View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF4601_low_2 (Length: 568)
Name: NF4601_low_2
Description: NF4601
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF4601_low_2 |
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Alignment Details
Target: chr4 (Bit Score: 137; Significance: 3e-71; HSPs: 3)
Name: chr4
Description:
Target: chr4; HSP #1
Raw Score: 137; E-Value: 3e-71
Query Start/End: Original strand, 189 - 502
Target Start/End: Original strand, 9313817 - 9314113
Alignment:
| Q |
189 |
taagaactttgacaaccacaagggaatccacttgcaactctactgttctaaaattcaacctccttgcaaaattcaatccttccaagactccccacagttc |
288 |
Q |
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| T |
9313817 |
taagaactttgaaaaccacaagggaatccacgtgcaactctactgctctaaaatttaacctccttgcataattcaatccttccaaaactccccacagttc |
9313916 |
T |
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| Q |
289 |
cgccggataagcactcccacacccaatatatttagcaaaaccacctaaccattagcgatcactgcctttaataactcctccacgaacgaaccatatgtgt |
388 |
Q |
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| T |
9313917 |
cgccaactaaacactcccacacccaatatatttagcgaaaccacctaaccattcgccatcattgcctttaataactcttcca---------cat------ |
9314001 |
T |
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| Q |
389 |
tcactgttcacctcaatccaacccactggaggaggtttcctcccaataagcaccaccctacgcgggttcacaatcaccaatctgttagccttatccgcca |
488 |
Q |
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| T |
9314002 |
--cctattcaccttaacccaaccaaccgaaggaggtttccacctaataagcaccaccctatgcgggttctcaatcaccaatctgttagctttatccgcta |
9314099 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4; HSP #2
Raw Score: 66; E-Value: 7e-29
Query Start/End: Original strand, 52 - 371
Target Start/End: Original strand, 26830370 - 26830685
Alignment:
| Q |
52 |
atgattcgctaaagcatatgcacgttgattagcttt-ccattaagagtga--tgcaccgcaatctccgaatccatatctagtaactgacgaatcttcttg |
148 |
Q |
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| T |
26830370 |
atgattcgctaaagcatatggacattgactagcttttccggtaagagtgtggtgcaccacaacctctcagtccatttctattaaccgacgaatcttcttg |
26830469 |
T |
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| Q |
149 |
actaataacccgccactaggacttccaattgcatcaggactaagaactttgacaaccacaagggaatccacttgcaactctactgttctaaaattcaacc |
248 |
Q |
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| T |
26830470 |
actaacgatccaccactaggacttccaattgcattgaaagtaataacattgacaaccacgacggaatccacatacatcttt-------tataattcaacc |
26830562 |
T |
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| Q |
249 |
tccttgcaaaattcaatccttccaagactccccacagttccgccggataagcactcccacacccaatatatttagcaaaaccacctaaccattagcgatc |
348 |
Q |
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| T |
26830563 |
tcctagcataactcaatcactcacaaactccccacaattccgccaaataagcactcccacaaccggtatatttagcaaaaccacctaaccactctccatc |
26830662 |
T |
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| Q |
349 |
actgcctttaataactcctccac |
371 |
Q |
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| T |
26830663 |
actgcttctaataactccaccac |
26830685 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4; HSP #3
Raw Score: 47; E-Value: 1e-17
Query Start/End: Original strand, 508 - 562
Target Start/End: Original strand, 9314168 - 9314222
Alignment:
| Q |
508 |
ttttctttattcctccaactccacaagaaatgacaagccattgcccaaaaactcc |
562 |
Q |
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| T |
9314168 |
ttttccttattcctccaactccacaagaaatgacaagtcattgcccaaaaactcc |
9314222 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr2 (Bit Score: 36; Significance: 0.00000000005; HSPs: 1)
Name: chr2
Description:
Target: chr2; HSP #1
Raw Score: 36; E-Value: 0.00000000005
Query Start/End: Original strand, 509 - 564
Target Start/End: Original strand, 42625751 - 42625806
Alignment:
| Q |
509 |
tttctttattcctccaactccacaagaaatgacaagccattgcccaaaaactcctt |
564 |
Q |
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| T |
42625751 |
tttctttattcctctaactccacaagaaatggcaagacattacccaaaaagtcctt |
42625806 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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