View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF4602-Insertion-14 (Length: 201)
Name: NF4602-Insertion-14
Description: NF4602
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF4602-Insertion-14 |
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| [»] chr4 (1 HSPs) |
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Alignment Details
Target: chr4 (Bit Score: 190; Significance: 1e-103; HSPs: 1)
Name: chr4
Description:
Target: chr4; HSP #1
Raw Score: 190; E-Value: 1e-103
Query Start/End: Original strand, 8 - 201
Target Start/End: Original strand, 38033064 - 38033257
Alignment:
| Q |
8 |
ggttgctctttgcttgattggtctatgcacattaatcctagggataaagcctgtttaacttgatgcaaagttgtttcagtaacatttattctctcatcaa |
107 |
Q |
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| T |
38033064 |
ggttgctctttgcttgattggtctatgcacattaatcctagggataaagcctgtttaacttgatgcaaagttgtttcagtaacatttattctctcatcaa |
38033163 |
T |
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| Q |
108 |
ccatttgttgcatttctgaaagacgaagagttctcatgtagctaataaaactggcatcatctccatcaaagtcctcttgaacgctcttgtttag |
201 |
Q |
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| T |
38033164 |
ccatttgttgcatttctgaaagacgaagagttctcatgtagctaataaaaccggcatcatctccatcaaagtcctcttgaacgctcttgtttag |
38033257 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr5 (Bit Score: 42; Significance: 0.000000000000005; HSPs: 2)
Name: chr5
Description:
Target: chr5; HSP #1
Raw Score: 42; E-Value: 0.000000000000005
Query Start/End: Original strand, 8 - 53
Target Start/End: Complemental strand, 22633515 - 22633470
Alignment:
| Q |
8 |
ggttgctctttgcttgattggtctatgcacattaatcctagggata |
53 |
Q |
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| T |
22633515 |
ggttgctctttgtttgattggtctatgcacattaatcctagggata |
22633470 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr5; HSP #2
Raw Score: 34; E-Value: 0.0000000003
Query Start/End: Original strand, 8 - 53
Target Start/End: Original strand, 22628377 - 22628422
Alignment:
| Q |
8 |
ggttgctctttgcttgattggtctatgcacattaatcctagggata |
53 |
Q |
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|||||||||||| |||||||||||||||||| ||||| |||||||| |
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| T |
22628377 |
ggttgctctttgtttgattggtctatgcacaataatcgtagggata |
22628422 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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