View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF4602-Insertion-1 (Length: 770)
Name: NF4602-Insertion-1
Description: NF4602
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF4602-Insertion-1 |
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Alignment Details
Target: chr8 (Bit Score: 380; Significance: 0; HSPs: 2)
Name: chr8
Description:
Target: chr8; HSP #1
Raw Score: 380; E-Value: 0
Query Start/End: Original strand, 103 - 494
Target Start/End: Complemental strand, 2151442 - 2151051
Alignment:
| Q |
103 |
aataccaaaataatttcatcggcaattaattgccgatgaattttaactttgaacagatgttttttaaaattacattgctacatttgatttattaagatat |
202 |
Q |
| |
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|||||||||||||||||||| ||||||||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| | |
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| T |
2151442 |
aataccaaaataatttcatcagcaattaattgtcgatgaattttaactttgaacagatgttttttaaaattacattgctacatttgatttattaagatgt |
2151343 |
T |
|
| Q |
203 |
gcctttaagagtctaagtttttcatggaactgagggaagcttctatacatccattacaaagttcaagttcaattaatgaacatgatttcattcaaatcct |
302 |
Q |
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|
|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
2151342 |
gcctttaagagtctaagtttttcatggaactgagggaagcttctatacatccattacaaagttcaagttcaattaatgaacatgatttcattcaaatcct |
2151243 |
T |
|
| Q |
303 |
aaagatgtgcaactgctctacaaactagagtaacaaggaattgtctcccaacaagagttaatcttggtcgatgagaagtgacatgcccttcattgtgtcc |
402 |
Q |
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|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
2151242 |
aaagatgtgcaactgctctacaaactagagtaacaaggaattgtctcccaacaagagttaatcttggtcgatgagaagtgacatgcccttcattgtgtcc |
2151143 |
T |
|
| Q |
403 |
ccttgctgttgatttcttgtcaccattttgttaattgttggaataaagaatcatcactgtgaaatgtcattggaagattgatgcttcacccc |
494 |
Q |
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|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
2151142 |
ccttgctgttgatttcttgtcaccattttgttaattgttggaataaagaatcatcactgtgaaatgtcattggaagattgatgcttcacccc |
2151051 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr8; HSP #2
Raw Score: 50; E-Value: 3e-19
Query Start/End: Original strand, 8 - 64
Target Start/End: Complemental strand, 2151496 - 2151439
Alignment:
| Q |
8 |
actaggcctttatttggatttgcgttgg-tagaaaatctagtgtccaaatatagaata |
64 |
Q |
| |
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|||||||||||||||||||||||||||| ||||||||||||||||||||||||||||| |
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|
| T |
2151496 |
actaggcctttatttggatttgcgttgggtagaaaatctagtgtccaaatatagaata |
2151439 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr7 (Bit Score: 185; Significance: 1e-100; HSPs: 3)
Name: chr7
Description:
Target: chr7; HSP #1
Raw Score: 185; E-Value: 1e-100
Query Start/End: Original strand, 494 - 702
Target Start/End: Original strand, 4824818 - 4825026
Alignment:
| Q |
494 |
cactactagaaaaaagacatttagcatcagggtattcacatcagtggaccaatttcttgatgtcaaaagcaatgcggtggtatttttgaaattatagtga |
593 |
Q |
| |
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||||||||||||||||||||||| ||||| |||||||||||||||||||||||||||||||||||||||||| ||||||| ||||||||||||||||||| |
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| T |
4824818 |
cactactagaaaaaagacatttaacatcaaggtattcacatcagtggaccaatttcttgatgtcaaaagcaacgcggtggcatttttgaaattatagtga |
4824917 |
T |
|
| Q |
594 |
actttgccaaaggatttcacttcagtggaaaaatacctgaagggagaaataattattaaggaattttgacatcagcggatagaatacctgaagggaaaag |
693 |
Q |
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|||||||||||||||||||| |||||||||||||||||||||||||||||||||||||| |||||||||||||||||||||||||||||||||||||||| |
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| T |
4824918 |
actttgccaaaggatttcacatcagtggaaaaatacctgaagggagaaataattattaaagaattttgacatcagcggatagaatacctgaagggaaaag |
4825017 |
T |
|
| Q |
694 |
tctatcaca |
702 |
Q |
| |
|
||||||||| |
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|
| T |
4825018 |
tctatcaca |
4825026 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr7; HSP #2
Raw Score: 81; E-Value: 1e-37
Query Start/End: Original strand, 503 - 691
Target Start/End: Complemental strand, 7709828 - 7709640
Alignment:
| Q |
503 |
aaaaaagacatttagcatcagggtattcacatcagtggaccaatttcttgatgtcaaaagcaatgcggtggtatttttgaaattatagtgaactttgcca |
602 |
Q |
| |
|
|||||||||||||| |||||| | |||||||||||||||||||| ||||||| ||||||||| |||||| ||||||| ||||| |||||||| || || |
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| T |
7709828 |
aaaaaagacatttaacatcagagatttcacatcagtggaccaattacttgatggcaaaagcaacacggtggcatttttgcaattaaagtgaactctgaca |
7709729 |
T |
|
| Q |
603 |
aaggatttcacttcagtggaaaaatacctgaagggagaaataattattaaggaattttgacatcagcggatagaatacctgaagggaaa |
691 |
Q |
| |
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| || |||| | ||||| || ||||||||||| || ||||||||||||| |||||||||||||||| |||| ||||| ||| |||||| |
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| T |
7709728 |
agggttttctcatcagttgagaaatacctgaaagggaaaataattattaatgaattttgacatcagcagatataatacatgaggggaaa |
7709640 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr7; HSP #3
Raw Score: 31; E-Value: 0.00000007
Query Start/End: Original strand, 112 - 146
Target Start/End: Complemental strand, 6687807 - 6687773
Alignment:
| Q |
112 |
ataatttcatcggcaattaattgccgatgaatttt |
146 |
Q |
| |
|
|||||||||||||||||||| |||||||||||||| |
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|
| T |
6687807 |
ataatttcatcggcaattaactgccgatgaatttt |
6687773 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr2 (Bit Score: 80; Significance: 4e-37; HSPs: 3)
Name: chr2
Description:
Target: chr2; HSP #1
Raw Score: 80; E-Value: 4e-37
Query Start/End: Original strand, 494 - 689
Target Start/End: Complemental strand, 17165854 - 17165660
Alignment:
| Q |
494 |
cactactagaaaaaagacatttagcatcagggtattcacatcagtggaccaatttcttgatgtcaaaagcaatgcggtggtatttttgaaattatagtga |
593 |
Q |
| |
|
||||||||||||||||||||||| |||||| | |||||||||| ||||||||| ||||||| ||||||||| | ||||| ||||||| ||||| ||||| |
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| T |
17165854 |
cactactagaaaaaagacatttaacatcagagatttcacatcagcggaccaattacttgatgacaaaagcaacgtggtggcatttttgtaattaaagtga |
17165755 |
T |
|
| Q |
594 |
actttgccaaaggatttcacttcagtggaaaaatacctgaagggagaaataattattaaggaattttgacatcagcggatagaatacctgaaggga |
689 |
Q |
| |
|
||| || |||||| |||| | ||||| || |||||||||||||| |||||||||| || |||||||| ||||||| |||| ||||| ||| |||| |
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| T |
17165754 |
actctg-caaagggtttcccatcagttgagaaatacctgaaggggaaaataattatcaatgaattttggcatcagcagatataatacttgagggga |
17165660 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr2; HSP #2
Raw Score: 36; E-Value: 0.00000000007
Query Start/End: Original strand, 494 - 541
Target Start/End: Original strand, 1381503 - 1381550
Alignment:
| Q |
494 |
cactactagaaaaaagacatttagcatcagggtattcacatcagtgga |
541 |
Q |
| |
|
||||||||||||||||||||||| |||||| || |||||||||||||| |
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|
| T |
1381503 |
cactactagaaaaaagacatttaacatcagagttttcacatcagtgga |
1381550 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr2; HSP #3
Raw Score: 30; E-Value: 0.0000003
Query Start/End: Original strand, 105 - 150
Target Start/End: Original strand, 3257013 - 3257058
Alignment:
| Q |
105 |
taccaaaataatttcatcggcaattaattgccgatgaattttaact |
150 |
Q |
| |
|
|||||| |||| ||||||||||||||||||| ||||||||||||| |
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|
| T |
3257013 |
taccaacataacctcatcggcaattaattgccaatgaattttaact |
3257058 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr1 (Bit Score: 38; Significance: 0.000000000005; HSPs: 1)
Name: chr1
Description:
Target: chr1; HSP #1
Raw Score: 38; E-Value: 0.000000000005
Query Start/End: Original strand, 100 - 149
Target Start/End: Original strand, 44686272 - 44686321
Alignment:
| Q |
100 |
taaaataccaaaataatttcatcggcaattaattgccgatgaattttaac |
149 |
Q |
| |
|
|||||||||||||||||||||||| || |||| ||||||||||||||||| |
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|
| T |
44686272 |
taaaataccaaaataatttcatcgacagttaactgccgatgaattttaac |
44686321 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4 (Bit Score: 34; Significance: 0.000000001; HSPs: 1)
Name: chr4
Description:
Target: chr4; HSP #1
Raw Score: 34; E-Value: 0.000000001
Query Start/End: Original strand, 494 - 539
Target Start/End: Original strand, 51741417 - 51741462
Alignment:
| Q |
494 |
cactactagaaaaaagacatttagcatcagggtattcacatcagtg |
539 |
Q |
| |
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|||||||||||||||||||||| ||||||||| |||||||||||| |
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| T |
51741417 |
cactactagaaaaaagacatttgacatcagggttttcacatcagtg |
51741462 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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