496
Alignment:
Q  27 gtgttctgacaatcaacatatgcttttataacatctgcttttgacactttcaatttcgtagcaccagaggttgttgaccttctacatagagttcaaaggg 126  Q
    ||||||| |||||||||||  | ||||| | ||| ||||||||||||||||| |||| |||| |||||| ||||||||||| | ||||| ||||||| ||    
T  7687 gtgttctcacaatcaacat--gattttaaaccatttgcttttgacactttcagtttcctagctccagagattgttgaccttttgcatagcgttcaaaagg 7590  T
Q  127 tcatgcatagcaatgtcatgtctcctaggtttatgaatgttgtgcttgcgatgattggttttaccatccaaaaaggcctagcggcgcagcttgtt 221  Q
    |||||||||  ||||||||||||| |||||  ||||||||| || || |||  |||||||||  |||||||||||  ||| |||| |||||||||    
T  7589 tcatgcata-taatgtcatgtctcataggtccatgaatgttatgtttacgagtattggttttgtcatccaaaaagatctaacggcacagcttgtt 7496  T

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Target: scaffold0031 (Bit Score: 63; Significance: 4e-27; HSPs: 1)
Name: scaffold0031
Description:

Target: scaffold0031; HSP #1
Raw Score: 63; E-Value: 4e-27
Query Start/End: Original strand, 27 - 237
Target Start/End: Complemental strand, 49496 - 49292
Alignment:
Q  27 gtgttctgacaatcaacatatgcttttataacatctgcttttgacactttcaatttcgtagcaccagaggttgttgaccttctacatagagttcaaaggg 126  Q
    ||||||||||||||||| |  ||||||||| ||| |||||||||||||||| | ||| || ||||| ||||||  |    || ||||||||||||||||     
T  49496 gtgttctgacaatcaacgt--gcttttataccatttgcttttgacactttcgacttcttaacaccaaaggttgagg----tcaacatagagttcaaagga 49403  T
Q  127 tcatgcatagcaatgtcatgtctcctaggtttatgaatgttgtgcttgcgatgattggttttaccatccaaaaaggcctagcggcgcagcttgttgctcg 226  Q
    ||||||||| |||||||||||||| || ||  |||||||| ||  || |||  |||| |||| ||||| |||| || ||||||||||| ||||||||| |    
T  49402 tcatgcataacaatgtcatgtctcttatgtccatgaatgtagtatttacgagaattgatttttccatctaaaacggtctagcggcgcaacttgttgctag 49303  T
Q  227 cttgccttcta 237  Q
    |||||||||||    
T  49302 cttgccttcta 49292  T

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Target: scaffold0186 (Bit Score: 52; Significance: 2e-20; HSPs: 1)
Name: scaffold0186
Description:

Target: scaffold0186; HSP #1
Raw Score: 52; E-Value: 2e-20
Query Start/End: Original strand, 22 - 146
Target Start/End: Complemental strand, 10454 - 10329
Alignment:
Q  22 aatgggtgttctgacaatcaac--atatgcttttataacatctgcttttgacactttcaatttcgtagcaccagaggttgttgaccttctacatagagtt 119  Q
    |||| ||||||||||||||||   | ||||||||||| ||| ||||||||||||||     ||| |||||||||||||||||||||||||| ||||||||    
T  10454 aatgcgtgttctgacaatcaatcaacatgcttttataccatttgcttttgacacttgtggcttcctagcaccagaggttgttgaccttcta-atagagtt 10356  T
Q  120 caaagggtcatgcatagcaatgtcatg 146  Q
     |||||| |||||||| ||||||||||    
T  10355 gaaagggccatgcataacaatgtcatg 10329  T

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Target: scaffold0224 (Bit Score: 49; Significance: 1e-18; HSPs: 1)
Name: scaffold0224
Description:

Target: scaffold0224; HSP #1
Raw Score: 49; E-Value: 1e-18
Query Start/End: Original strand, 27 - 142
Target Start/End: Original strand, 18386 - 18499
Alignment:
Q  27 gtgttctgacaatcaacatatgcttttataacatctgcttttgacactttcaatttcgtagcaccagaggttgttgaccttctacatagagttcaaaggg 126  Q
    ||||||| ||||||||||| |  ||||||  |||||||||||||||||||  |||||  ||||  |||| ||||| ||||||||||||||||| ||||||    
T  18386 gtgttctcacaatcaacatgt--ttttatgtcatctgcttttgacacttttgatttccaagcagtagagattgttaaccttctacatagagtttaaaggg 18483  T
Q  127 tcatgcatagcaatgt 142  Q
    ||||||| ||||||||    
T  18484 tcatgcagagcaatgt 18499  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: scaffold0406 (Bit Score: 42; Significance: 0.00000000000001; HSPs: 1)
Name: scaffold0406
Description:

Target: scaffold0406; HSP #1
Raw Score: 42; E-Value: 0.00000000000001
Query Start/End: Original strand, 180 - 237
Target Start/End: Complemental strand, 6822 - 6765
Alignment:
Q  180 attggttttaccatccaaaaaggcctagcggcgcagcttgttgctcgcttgccttcta 237  Q
    ||||||||| ||||||||||||| |||||| ||||||||||||| |||||||||||||    
T  6822 attggttttgccatccaaaaaggtctagcgccgcagcttgttgcccgcttgccttcta 6765  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: scaffold0119 (Bit Score: 41; Significance: 0.00000000000006; HSPs: 1)
Name: scaffold0119
Description:

Target: scaffold0119; HSP #1
Raw Score: 41; E-Value: 0.00000000000006
Query Start/End: Original strand, 80 - 152
Target Start/End: Complemental strand, 16139 - 16068
Alignment:
Q  80 tttcgtagcaccagaggttgttgaccttctacatagagttcaaagggtcatgcatagcaatgtcatgtctcct 152  Q
    |||| |||||||| ||||| ||||| ||||||||||||||||||||||||||||||| ||| |||||| ||||    
T  16139 tttcctagcacca-aggttattgactttctacatagagttcaaagggtcatgcatagtaatatcatgtttcct 16068  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: scaffold0309 (Bit Score: 36; Significance: 0.00000000005; HSPs: 1)
Name: scaffold0309
Description:

Target: scaffold0309; HSP #1
Raw Score: 36; E-Value: 0.00000000005
Query Start/End: Original strand, 190 - 237
Target Start/End: Complemental strand, 5248 - 5201
Alignment:
Q  190 ccatccaaaaaggcctagcggcgcagcttgttgctcgcttgccttcta 237  Q
    ||||||||||||| |||||||||||||||||||| ||||||| |||||    
T  5248 ccatccaaaaaggtctagcggcgcagcttgttgcccgcttgcattcta 5201  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: scaffold0493 (Bit Score: 29; Significance: 0.0000008; HSPs: 1)
Name: scaffold0493
Description:

Target: scaffold0493; HSP #1
Raw Score: 29; E-Value: 0.0000008
Query Start/End: Original strand, 28 - 135
Target Start/End: Original strand, 8539 - 8644
Alignment:
Q  28 tgttctgacaatcaacatatgcttttataacatctgcttttgacactttcaatttcgtagcaccagaggttgttgaccttctacatagagttcaaagggt 127  Q
    |||||||||||||||||| |  ||||||| ||| ||| ||| |||||||   |||| |||||| |||||||||  | ||||| || |||||||||||  |    
T  8539 tgttctgacaatcaacatgt--ttttataccatttgcgtttaacacttttggtttcctagcactagaggttgtgaatcttctgcaaagagttcaaagact 8636  T
Q  128 catgcata 135  Q
    ||||||||    
T  8637 catgcata 8644  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]



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