View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF4601_low_7 (Length: 257)
Name: NF4601_low_7
Description: NF4601
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF4601_low_7 |
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Alignment Details
Target: chr2 (Bit Score: 189; Significance: 1e-102; HSPs: 2)
Name: chr2
Description:
Target: chr2; HSP #1
Raw Score: 189; E-Value: 1e-102
Query Start/End: Original strand, 6 - 245
Target Start/End: Original strand, 35397889 - 35398129
Alignment:
| Q |
6 |
gaggcatcatgccacgttgccacctatcgtgccactaaggagttggtacgtaacaatacaatacttgaacttatctcctgcatcgtgttatgttgcctct |
105 |
Q |
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| T |
35397889 |
gaggcatcatgccacgttgccacctatcgtgccactaaggagttggtacgtaagaatacaatacttgaacttatctcctgcatcgtgctatgttgcctct |
35397988 |
T |
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| Q |
106 |
gcattgtgccacgatttttccagttacaacctcccagaaacatccaaaatcgtaccgcgattttttcaatacttcaatcatc-aaattttgagtcaattt |
204 |
Q |
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|||| ||||||||||||||||||||||||||||||||| ||||||||||| | || |||||||| |||||||||||||||| ||||||| ||||||||| |
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| T |
35397989 |
gcatcatgccacgatttttccagttacaacctcccagaagcatccaaaatcttgccacgatttttccaatacttcaatcatcaaaatttttagtcaattt |
35398088 |
T |
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| Q |
205 |
tcaacacaaatatttatgcgatcaacaaatccagctagaat |
245 |
Q |
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| T |
35398089 |
tcaacacaaatatttatgctatcaacaaatccagctagaat |
35398129 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr2; HSP #2
Raw Score: 31; E-Value: 0.00000002
Query Start/End: Original strand, 6 - 92
Target Start/End: Complemental strand, 26352352 - 26352269
Alignment:
| Q |
6 |
gaggcatcatgccacgttgcca-cctatcgtgccactaaggagttggtacgtaacaatacaatacttgaacttatctcctgcatcgtg |
92 |
Q |
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| T |
26352352 |
gaggcaccgtgccacgttgccaacccatcgtgccacattggagttggta----acagtacaatacttgatcttatctcctgcatcgtg |
26352269 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr1 (Bit Score: 38; Significance: 0.000000000001; HSPs: 1)
Name: chr1
Description:
Target: chr1; HSP #1
Raw Score: 38; E-Value: 0.000000000001
Query Start/End: Original strand, 86 - 147
Target Start/End: Original strand, 8871522 - 8871583
Alignment:
| Q |
86 |
catcgtgttatgttgcctctgcattgtgccacgatttttccagttacaacctcccagaaaca |
147 |
Q |
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| T |
8871522 |
catcgtgtcatgttgcctctgcatcgtgccacgatttttccagtgacagcctaccataaaca |
8871583 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr8 (Bit Score: 32; Significance: 0.000000006; HSPs: 1)
Name: chr8
Description:
Target: chr8; HSP #1
Raw Score: 32; E-Value: 0.000000006
Query Start/End: Original strand, 62 - 129
Target Start/End: Complemental strand, 40320851 - 40320784
Alignment:
| Q |
62 |
tacaatacttgaacttatctcctgcatcgtgttatgttgcctctgcattgtgccacgatttttccagt |
129 |
Q |
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| T |
40320851 |
tacaatacttgctcttatctcctgcatcgtgccacgttcctcctacattgtgccacgatttttccagt |
40320784 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3 (Bit Score: 32; Significance: 0.000000006; HSPs: 1)
Name: chr3
Description:
Target: chr3; HSP #1
Raw Score: 32; E-Value: 0.000000006
Query Start/End: Original strand, 62 - 129
Target Start/End: Complemental strand, 28074166 - 28074099
Alignment:
| Q |
62 |
tacaatacttgaacttatctcctgcatcgtgttatgttgcctctgcattgtgccacgatttttccagt |
129 |
Q |
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|||||||||||| |||||||||||||||||| | ||| | ||| || ||||||||||||||||||| |
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| T |
28074166 |
tacaatacttgatcttatctcctgcatcgtgccacgttcctcctggatcgtgccacgatttttccagt |
28074099 |
T |
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