View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF4601_low_9 (Length: 240)
Name: NF4601_low_9
Description: NF4601
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF4601_low_9 |
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Alignment Details
Target: chr2 (Bit Score: 103; Significance: 2e-51; HSPs: 8)
Name: chr2
Description:
Target: chr2; HSP #1
Raw Score: 103; E-Value: 2e-51
Query Start/End: Original strand, 18 - 193
Target Start/End: Original strand, 41579076 - 41579251
Alignment:
| Q |
18 |
cactatgttccaggattcttttactcttcaacttactgaaaaatcatttcatgatgttattgttcacannnnnnnnnnnnnnnnnnnnnnnattgctact |
117 |
Q |
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| T |
41579076 |
cactatgttccaagattcttttactcttcaacttactgaaaaatcatttcatgatgttattgttcacactcctcttcctcctcctcctcctattgctact |
41579175 |
T |
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| Q |
118 |
ttgtgcatagccctaacttcagtgattatagtttcagcagtggtaggactagctactttgaacttgatccaattat |
193 |
Q |
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|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
41579176 |
ttgtgcatagccctaacttcagtgattatagtttcagcagtggtaggactagctactttgaacttgatccaattat |
41579251 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr2; HSP #2
Raw Score: 89; E-Value: 5e-43
Query Start/End: Original strand, 115 - 231
Target Start/End: Original strand, 41589176 - 41589292
Alignment:
| Q |
115 |
actttgtgcatagccctaacttcagtgattatagtttcagcagtggtaggactagctactttgaacttgatccaattatagactcatacaactacagtta |
214 |
Q |
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|||||||| |||||||||||||||||||||||||||| ||||||| ||| ||||||| |||||||||||||||||||||||||||||||||||||| ||| |
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| T |
41589176 |
actttgtggatagccctaacttcagtgattatagtttaagcagtgatagcactagctcctttgaacttgatccaattatagactcatacaactacaatta |
41589275 |
T |
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| Q |
215 |
caaccctttgctactcc |
231 |
Q |
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| T |
41589276 |
caacccttttctactcc |
41589292 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr2; HSP #3
Raw Score: 81; E-Value: 3e-38
Query Start/End: Original strand, 119 - 231
Target Start/End: Original strand, 41556535 - 41556647
Alignment:
| Q |
119 |
tgtgcatagccctaacttcagtgattatagtttcagcagtggtaggactagctactttgaacttgatccaattatagactcatacaactacagttacaac |
218 |
Q |
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|||||||||||||||||||||||||||||||||||||||||| || ||||||| |||||||| ||||||||||||||||||||||||||| | | ||||| |
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| T |
41556535 |
tgtgcatagccctaacttcagtgattatagtttcagcagtggcagcactagctcctttgaacctgatccaattatagactcatacaactataataacaac |
41556634 |
T |
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| Q |
219 |
cctttgctactcc |
231 |
Q |
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||||| ||||||| |
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| T |
41556635 |
ccttttctactcc |
41556647 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr2; HSP #4
Raw Score: 70; E-Value: 1e-31
Query Start/End: Original strand, 117 - 218
Target Start/End: Original strand, 41570251 - 41570352
Alignment:
| Q |
117 |
tttgtgcatagccctaacttcagtgattatagtttcagcagtggtaggactagctactttgaacttgatccaattatagactcatacaactacagttaca |
216 |
Q |
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||||||||||||||| || |||||||||||||||||||||||||||| ||||||| |||||||||||| ||||||||||| |||||||||||| ||||| |
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| T |
41570251 |
tttgtgcatagccctgacatcagtgattatagtttcagcagtggtagcactagctcctttgaacttgaaccaattatagagacatacaactacaattaca |
41570350 |
T |
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| Q |
217 |
ac |
218 |
Q |
| |
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|| |
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| T |
41570351 |
ac |
41570352 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr2; HSP #5
Raw Score: 52; E-Value: 6e-21
Query Start/End: Original strand, 18 - 85
Target Start/End: Original strand, 41556373 - 41556440
Alignment:
| Q |
18 |
cactatgttccaggattcttttactcttcaacttactgaaaaatcatttcatgatgttattgttcaca |
85 |
Q |
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|||||||||||| ||||||||| |||||||||| ||||| |||||||||||||||||||||||||||| |
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| T |
41556373 |
cactatgttccaagattcttttgctcttcaactcactgagaaatcatttcatgatgttattgttcaca |
41556440 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr2; HSP #6
Raw Score: 52; E-Value: 6e-21
Query Start/End: Original strand, 18 - 85
Target Start/End: Original strand, 41570070 - 41570137
Alignment:
| Q |
18 |
cactatgttccaggattcttttactcttcaacttactgaaaaatcatttcatgatgttattgttcaca |
85 |
Q |
| |
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|||||||||||| ||||| ||| |||||||||||||||| |||||||||||||||||||||||||||| |
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| T |
41570070 |
cactatgttccaagattcctttgctcttcaacttactgagaaatcatttcatgatgttattgttcaca |
41570137 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr2; HSP #7
Raw Score: 50; E-Value: 9e-20
Query Start/End: Original strand, 24 - 85
Target Start/End: Original strand, 41589021 - 41589082
Alignment:
| Q |
24 |
gttccaggattcttttactcttcaacttactgaaaaatcatttcatgatgttattgttcaca |
85 |
Q |
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|||||| ||||||||| ||||||||||||||||||||||||||||||||||||||| ||||| |
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| T |
41589021 |
gttccaagattcttttgctcttcaacttactgaaaaatcatttcatgatgttattgctcaca |
41589082 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr2; HSP #8
Raw Score: 31; E-Value: 0.00000002
Query Start/End: Original strand, 193 - 231
Target Start/End: Original strand, 41582725 - 41582763
Alignment:
| Q |
193 |
tagactcatacaactacagttacaaccctttgctactcc |
231 |
Q |
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| T |
41582725 |
tagactcatacaactacaattacaacccttttctactcc |
41582763 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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