View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF4602-Insertion-7 (Length: 432)
Name: NF4602-Insertion-7
Description: NF4602
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF4602-Insertion-7 |
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| [»] chr1 (2 HSPs) |
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Alignment Details
Target: chr1 (Bit Score: 389; Significance: 0; HSPs: 2)
Name: chr1
Description:
Target: chr1; HSP #1
Raw Score: 389; E-Value: 0
Query Start/End: Original strand, 8 - 432
Target Start/End: Complemental strand, 39307785 - 39307361
Alignment:
| Q |
8 |
ccaacattactaaatacataattaagttcttgtttcacctacctaattttatatctcttcctttctcacaggcaaaaatcaattaaagttgcaagatgaa |
107 |
Q |
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|||||||||| |||||||||||||||||||||||||||||| ||||||||||||||||||||||||||||| ||||||||||||||||||||||||||| |
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| T |
39307785 |
ccaacattaccaaatacataattaagttcttgtttcacctagctaattttatatctcttcctttctcacagctaaaaatcaattaaagttgcaagatgaa |
39307686 |
T |
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| Q |
108 |
tccttgaagatgcctattcctatttttggcataactacttataatctggaagggtcaattttgactcttccggaagcagcaaaatcagatgaaatgaact |
207 |
Q |
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|||||||||||||||||||||||||||||||||||||||||||| ||||||||||||||||||||||||||| ||||||||||||||||||||||||||| |
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| T |
39307685 |
tccttgaagatgcctattcctatttttggcataactacttataacctggaagggtcaattttgactcttccgaaagcagcaaaatcagatgaaatgaact |
39307586 |
T |
|
| Q |
208 |
ctttgttgaaggctgccgatgtttggttaaagagtttgaaggttgagcttcatcatgactacaacttttttgttaaggatggtaaacagtgggtaggaga |
307 |
Q |
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| T |
39307585 |
ctttgttgaaggctgccgatgtttggttaaagagtttgaaggttgagcttcatcaagactacaacttttttgttaaggatggtaaacagtgggtaggaga |
39307486 |
T |
|
| Q |
308 |
atagaaagactgctggttggcattaggaatcattttgttaaggctgaaggttgaagatccatcatgacaaagatttcaaccatacttgcaaatggttgaa |
407 |
Q |
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| T |
39307485 |
atagaaagactgctggttggcattaggaaccattttgttaaggctgaaggttgaagatccatcatgacaaagatttcaaccatacttggaaatggttgaa |
39307386 |
T |
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| Q |
408 |
gttaaatcagtgactgcatctttta |
432 |
Q |
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| T |
39307385 |
gttaaatcagtgactgcatctttta |
39307361 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr1; HSP #2
Raw Score: 80; E-Value: 2e-37
Query Start/End: Original strand, 10 - 317
Target Start/End: Complemental strand, 39299954 - 39299640
Alignment:
| Q |
10 |
aacattactaaatacataattaagttctt-gtttcacctacctaattttatatctcttcctttctcacaggcaaaaatcaattaaagttgca------ag |
102 |
Q |
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|||||||||||||||| |||||| ||||| |||||||||| ||||||||||||||||||||| ||||||||||||||||| ||||||||| || |
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| T |
39299954 |
aacattactaaatacaaaattaacttctttgtttcacctatctaattttatatctcttccttcgtcacaggcaaaaatcaaccaaagttgcatgatggag |
39299855 |
T |
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| Q |
103 |
atgaatccttgaagatgcctattcctatttttggcataactacttataatctggaagggtcaattttgactcttccggaagcagcaaaatcagatgaaat |
202 |
Q |
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| T |
39299854 |
atggaccgctgaaaatgcctcttccaatttttggcctaactactgataagctgaaaaggtcaattttggcttttccgaaagcacgtgaatcaactcaact |
39299755 |
T |
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| Q |
203 |
gaactctttgttgaaggctgccgatgtttggttaaagagtttgaaggttgagcttcatcatgactacaacttttttgttaaggatggtaaacagtgggta |
302 |
Q |
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|||| ||||||||||||||||||||| ||||||| | |||||||| |||| ||| |||| ||||| |||||||| | ||||||| |||||||| |
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| T |
39299754 |
gaacactttgttgaaggctgccgatgattggttagacagtttgaatgttgtcagccattatgatcacaaccattttgttaggcatggtaagcagtgggtg |
39299655 |
T |
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| Q |
303 |
ggagaatagaaagac |
317 |
Q |
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| T |
39299654 |
gaagaaaagaaagac |
39299640 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4 (Bit Score: 137; Significance: 2e-71; HSPs: 3)
Name: chr4
Description:
Target: chr4; HSP #1
Raw Score: 137; E-Value: 2e-71
Query Start/End: Original strand, 11 - 267
Target Start/End: Complemental strand, 26563646 - 26563390
Alignment:
| Q |
11 |
acattactaaatacataattaagttcttgtttcacctacctaattttatatctcttcctttctcacaggcaaaaatcaattaaagttgcaagatgaatcc |
110 |
Q |
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|||||||||||| || || |||||||| || ||||||| | ||||||||||||| ||||||||||||||||||||||| ||| |||||| | || || |
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| T |
26563646 |
acattactaaatgcaaaactaagttctcattgcacctacttgattttatatctctacctttctcacaggcaaaaatcaaccaaatttgcaaaacaaaccc |
26563547 |
T |
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| Q |
111 |
ttgaagatgcctattcctatttttggcataactacttataatctggaagggtcaattttgactcttccggaagcagcaaaatcagatgaaatgaactctt |
210 |
Q |
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|||| |||| || |||||||||||||| ||||||||||||| ||| |||||||||||||||||||||||||| || | | ||| ||||||||||||||| |
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| T |
26563546 |
ttgacgatggctcttcctatttttggcttaactacttataacctgaaagggtcaattttgactcttccggaaacatctgattcacatgaaatgaactctt |
26563447 |
T |
|
| Q |
211 |
tgttgaaggctgccgatgtttggttaaagagtttgaaggttgagcttcatcatgact |
267 |
Q |
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| T |
26563446 |
agttgaaggctgccgatgtttggttaaagagtttgaaggttgaggttcatcatgact |
26563390 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4; HSP #2
Raw Score: 117; E-Value: 2e-59
Query Start/End: Original strand, 11 - 292
Target Start/End: Complemental strand, 26555675 - 26555388
Alignment:
| Q |
11 |
acattactaaatacataattaagttcttgtttcacctacctaattttatatctcttcctttctcacaggc------aaaaatcaattaaagttgcaagat |
104 |
Q |
| |
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||||||||||||||| || |||||| | || || |||| | |||||||||||||||| |||||||| |||||||||| ||| |||||||| |
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| T |
26555675 |
acattactaaatacacaactaagttatcattgcatctacttgattttatatctcttcccatctcacagaagaagaaaaaaatcaatcaaaattgcaagac |
26555576 |
T |
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| Q |
105 |
gaatccttgaagatgcctattcctatttttggcataactacttataatctggaagggtcaattttgactcttccggaagcagcaaaatcagatgaaatga |
204 |
Q |
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| T |
26555575 |
aaacccttgaagatggctctaactatttttggcttaactacttataacctgaaagggtcaattttgactcttccggaagagtcagattcacatgaaatga |
26555476 |
T |
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| Q |
205 |
actctttgttgaaggctgccgatgtttggttaaagagtttgaaggttgagcttcatcatgactacaacttttttgttaaggatggtaa |
292 |
Q |
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| T |
26555475 |
actctttgttgaaggctgccgatgtttggttaaagagtttgaaggttgaggttgatcatgaccacaactattttgtcaaggatagtaa |
26555388 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4; HSP #3
Raw Score: 82; E-Value: 1e-38
Query Start/End: Original strand, 60 - 314
Target Start/End: Original strand, 26555097 - 26555343
Alignment:
| Q |
60 |
atctcttcctttctcacaggcaaaaatcaattaaagttgcaagatgaatccttgaagatgcctattcctatttttggcataactacttataatctggaag |
159 |
Q |
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|||||| ||||| ||||| ||||||||||| ||| |||||||| || ||||||| ||| || ||||||||| || | |||||||||||| || ||| |
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| T |
26555097 |
atctctccctttttcacatgcaaaaatcaaccaaaattgcaagacaaacccttgaatatggctcttcctatttctgtctcaactacttataacctcaaag |
26555196 |
T |
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| Q |
160 |
ggtcaattttgactcttccggaagcagcaaaatcagatgaaatgaactctttgttgaaggctgccgatgtttggttaaagagtttgaaggttgagcttca |
259 |
Q |
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|||||||||||||||||| ||||||| || | ||| | ||||||||||||||| |||||||||||||||||| |||||||||||||| |||| |
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| T |
26555197 |
ggtcaattttgactcttctggaagcatcagattcaca--------actctttgttgaaggttgccgatgtttggttaaatagtttgaaggttgaagttca |
26555288 |
T |
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| Q |
260 |
tcatgactacaacttttttgttaaggatggtaaacagtgggtaggagaatagaaa |
314 |
Q |
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||||||||||||| |||||| ||||||||||| ||| || ||| | |||||||| |
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| T |
26555289 |
tcatgactacaaccattttgtcaaggatggtaagcagcggatagaaaaatagaaa |
26555343 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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