View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF4601_low_6 (Length: 326)
Name: NF4601_low_6
Description: NF4601
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF4601_low_6 |
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Alignment Details
Target: chr3 (Bit Score: 260; Significance: 1e-145; HSPs: 1)
Name: chr3
Description:
Target: chr3; HSP #1
Raw Score: 260; E-Value: 1e-145
Query Start/End: Original strand, 22 - 313
Target Start/End: Original strand, 7353430 - 7353721
Alignment:
| Q |
22 |
cgtctattacgactttggatgtgatagccaaatctaaaggcaccgagtcattgccaaactgtgaaaaggaatcaacaatgaagaatgttgaacatttgga |
121 |
Q |
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| T |
7353430 |
cgtctattgcggctttggatgtgatagccaaatctaaaggcactgggtccttgccaaactgtgaaaaggaatcaacaatgaagaatgttgaacatttgga |
7353529 |
T |
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| Q |
122 |
taccgtgaacacaaaccttcatgaggtattgggtgaaaatgaaactttgaatgatgctgctattggtgcatccggttccaatttgaacaatgcaactact |
221 |
Q |
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| T |
7353530 |
taccgtaaacacaaaccttcatgaggtattgggtgaaaatgaaactttgaatgatgctgctattggtgcatccggttccaatttgaacaatgcaactact |
7353629 |
T |
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| Q |
222 |
actgtcatgcctgaaaagtcaagccaacaacacacgcttgcggtattatccaagctccatttgttaatgagacttattgtgtgtagtataat |
313 |
Q |
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| T |
7353630 |
gctgtcatgcctgaaaagtcaagccaacaacacatgcttgcggtattatccaagctccatttgttaatgagacttattgtgtgtagtataat |
7353721 |
T |
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Target: chr1 (Bit Score: 43; Significance: 0.000000000000002; HSPs: 2)
Name: chr1
Description:
Target: chr1; HSP #1
Raw Score: 43; E-Value: 0.000000000000002
Query Start/End: Original strand, 103 - 189
Target Start/End: Original strand, 15493465 - 15493551
Alignment:
| Q |
103 |
agaatgttgaacatttggataccgtgaacacaaaccttcatgaggtattgggtgaaaatgaaactttgaatgatgctgctattggtg |
189 |
Q |
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| T |
15493465 |
agaatgttgaacatttggataccgagaatgcaaacatttctgaggtgttatgtgaaaatgaaactttgaatggtgctactattggtg |
15493551 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr1; HSP #2
Raw Score: 38; E-Value: 0.000000000002
Query Start/End: Original strand, 268 - 313
Target Start/End: Original strand, 31250335 - 31250380
Alignment:
| Q |
268 |
tatccaagctccatttgttaatgagacttattgtgtgtagtataat |
313 |
Q |
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| T |
31250335 |
tatccaatttccatttgttaatgagacttattgtgtgtagtataat |
31250380 |
T |
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