View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF4602-Insertion-13 (Length: 218)
Name: NF4602-Insertion-13
Description: NF4602
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF4602-Insertion-13 |
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Alignment Details
Target: chr5 (Bit Score: 131; Significance: 4e-68; HSPs: 4)
Name: chr5
Description:
Target: chr5; HSP #1
Raw Score: 131; E-Value: 4e-68
Query Start/End: Original strand, 16 - 214
Target Start/End: Complemental strand, 40388436 - 40388238
Alignment:
| Q |
16 |
attgctttatgcttccagtgttgatttagttcttgctggtcacgttcatgcttatgaacattcagtgcgcctcttatagtttagcctttattttaatttc |
115 |
Q |
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| T |
40388436 |
attgctttatgctgctagtgttgatttagttcttgctggtcatgttcatgcttatgaacgttcgatacaccttttatagtttagcctttattttaatttc |
40388337 |
T |
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| Q |
116 |
taagcacgatttaatggaaatttaacggaagattggatccatgtggcatcgtccatataactactggtgatggtggaaaccaagaaggcttagctcata |
214 |
Q |
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| T |
40388336 |
taagcacgatttaatggaaatttaatggaagattggatcctggtggcgccgtccagataactattggtgatggtggaaaccgagaaggcttagctcata |
40388238 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr5; HSP #2
Raw Score: 104; E-Value: 5e-52
Query Start/End: Original strand, 8 - 155
Target Start/End: Complemental strand, 40378313 - 40378166
Alignment:
| Q |
8 |
atggagccattgctttatgcttccagtgttgatttagttcttgctggtcacgttcatgcttatgaacattcagtgcgcctcttatagtttagcctttatt |
107 |
Q |
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| T |
40378313 |
atggagccattcctttatgctgccagtgttgatttagttcttgctggtcatgttcatgcttatgaacattcgatacgccttttatagtttagcctttatt |
40378214 |
T |
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| Q |
108 |
ttaatttctaagcacgatttaatggaaatttaacggaagattggatcc |
155 |
Q |
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| T |
40378213 |
ttaatctctaagcccgatttaatggaaatttaatgaaagattggatcc |
40378166 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr5; HSP #3
Raw Score: 87; E-Value: 7e-42
Query Start/End: Original strand, 8 - 138
Target Start/End: Complemental strand, 40335569 - 40335439
Alignment:
| Q |
8 |
atggagccattgctttatgcttccagtgttgatttagttcttgctggtcacgttcatgcttatgaacattcagtgcgcctcttatagtttagcctttatt |
107 |
Q |
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| T |
40335569 |
atggagccattgctgtatgctgccagtgttgatttagttcttgctggacatgttcatgcttatgaacgttcggtaggccttttatattttagcctttatt |
40335470 |
T |
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| Q |
108 |
ttaatttctaagcacgatttaatggaaattt |
138 |
Q |
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| T |
40335469 |
ttaatttctaagcacaatttaatggaaattt |
40335439 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr5; HSP #4
Raw Score: 49; E-Value: 3e-19
Query Start/End: Original strand, 142 - 214
Target Start/End: Complemental strand, 40335392 - 40335320
Alignment:
| Q |
142 |
ggaagattggatccatgtggcatcgtccatataactactggtgatggtggaaaccaagaaggcttagctcata |
214 |
Q |
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| T |
40335392 |
ggaagattggatccttgtggcgctgtccatataactattggtgatggtggaaaccgagaaggcttagctcata |
40335320 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3 (Bit Score: 31; Significance: 0.00000002; HSPs: 1)
Name: chr3
Description:
Target: chr3; HSP #1
Raw Score: 31; E-Value: 0.00000002
Query Start/End: Original strand, 8 - 74
Target Start/End: Complemental strand, 20218714 - 20218648
Alignment:
| Q |
8 |
atggagccattgctttatgcttccagtgttgatttagttcttgctggtcacgttcatgcttatgaac |
74 |
Q |
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| T |
20218714 |
atggagccattgctttatgctgctagcgtagatttagtttttgctggtcatgtccacgcatatgaac |
20218648 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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