View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF4602-Insertion-10 (Length: 378)
Name: NF4602-Insertion-10
Description: NF4602
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF4602-Insertion-10 |
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| [»] chr1 (2 HSPs) |
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Alignment Details
Target: chr1 (Bit Score: 264; Significance: 1e-147; HSPs: 2)
Name: chr1
Description:
Target: chr1; HSP #1
Raw Score: 264; E-Value: 1e-147
Query Start/End: Original strand, 7 - 378
Target Start/End: Original strand, 41606211 - 41606581
Alignment:
| Q |
7 |
aaatatatcataataaaaaagcacatggatcttcagttagctataacacttaagacaaaaaggaaattatcatggnnnnnnnnnn-cctgtcattttcaa |
105 |
Q |
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| T |
41606211 |
aaatatatcataataaaaaaccacatggatcttcagttagctataacacttaagacaaaaaggaaattatcatggaaaaaaaaaaacctgtcattttcaa |
41606310 |
T |
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| Q |
106 |
tcacaaaaggaaattattctnnnnnnnnnnnnnnngtgaaataaaaagcttggtaaaccagtaattaattaagag--ttaagacactaacatatacctgg |
203 |
Q |
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| T |
41606311 |
tcacaaaaggaaattattctaaaaaaaaaaa----gtgaaataaaaagcttggtaaaccagtaattaattaagagagttaagacactaacatatacctag |
41606406 |
T |
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| Q |
204 |
aaatttcattccacaagggtgctttctgattattctctctgaacttagaatcaagacgagatctgatttctagaagagaaagagtctcttgtctaggcca |
303 |
Q |
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| T |
41606407 |
aaatttcattccacaagggtgctttctgattattctctctgaacttagaatcaagacgagatctgatttctagaagagaaagagtctcttgtctgggcca |
41606506 |
T |
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| Q |
304 |
tctgttgttacaagaatcaaagttaccaagccatcctttatcagaagtttctaaacctacacagaatgcagtaga |
378 |
Q |
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| T |
41606507 |
tctgttgttacaagaatcaaagttaccaagccatcctttatcagaagtttctaaacctacacagaatgcagtaga |
41606581 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr1; HSP #2
Raw Score: 37; E-Value: 0.000000000009
Query Start/End: Original strand, 254 - 306
Target Start/End: Complemental strand, 26598053 - 26598001
Alignment:
| Q |
254 |
tcaagacgagatctgatttctagaagagaaagagtctcttgtctaggccatct |
306 |
Q |
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| T |
26598053 |
tcaagacgagatctgatttcaagaagagtaagagtttcttgtcttggccatct |
26598001 |
T |
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