View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
|
Alignment Overview
Query: NF4602-Insertion-8 (Length: 423)
Name: NF4602-Insertion-8
Description: NF4602
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF4602-Insertion-8 |
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| [»] chr1 (5 HSPs) |
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Alignment Details
Target: chr1 (Bit Score: 405; Significance: 0; HSPs: 5)
Name: chr1
Description:
Target: chr1; HSP #1
Raw Score: 405; E-Value: 0
Query Start/End: Original strand, 7 - 423
Target Start/End: Original strand, 2303843 - 2304259
Alignment:
| Q |
7 |
aattcaagcttctctaaagtgttggattccagaaggaacattcttgaggttggggattttgaataactcgaacttttttagagaatgcgatgctccttta |
106 |
Q |
| |
|
|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||||||||| |
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|
| T |
2303843 |
aattcaagcttctctaaagtgttggattccagaaggaacattcttgaggttggggattttgaataactcgaacttttttagagaatgcaatgctccttta |
2303942 |
T |
|
| Q |
107 |
tcgataacaattgaattcaagttggacaagtgtccaatgtatatagttcttttagattttgacaacctccatcatgaaaatgtaaacttttgccttcata |
206 |
Q |
| |
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|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||||||||||||||||||||||||||||||||||| |
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| T |
2303943 |
tcgataacaattgaattcaagttggacaagtgtccaatgtatatagttcttttagattttgaaaacctccatcatgaaaatgtaaacttttgccttcata |
2304042 |
T |
|
| Q |
207 |
agcattatagatgattgagagggacaacaagtttggcatgttttctagatacttaattggatcatcagttaagaaggaatctgctaaatcaaacttaaca |
306 |
Q |
| |
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|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
2304043 |
agcattatagatgattgagagggacaacaagtttggcatgttttctagatacttaattggatcatcagttaagaaggaatctgctaaatcaaacttaaca |
2304142 |
T |
|
| Q |
307 |
agattttgaagttgagaaatctctggaaaattctccaacttgccacatggtttaagatttcgaagcataggtggaagcgaaaccaaatgtaaatcaatga |
406 |
Q |
| |
|
|||||||||||||||||||||||||||||||||||||||||||||||| ||||||||||||||||||||||||||||||||||||||||||||||||||| |
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|
| T |
2304143 |
agattttgaagttgagaaatctctggaaaattctccaacttgccacatagtttaagatttcgaagcataggtggaagcgaaaccaaatgtaaatcaatga |
2304242 |
T |
|
| Q |
407 |
catcaaaaaccccatca |
423 |
Q |
| |
|
||||||||||||||||| |
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|
| T |
2304243 |
catcaaaaaccccatca |
2304259 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr1; HSP #2
Raw Score: 230; E-Value: 1e-127
Query Start/End: Original strand, 23 - 414
Target Start/End: Complemental strand, 34977467 - 34977075
Alignment:
| Q |
23 |
aagtgttggattccagaaggaacattcttgaggttggggattttgaataactcgaacttttttagagaatgcgatgctcctttatcgataacaattgaat |
122 |
Q |
| |
|
||||||||||| ||||||||||| ||| |||||||||||||| ||||||||| | |||||||||||||||| ||||||||||||||||||||||||||| |
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|
| T |
34977467 |
aagtgttggatcccagaaggaaccgtctcgaggttggggatttcgaataactcaagcttttttagagaatgcaatgctcctttatcgataacaattgaat |
34977368 |
T |
|
| Q |
123 |
tcaagttggacaagtgtccaatgtatatagttcttttagattttgacaacctccatcatgaaaatgtaaacttttgccttcataagcattatagatgatt |
222 |
Q |
| |
|
||| ||||| | | ||||||| || ||||| || ||||||||||||||||||||||||||||||||||||| |||| |||||||||| |||||||| |
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| T |
34977367 |
tcatgttgggacattctccaatg--tacagttccttaagattttgacaacctccatcatgaaaatgtaaactttcgcctacataagcattggagatgatt |
34977270 |
T |
|
| Q |
223 |
gagagggacaacaagtttggcatgttttctagatacttaattggatcatcagttaagaaggaatctgctaaatcaaacttaacaagattttgaagttgag |
322 |
Q |
| |
|
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |||||| || ||||||||| ||||| |||||||| |
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|
| T |
34977269 |
gagagggacaacaagtttggcatgttttctagatacttaattggatcatcagttaagaaggaacgtgctaattccaacttaacatgatttgtaagttgag |
34977170 |
T |
|
| Q |
323 |
aaat---ctctggaaaattctccaacttgccacatggtttaagatttcgaagcataggtggaagcgaaaccaaatgtaaatcaatgacatcaaaa |
414 |
Q |
| |
|
||| ||| || || |||||||||||||||||| |||||||||||||||||||||||||| |||||||||||| ||||||||||||||||||| |
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|
| T |
34977169 |
gaatccactccgggaacttctccaacttgccacatagtttaagatttcgaagcataggtggaggcgaaaccaaatctaaatcaatgacatcaaaa |
34977075 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr1; HSP #3
Raw Score: 227; E-Value: 1e-125
Query Start/End: Original strand, 9 - 411
Target Start/End: Complemental strand, 34991353 - 34990954
Alignment:
| Q |
9 |
ttcaagcttctctaaagtgttggattccagaaggaacattcttgaggttggggattttgaataactcgaacttttttagagaatgcgatgctcctttatc |
108 |
Q |
| |
|
||||||||||||||| ||||||||||||||||| |||||||||||||||| | ||||||||| ||||||||||||||||| ||||||||||||| |
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|
| T |
34991353 |
ttcaagcttctctaa-gtgttggattccagaag------tcttgaggttggggatctcgaataactcaaacttttttagagaatgtaatgctcctttatc |
34991261 |
T |
|
| Q |
109 |
gataacaattgaattcaagttggacaagtgtccaatgtatatagttcttttagattttgacaacctccatcatgaaaatgtaaacttttgccttcataag |
208 |
Q |
| |
|
|||||||||||||||| ||||| ||| ||||||||||| |||| |||||||||||||||||||||||||||||||||||||||| |||||||||| |
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|
| T |
34991260 |
aataacaattgaattcatgttgggacagtctccaatgtata--gttcctttagattttgacaacctccatcatgaaaatgtaaactttcaccttcataag |
34991163 |
T |
|
| Q |
209 |
cattatagatgattgagagggacaacaagtttggcatgttttctagatacttaattggatcatcagttaagaaggaatctgctaaatcaaacttaacaag |
308 |
Q |
| |
|
| || | ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||||| ||||||||||||||||||||| |
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|
| T |
34991162 |
ctttgttgatgattgagagggacaacaagtttggcatgttttctagatacttaattggatcatcagttaataaggaatatgctaaatcaaacttaacaag |
34991063 |
T |
|
| Q |
309 |
attttgaagttgagaaat---ctctggaaaattctccaacttgccacatggtttaagatttcgaagcatag---gtggaagcgaaaccaaatgtaaatca |
402 |
Q |
| |
|
||||| |||||||| ||| ||||||||| |||||||||||| ||||| ||||||||||||||||||||| ||||| | ||||||||||| | |||| |
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|
| T |
34991062 |
atttttaagttgaggaatccactctggaaacttctccaacttgacacatagtttaagatttcgaagcataggtagtggaggtgaaaccaaatgcatatca |
34990963 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr1; HSP #4
Raw Score: 195; E-Value: 1e-106
Query Start/End: Original strand, 9 - 408
Target Start/End: Complemental strand, 34984678 - 34984295
Alignment:
| Q |
9 |
ttcaagcttctctaaagtgttggattccagaaggaacattcttgaggttggggattttgaataactcgaacttttttagagaatgcgatgctcctttatc |
108 |
Q |
| |
|
||||||||||||||| ||||||||| ||||||||||| ||||||||| ||| ||||||||| |||||||||||||||||| ||||||||||||| |
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|
| T |
34984678 |
ttcaagcttctctaa-gtgttggatcccagaaggaac------gaggttgggcattccgaataactcaaacttttttagagaatgcaatgctcctttatc |
34984586 |
T |
|
| Q |
109 |
gataacaattgaattcaagttggacaagtgtccaatgtatatagttcttttagattttgacaacctccatcatgaaaatgtaaacttttgccttcataag |
208 |
Q |
| |
|
||||||||||||||||| |||| ||||| ||||||||| | |||| |||||||||||||||||||||||||||||||||||||||| ||||||||||| |
|
|
| T |
34984585 |
gataacaattgaattcatgttgcgcaagtctccaatgtaca--gttcctttagattttgacaacctccatcatgaaaatgtaaactttcgccttcataag |
34984488 |
T |
|
| Q |
209 |
cattatagatgattgagagggacaacaagtttggcatgttttctagatacttaattggatcatcagttaagaaggaatctgctaaatcaaacttaacaag |
308 |
Q |
| |
|
|||| |||||||||||||||||||||||||||||||||||| || |||| |||||||||||||||||||||||||| ||||||||||||||||||||| |
|
|
| T |
34984487 |
cattggagatgattgagagggacaacaagtttggcatgttttataaatac--aattggatcatcagttaagaaggaatttgctaaatcaaacttaacaag |
34984390 |
T |
|
| Q |
309 |
attttgaagttgagaaatctctggaaaattctccaacttgccacatggtttaagatttcgaagcata---ggtggaagcgaaaccaaatgtaaatcaatg |
405 |
Q |
| |
|
||||| |||||||| | ||| ||||||||||| ||| || |||||| | ||||||||||| ||||| ||||||||||||||||||||||| |
|
|
| T |
34984389 |
atttttaagttgag--------gaaaacttctccaactttccatatagtttaaaacttcgaagcatatgtagtggaggcgaaaccaaatgtaaatcaatg |
34984298 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr1; HSP #5
Raw Score: 63; E-Value: 3e-27
Query Start/End: Original strand, 298 - 411
Target Start/End: Complemental strand, 34984241 - 34984125
Alignment:
| Q |
298 |
aacttaacaagattttgaagttgagaaatc---tctggaaaattctccaacttgccacatggtttaagatttcgaagcataggtggaagcgaaaccaaat |
394 |
Q |
| |
|
|||||||||||||||| |||||||| |||| ||||||| ||||||||| |||||| |||||||| ||||||||||||||||| |||||||||||| |
|
|
| T |
34984241 |
aacttaacaagatttttaagttgaggaatccactctggaatcttctccaacctgccaccaagtttaagaattcgaagcataggtggaggcgaaaccaaat |
34984142 |
T |
|
| Q |
395 |
gtaaatcaatgacatca |
411 |
Q |
| |
|
||||||||||||||||| |
|
|
| T |
34984141 |
gtaaatcaatgacatca |
34984125 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr5 (Bit Score: 242; Significance: 1e-134; HSPs: 1)
Name: chr5
Description:
Target: chr5; HSP #1
Raw Score: 242; E-Value: 1e-134
Query Start/End: Original strand, 9 - 416
Target Start/End: Complemental strand, 40582037 - 40581630
Alignment:
| Q |
9 |
ttcaagcttctctaaagtgttggattccagaaggaacattcttgaggttggggattttgaataactcgaacttttttagagaatgcgatgctcctttatc |
108 |
Q |
| |
|
|||||||||||||| ||||||||| ||||||||||| |||||||||||||||| | ||||||||| ||| ||||||||||||| ||||||||||||| |
|
|
| T |
40582037 |
ttcaagcttctctag-gtgttggatcccagaaggaaccgtcttgaggttggggatatggaataactcaaacaattttagagaatgcaatgctcctttatc |
40581939 |
T |
|
| Q |
109 |
gataacaattgaattcaagttggacaagtgtccaatgtatatagttcttttagattttgacaacctccatcatgaaaatgtaaacttttgccttcataag |
208 |
Q |
| |
|
||||||||||||||||| |||| |||| ||||||||| | |||| |||||||||||||||||||| |||||||||||||| |||| ||||||||||| |
|
|
| T |
40581938 |
gataacaattgaattcacgttgagcaagcctccaatgtaca--gttcctttagattttgacaacctccgtcatgaaaatgtaagctttcgccttcataag |
40581841 |
T |
|
| Q |
209 |
cattatagatgattgagagggacaacaagtttggcatgttttctagatacttaattggatcatcagttaagaaggaatctgctaaatcaaacttaacaag |
308 |
Q |
| |
|
|||| |||||||||||||||||||||| |||| |||||||||||||||||||||||||||||||| |||||||||||| ||||||||||||||||||||| |
|
|
| T |
40581840 |
cattgtagatgattgagagggacaacatgtttagcatgttttctagatacttaattggatcatcatttaagaaggaatttgctaaatcaaacttaacaag |
40581741 |
T |
|
| Q |
309 |
attttgaagttgagaaa---tctctggaaaattctccaacttgccacatggtttaagatttcgaagcataggtggaagcgaaaccaaatgtaaatcaatg |
405 |
Q |
| |
|
||||| |||||||| || ||||||||| |||| ||||||||||||| ||||||| |||||||||||||||||| ||||||||||||||||||||||| |
|
|
| T |
40581740 |
atttttaagttgaggaacccactctggaaacttcttcaacttgccacatagtttaagctttcgaagcataggtggaggcgaaaccaaatgtaaatcaatg |
40581641 |
T |
|
| Q |
406 |
acatcaaaaac |
416 |
Q |
| |
|
|||||| |||| |
|
|
| T |
40581640 |
acatcataaac |
40581630 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3 (Bit Score: 76; Significance: 5e-35; HSPs: 3)
Name: chr3
Description:
Target: chr3; HSP #1
Raw Score: 76; E-Value: 5e-35
Query Start/End: Original strand, 48 - 278
Target Start/End: Original strand, 22619279 - 22619507
Alignment:
| Q |
48 |
tcttgaggttggggattttgaataactcgaacttttttagagaatgcgatgctcctttatcgataacaattgaattcaagttggacaagtgtccaatgta |
147 |
Q |
| |
|
|||||||||||||||| | ||||||||||||||||||||||||| |||||||| ||||| | |||||||| |||||| | | | | || ||| | |
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|
| T |
22619279 |
tcttgaggttggggatgctagataactcgaacttttttagagaatgtagcgctcctttgtcgatgaaaattgaatgcaagttaggcgattctctaat--a |
22619376 |
T |
|
| Q |
148 |
tatagttcttttagattttgacaacctccatcatgaaaatgtaaacttttgccttcataagcattatagatgattgagagggacaacaagtttggcatgt |
247 |
Q |
| |
|
|||||||| ||||||||||| | |||||||| |||||||||||||||| |||||||||||||| | ||||||||||||||||||||||||| ||| | |
|
|
| T |
22619377 |
tatagttcctttagattttgcaaccctccatcgtgaaaatgtaaactttcaccttcataagcattgttgatgattgagagggacaacaagttttgcagat |
22619476 |
T |
|
| Q |
248 |
tttctagatacttaattggatcatcagttaa |
278 |
Q |
| |
|
|||| || |||| |||||||| ||| |||| |
|
|
| T |
22619477 |
tttcaagcgactttattggatcttcaattaa |
22619507 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3; HSP #2
Raw Score: 51; E-Value: 4e-20
Query Start/End: Original strand, 69 - 278
Target Start/End: Original strand, 22646594 - 22646801
Alignment:
| Q |
69 |
ataactcgaacttttttagagaatgcgatgctcctttatcgataacaattgaattcaagttggacaagtgtccaatgtatatagttcttttagattttga |
168 |
Q |
| |
|
|||||| |||||||||||||||| | ||||||||| ||| || || || |||||||||| | ||||| | |||| |||||||| |||||||||||| |
|
|
| T |
22646594 |
ataactggaacttttttagagaaggtaatgctccttcatcaatgacgatcgaattcaagtcaggcaagtctgtaatg--tatagttcctttagattttga |
22646691 |
T |
|
| Q |
169 |
caacctccatcatgaaaatgtaaacttttgccttcataagcattatagatgattgagagggacaacaagtttggcatgttttctagatacttaattggat |
268 |
Q |
| |
|
| ||||||||||||||||||||| ||| |||| |||||| || | ||||||||||| ||||| ||||||| ||| || |||| || | ||||||| |
|
|
| T |
22646692 |
aaccctccatcatgaaaatgtaaaatttcacctttataagctttgttaatgattgagagagacaataagtttgacattttatctaaatgttctattggat |
22646791 |
T |
|
| Q |
269 |
catcagttaa |
278 |
Q |
| |
|
||||||||| |
|
|
| T |
22646792 |
tatcagttaa |
22646801 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3; HSP #3
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 96 - 129
Target Start/End: Complemental strand, 22123930 - 22123897
Alignment:
| Q |
96 |
atgctcctttatcgataacaattgaattcaagtt |
129 |
Q |
| |
|
|||||||||| ||||||||||||||||||||||| |
|
|
| T |
22123930 |
atgctcctttttcgataacaattgaattcaagtt |
22123897 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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