View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF4602-Insertion-5 (Length: 534)
Name: NF4602-Insertion-5
Description: NF4602
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF4602-Insertion-5 |
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Alignment Details
Target: chr4 (Bit Score: 356; Significance: 0; HSPs: 1)
Name: chr4
Description:
Target: chr4; HSP #1
Raw Score: 356; E-Value: 0
Query Start/End: Original strand, 107 - 531
Target Start/End: Complemental strand, 24567272 - 24566853
Alignment:
| Q |
107 |
ttttatttgttcagccaattgtaattaatatcaaatatacagtttagtcacttgccaaaaacttgttcacaaaaggtgtgtgcgtgcacgtggtgctgca |
206 |
Q |
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| T |
24567272 |
ttttatttgttcaaccaattgtaat----atcaaatatagagtttagtcacttgctaataacttgttcacaaaaggtgtgtgtgtgcacgtggtgctgca |
24567177 |
T |
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| Q |
207 |
aattgcctggtattacgagatccaagcattggctagctgttaacctaatttgttccctatctctacacgttcaatattttataaattattattattattg |
306 |
Q |
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| T |
24567176 |
aattgcctggtgttacgagatccaagcattggctagctgttaacctaatttgttccctatctctacacgttcaatattttataaattattattattattg |
24567077 |
T |
|
| Q |
307 |
agcaataacatagacattccataaaatactagatttcttccatgttctataatcattgatttagttccgataaaggaagatgcatttagtcaagaatgct |
406 |
Q |
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| T |
24567076 |
agcaataacatagacattccataaaatactagatttctcccatgttctatcatcattgatttagttccgataaaggaagatgcatttagtcaagaatgct |
24566977 |
T |
|
| Q |
407 |
gagtgcaagtcactatggatagatgatggttaaaaatatctttttaacaagatttttcaatctgtccattcaatatgtactcttataaattgaaccttgg |
506 |
Q |
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| T |
24566976 |
aagtgcaagtcactatggatagatgatggttaaaaatatctttttaacaagatttttcaatctgtccattcaatatgtactcttataaattgaaccttcg |
24566877 |
T |
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| Q |
507 |
caataacctttaacacaattgtcga |
531 |
Q |
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| T |
24566876 |
caacaacc-ttaacacaattgtcga |
24566853 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr6 (Bit Score: 31; Significance: 0.00000005; HSPs: 1)
Name: chr6
Description:
Target: chr6; HSP #1
Raw Score: 31; E-Value: 0.00000005
Query Start/End: Original strand, 7 - 45
Target Start/End: Complemental strand, 10152551 - 10152513
Alignment:
| Q |
7 |
acttgtttgatatcatggcgagtttaacaaaatcatgat |
45 |
Q |
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| T |
10152551 |
acttgtttgatatcatggtgagtttgacaaaatcatgat |
10152513 |
T |
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