View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF4602-Insertion-4 (Length: 585)
Name: NF4602-Insertion-4
Description: NF4602
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF4602-Insertion-4 |
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Alignment Details
Target: chr3 (Bit Score: 373; Significance: 0; HSPs: 3)
Name: chr3
Description:
Target: chr3; HSP #1
Raw Score: 373; E-Value: 0
Query Start/End: Original strand, 55 - 577
Target Start/End: Original strand, 54708101 - 54708623
Alignment:
| Q |
55 |
tgaatttttagtgaattgtcaacgggttaatggattgtgttgatccacccattagcatccatgtccatcca---------ttttttcacccctaatacat |
145 |
Q |
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| T |
54708101 |
tgaatttttagtgaattgtcaacgggttaatggattgtattgatccatccattagcatccatttccatccaattcatctattttttcaccc-taatacat |
54708199 |
T |
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| Q |
146 |
gaaggagggttatttgaaaaattgggagaaacacattttccttttcatagtgtgcatccaatggaatcccaagggaggcaaagaagaagacaatacataa |
245 |
Q |
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| T |
54708200 |
gaaggatggttatttgaaaaattgggagaaacacattttccttttcatagtgtgcatccaatggaatcccaggggaggcaaagaagaagacaatacataa |
54708299 |
T |
|
| Q |
246 |
agtttaatcaataaggattcaacttatattttttggggatataagttgctaattaccctagaaattatcttttatcttcaatcatcacttggaagaatnn |
345 |
Q |
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| T |
54708300 |
agtttaatcgataaggattcaacttatattttttggggatataagttgctaattaccctagaaattatcttttatcttcaatcatcacttggaagaataa |
54708399 |
T |
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| Q |
346 |
nnnnntaagacattgtttcttctatagaagatgagagtatatcaagttatgacatccacaagaccacaactgttgaaatagtttagtcgcgttgattact |
445 |
Q |
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| T |
54708400 |
aaaaataagacattgtttcttctatagaagatgagagtatatcaagttatgacat--------ccacaactgttgaaatagtttggtcgcgttgattact |
54708491 |
T |
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| Q |
446 |
ttttgatatatgactctctttttgaaccgactcctatgcgctaagataatacgagtgtgattcaaattggataataacttgannnnnnncatgaacgcaa |
545 |
Q |
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| T |
54708492 |
ttttgatatatgactctcttgttggaccgactcctatgcactaagataatacgagtgtgattcaaattggatcataactttatttttttcatgaacgcaa |
54708591 |
T |
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| Q |
546 |
caaaatatatagagattgattgtcactgtaat |
577 |
Q |
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| T |
54708592 |
caaaatatatagagattgattgtcactgtaat |
54708623 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3; HSP #2
Raw Score: 179; E-Value: 3e-96
Query Start/End: Original strand, 31 - 323
Target Start/End: Original strand, 54678190 - 54678489
Alignment:
| Q |
31 |
atggattagattgaatttttccaatgaatttttagtgaattgtcaacgggttaatggattgtgttgatccacccattagcatccatgtccatccattt-- |
128 |
Q |
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| T |
54678190 |
atggatttgattgaatttttccaataaatttttagtggattgtcaacgtgttaatggattgtgttgatc-atccattagcatccatatccatccaattca |
54678288 |
T |
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| Q |
129 |
----ttt--cacccctaatacatgaaggagggttatttgaaaaattgggagaaacacattttccttttcatagtgtgcatccaatggaatcccaagggag |
222 |
Q |
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| T |
54678289 |
tccgtttgccacccttaatacatgaaggagggttatgtgaaaaatcggaagaaacacattttccttttcatagtgtgcatccaatgaaatcccaagggag |
54678388 |
T |
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| Q |
223 |
gcaaagaagaagacaatacataaagtttaatcaataaggattcaacttatattttttggggatataagttgctaattaccctagaaattatcttttatct |
322 |
Q |
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| T |
54678389 |
gcaaagaagaagacaatacataaagtttaatttgtaaggattcaacttatatttcttggggatagaagttgcccattacccttgaaattatcttttatct |
54678488 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3; HSP #3
Raw Score: 65; E-Value: 3e-28
Query Start/End: Original strand, 409 - 513
Target Start/End: Original strand, 54678976 - 54679080
Alignment:
| Q |
409 |
ccacaactgttgaaatagtttagtcgcgttgattactttttgatatatgactctctttttgaaccgactcctatgcgctaagataatacgagtgtgattc |
508 |
Q |
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| T |
54678976 |
ccacaattgttgaaatagtttggtcgcgttaactactttttgatatatgactctctttctggaccgactcttatgcactaaaataatacgagtatgattc |
54679075 |
T |
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| Q |
509 |
aaatt |
513 |
Q |
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| T |
54679076 |
aaatt |
54679080 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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