View Alignment

This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.

Legend
 Query
 Query hiting target  Query hiting target's complemental strand
 Query's complemental strand hiting target  Query's complemental strand hiting target's complemental strand

Alignment Overview

Query: NF4602-Insertion-9 (Length: 415)

Name: NF4602-Insertion-9
Description: NF4602
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)


[»] NF4602-Insertion-9
NF4602-Insertion-9
[»] chr2 (2 HSPs)
chr2 (99-404)||(37863631-37863936)
chr2 (7-89)||(37864837-37864919)


Alignment Details
Target: chr2 (Bit Score: 255; Significance: 1e-142; HSPs: 2)
Name: chr2
Description:

Target: chr2; HSP #1
Raw Score: 255; E-Value: 1e-142
Query Start/End: Original strand, 99 - 404
Target Start/End: Complemental strand, 37863936 - 37863631
Alignment:
Q  99 gaaaattaggctcgcctccccaaaacaacacaaacaccttctctagttttgtactagacactaacctccactaagttattctataatagacaaacacatc 198  Q
    ||||||||||||||||  ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  37863936 gaaaattaggctcgcccgcccaaaacaacacaaacaccttctctagttttgtactagacactaacctccactaagttattctataatagacaaacacatc 37863837  T
Q  199 ccttaacacaattattattctgttaatttcttttcttccctatttccattttccatcgtttgtgacatggagtttcgcttcagagttgttgcaccttgca 298  Q
    ||||||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  37863836 ccttaacaccattattattctgttaatttcttttcttccctatttccattttccatcgtttgtgacatggagtttcgcttcagagttgttgcaccttgca 37863737  T
Q  299 agtatcacaacgtcaacataaattattattnnnnnnnnnctcacaacaatagtgagtaaattctgaaaattgtaatcagtcttattctttcttcacccac 398  Q
    || |||||||||||||||||||||||||||         ||||||||||||| ||||||||||||||||||||||| |||||||||||||||||||||||    
T  37863736 agaatcacaacgtcaacataaattattattaaaaaaaaactcacaacaatagcgagtaaattctgaaaattgtaattagtcttattctttcttcacccac 37863637  T
Q  399 acccac 404  Q
    ||||||    
T  37863636 acccac 37863631  T

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Target: chr2; HSP #2
Raw Score: 75; E-Value: 2e-34
Query Start/End: Original strand, 7 - 89
Target Start/End: Complemental strand, 37864919 - 37864837
Alignment:
Q  7 agatacgactctgaggtacaaatatttagtaactgaaacatcttaagtaagattaagttcgattgattgaacctatatcaaat 89  Q
    |||||||||||||||||||||||||||||||||||||||||||||| |||||||||||||||||||||||||| |||||||||    
T  37864919 agatacgactctgaggtacaaatatttagtaactgaaacatcttaaataagattaagttcgattgattgaaccgatatcaaat 37864837  T

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