View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF4601_high_3 (Length: 483)
Name: NF4601_high_3
Description: NF4601
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF4601_high_3 |
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Alignment Details
Target: chr1 (Bit Score: 417; Significance: 0; HSPs: 1)
Name: chr1
Description:
Target: chr1; HSP #1
Raw Score: 417; E-Value: 0
Query Start/End: Original strand, 9 - 433
Target Start/End: Complemental strand, 47395415 - 47394991
Alignment:
| Q |
9 |
gagaagaaagtatttatttctttttcacacaaattaaagttaattaaatacctagctagatgcttaacgaacaagaaaaccagccgtttcttttgccaag |
108 |
Q |
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|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||||||||||||| |
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| T |
47395415 |
gagaagaaagtatttatttctttttcacacaaattaaagttaattaaatacctagctagatgcttaacgaacaagaaaaccagctgtttcttttgccaag |
47395316 |
T |
|
| Q |
109 |
aggccacaaactccactctaatgtgcatcccaattggcctccaaactctttctcacttacgtcgtttcctttatacacatggcataataatagtggtttt |
208 |
Q |
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| T |
47395315 |
aggccacaaactccactctaatgtgcatcccaattggcctccaaactctttctcacttacgtcgtttcctttatacacatggcataataatagtggtttt |
47395216 |
T |
|
| Q |
209 |
tatttggcattttggattagatcaaattcaatgacttcgtggattgcatatatatacttacttggtttttcttaggaaacaattataatccaggctaacg |
308 |
Q |
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|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
47395215 |
tatttggcattttggattagatcaaattcaatgacttcgtggattgcatatatatacttacttggtttttcttaggaaacaattataatccaggctaacg |
47395116 |
T |
|
| Q |
309 |
gattctgaagcccacaaattatcttcctttttgtgtttagttttagtcaatggcatcagcaattttaaagttctacgttatacaatcattagtttaggac |
408 |
Q |
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|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||||||||||||||||||||| |
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| T |
47395115 |
gattctgaagcccacaaattatcttcctttttgtgtttagttttagtcaatggcatcagcaattttaaagttctacattatacaatcattagtttaggac |
47395016 |
T |
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| Q |
409 |
tttcttagaaattgaaagttaatgt |
433 |
Q |
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||||||||||||||||||||||||| |
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| T |
47395015 |
tttcttagaaattgaaagttaatgt |
47394991 |
T |
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