View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF4601_low_4 (Length: 344)
Name: NF4601_low_4
Description: NF4601
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF4601_low_4 |
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| [»] chr2 (2 HSPs) |
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Alignment Details
Target: chr2 (Bit Score: 206; Significance: 1e-112; HSPs: 2)
Name: chr2
Description:
Target: chr2; HSP #1
Raw Score: 206; E-Value: 1e-112
Query Start/End: Original strand, 103 - 344
Target Start/End: Original strand, 15072828 - 15073069
Alignment:
| Q |
103 |
ccttcaattttcttcattctagtcaagactcacaatcatgactaggaaaaaggtgaagctcgccttcattgtcaatgacgctgctcggaaaacaacctat |
202 |
Q |
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| T |
15072828 |
cctttaattttcttcattctagtcaagactaacaatcatgactaggaaaaaggtgaagctcaccttcattgtcaatgacgctgctcagaaagcaacctat |
15072927 |
T |
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| Q |
203 |
aagaaaagaaagaataatttattgaagatggtcgatgaactaagcacgctttgtggtattgaagcatgtgctatagttcaaggttctcatgaacctcaac |
302 |
Q |
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| T |
15072928 |
aaaaaaagaaagaataatttattgaagaaggtcgatgaactaagcacgctttgtggtattgaagcatgtgctatagttcaaggtcctcatgaacctcaac |
15073027 |
T |
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| Q |
303 |
ctcatatttggccatcaccatggggagttcatagggtgctct |
344 |
Q |
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| T |
15073028 |
ctcatatttggccatcatcatggggagttcatagggtgctct |
15073069 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr2; HSP #2
Raw Score: 35; E-Value: 0.0000000001
Query Start/End: Original strand, 306 - 344
Target Start/End: Original strand, 15075828 - 15075866
Alignment:
| Q |
306 |
atatttggccatcaccatggggagttcatagggtgctct |
344 |
Q |
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| T |
15075828 |
atatttggccatcaccatgaggagttcatagggtgctct |
15075866 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr8 (Bit Score: 68; Significance: 3e-30; HSPs: 1)
Name: chr8
Description:
Target: chr8; HSP #1
Raw Score: 68; E-Value: 3e-30
Query Start/End: Original strand, 139 - 330
Target Start/End: Original strand, 13308159 - 13308350
Alignment:
| Q |
139 |
catgactaggaaaaaggtgaagctcgccttcattgtcaatgacgctgctcggaaaacaacctataagaaaagaaagaataatttattgaagatggtcgat |
238 |
Q |
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| T |
13308159 |
catgactagaagaaaggtgaaacttgccttcattgtcaatgacgctgcaagaaaagtaacatacaagaaaaggatgaagggtttattgaagaagattgac |
13308258 |
T |
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| Q |
239 |
gaactaagcacgctttgtggtattgaagcatgtgctatagttcaaggttctcatgaacctcaacctcatatttggccatcaccatggggagt |
330 |
Q |
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| T |
13308259 |
gaactaagcacgctttgtggaattgaagcttgtgctatagtttacggtccttatgaaccacaacctgagatttggccatccccttggggagt |
13308350 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4 (Bit Score: 39; Significance: 0.0000000000005; HSPs: 3)
Name: chr4
Description:
Target: chr4; HSP #1
Raw Score: 39; E-Value: 0.0000000000005
Query Start/End: Original strand, 132 - 322
Target Start/End: Original strand, 10986749 - 10986939
Alignment:
| Q |
132 |
tcacaatcatgactaggaaaaaggtgaagctcgccttcattgtcaatgacgctgctcggaaaacaacctataagaaaagaaagaataatttattgaagat |
231 |
Q |
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| T |
10986749 |
tcacaaccatgactagaagaaaagttaaacttgccttcattgtgaatgatgctgcaaggaaagcaacatacaagaaaagaaagaagggtctattgaaaaa |
10986848 |
T |
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| Q |
232 |
ggtcgatgaactaagcacgctttgtggtattgaagcatgtgctatagttcaaggttctcatgaacctcaacctcatatttggccatcacca |
322 |
Q |
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| T |
10986849 |
ggttgctgaacttagcaccctttgtggaatcgatgcatgtgccatggtttatggcccttatgagcttcaacctgagatttggccatcacca |
10986939 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4; HSP #2
Raw Score: 35; E-Value: 0.0000000001
Query Start/End: Original strand, 164 - 322
Target Start/End: Original strand, 11106491 - 11106649
Alignment:
| Q |
164 |
gccttcattgtcaatgacgctgctcggaaaacaacctataagaaaagaaagaataatttattgaagatggtcgatgaactaagcacgctttgtggtattg |
263 |
Q |
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| T |
11106491 |
gccttcattgtcaatgatgctgctaggaaagcagcatataagaaaaggaagaagagtctattcaaaaaggttgttgaacttagcaccctctgtggtattg |
11106590 |
T |
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| Q |
264 |
aagcatgtgctatagttcaaggttctcatgaacctcaacctcatatttggccatcacca |
322 |
Q |
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| T |
11106591 |
aggcttgtgccatattgtatggcccttatgagcctcatcctgagatttggccatcacca |
11106649 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4; HSP #3
Raw Score: 29; E-Value: 0.0000005
Query Start/End: Original strand, 164 - 216
Target Start/End: Original strand, 11099929 - 11099981
Alignment:
| Q |
164 |
gccttcattgtcaatgacgctgctcggaaaacaacctataagaaaagaaagaa |
216 |
Q |
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| T |
11099929 |
gccttcattgtcaatgatgctgctaggaaagcaacatacaagaaaaggaagaa |
11099981 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr7 (Bit Score: 34; Significance: 0.0000000005; HSPs: 2)
Name: chr7
Description:
Target: chr7; HSP #1
Raw Score: 34; E-Value: 0.0000000005
Query Start/End: Original strand, 236 - 333
Target Start/End: Original strand, 19004115 - 19004212
Alignment:
| Q |
236 |
gatgaactaagcacgctttgtggtattgaagcatgtgctatagttcaaggttctcatgaacctcaacctcatatttggccatcaccatggggagttca |
333 |
Q |
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| T |
19004115 |
gatgaactaagcaccctttgtggaattgaagcttgtgctataatgtatggcccttatgaaccacaacttgagatttggccatcaccaaagggagttca |
19004212 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr7; HSP #2
Raw Score: 31; E-Value: 0.00000003
Query Start/End: Original strand, 236 - 322
Target Start/End: Original strand, 18949791 - 18949877
Alignment:
| Q |
236 |
gatgaactaagcacgctttgtggtattgaagcatgtgctatagttcaaggttctcatgaacctcaacctcatatttggccatcacca |
322 |
Q |
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| T |
18949791 |
gatgaactaagcaccctttgtggaattgaagcttgtgctataatgtatggcccttatgaaccacaacttgagatttggccatcacca |
18949877 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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