View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF4602-Insertion-15 (Length: 175)
Name: NF4602-Insertion-15
Description: NF4602
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF4602-Insertion-15 |
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Alignment Details
Target: chr4 (Bit Score: 162; Significance: 1e-86; HSPs: 1)
Name: chr4
Description:
Target: chr4; HSP #1
Raw Score: 162; E-Value: 1e-86
Query Start/End: Original strand, 10 - 171
Target Start/End: Original strand, 55906936 - 55907097
Alignment:
| Q |
10 |
tggatgggtgcagctacatgtagtatttatttctctaggaagaagtgtacacaacactcttcttgaatgaatattctcaaatgccgtcaaattcgtaact |
109 |
Q |
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| T |
55906936 |
tggatgggtgcagctacatgtagtatttatttctctaggaagaagtgtacacaacactcttcttgaatgaatattctcaaatgccgtcaaattcgtaact |
55907035 |
T |
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| Q |
110 |
atactcaagtttgaactcttttagtatttctcgctgaatccttgattttgtcacacatttta |
171 |
Q |
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| T |
55907036 |
atactcaagtttgaactcttttagtatttctcgctgaatccttgattttgtcacacatttta |
55907097 |
T |
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Target: chr2 (Bit Score: 138; Significance: 2e-72; HSPs: 1)
Name: chr2
Description:
Target: chr2; HSP #1
Raw Score: 138; E-Value: 2e-72
Query Start/End: Original strand, 10 - 171
Target Start/End: Original strand, 1035686 - 1035847
Alignment:
| Q |
10 |
tggatgggtgcagctacatgtagtatttatttctctaggaagaagtgtacacaacactcttcttgaatgaatattctcaaatgccgtcaaattcgtaact |
109 |
Q |
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|||||||||||| ||||||||||| ||||||||||||||||||||| ||| |||||||||||||||||||||||||||||||||| |||||||||||||| |
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| T |
1035686 |
tggatgggtgcaactacatgtagtgtttatttctctaggaagaagtatacccaacactcttcttgaatgaatattctcaaatgccttcaaattcgtaact |
1035785 |
T |
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| Q |
110 |
atactcaagtttgaactcttttagtatttctcgctgaatccttgattttgtcacacatttta |
171 |
Q |
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| T |
1035786 |
atactcaagtttgaactcttttagtatttctcactgaatccttgattttgtcacacatttta |
1035847 |
T |
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