View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF4602_high_1 (Length: 724)
Name: NF4602_high_1
Description: NF4602
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF4602_high_1 |
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| [»] chr5 (2 HSPs) |
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| [»] chr7 (2 HSPs) |
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| [»] chr3 (1 HSPs) |
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Alignment Details
Target: chr5 (Bit Score: 467; Significance: 0; HSPs: 2)
Name: chr5
Description:
Target: chr5; HSP #1
Raw Score: 467; E-Value: 0
Query Start/End: Original strand, 218 - 724
Target Start/End: Complemental strand, 19856544 - 19856038
Alignment:
| Q |
218 |
cagaggaacagacacagtagcaatattactagaatggattttggctagaatggtgcttcatccagagatacaagcaaaagtacaagaagaaatttaccgt |
317 |
Q |
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|||||||||||||||||||||||||||||||||||||||| ||||||| ||||||||||||||||||||||||||||||| ||||||||||||||||||| |
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| T |
19856544 |
cagaggaacagacacagtagcaatattactagaatggattctggctaggatggtgcttcatccagagatacaagcaaaagcacaagaagaaatttaccgt |
19856445 |
T |
|
| Q |
318 |
gttgttggaaattccaaagttatcaatgatgctgatgttcaaaaaatgtgttacttgcaatgcattgtgaaggaagcattaagagtgcatccaccaggac |
417 |
Q |
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||||||||||||||||||||||||| |||||||||||||||||||||||||||||| || |||||||||||||||||||||||||||||||||||||||| |
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| T |
19856444 |
gttgttggaaattccaaagttatcactgatgctgatgttcaaaaaatgtgttacttacagtgcattgtgaaggaagcattaagagtgcatccaccaggac |
19856345 |
T |
|
| Q |
418 |
cacttttatcatgggcacgtttagctgttcatgatgttatggttggtgacaagcatattccgaaaggtacaactgctatggtgaatatgtgggccataac |
517 |
Q |
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|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
19856344 |
cacttttatcatgggcacgtttagctgttcatgatgttatggttggtgacaagcatattccgaaaggtacaactgctatggtgaatatgtgggccataac |
19856245 |
T |
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| Q |
518 |
acatgatgagaaggtgttgaatgaaccagaagagtttaagccagagaggtttatgaatgaggatgtgagtataatgggatctgatttgaggttagcacca |
617 |
Q |
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||||||||||||||||| |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
19856244 |
acatgatgagaaggtgtggaatgaaccagaagagtttaagccagagaggtttatgaatgaggatgtgagtataatgggatctgatttgaggttagcacca |
19856145 |
T |
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| Q |
618 |
tttggagctggtaggagggtttgtcctggaaaagctatgggtttggcttctgttcatctttggttggctcagttacttcacaacttcaaatgggttccat |
717 |
Q |
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| T |
19856144 |
tttggagctggtaggagggtttgtcctggaaaagctatgggtttggcttctgttcatctttggtttgctcagttgcttcacaacttcaaatgggtttcat |
19856045 |
T |
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| Q |
718 |
gtgatga |
724 |
Q |
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||||||| |
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| T |
19856044 |
gtgatga |
19856038 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr5; HSP #2
Raw Score: 105; E-Value: 5e-52
Query Start/End: Original strand, 18 - 122
Target Start/End: Complemental strand, 19856746 - 19856642
Alignment:
| Q |
18 |
aggaagggctatagttggtgattttgttgacgttttgcttgatttggaggaaaaagacaagctcagtgattctgatatgattgcagttctttgggtaata |
117 |
Q |
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| T |
19856746 |
aggaagggctatagttggtgattttgttgacgttttgcttgatttggaggaaaaagacaagctcagtgattctgatatgattgcagttctttgggtaata |
19856647 |
T |
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| Q |
118 |
caata |
122 |
Q |
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||||| |
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| T |
19856646 |
caata |
19856642 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr7 (Bit Score: 202; Significance: 1e-110; HSPs: 2)
Name: chr7
Description:
Target: chr7; HSP #1
Raw Score: 202; E-Value: 1e-110
Query Start/End: Original strand, 438 - 724
Target Start/End: Original strand, 35080901 - 35081188
Alignment:
| Q |
438 |
ttagctgttcatgatgttatggttggtgacaagcatattccgaaaggtacaactgctatggtgaatatgtgggccataacacatgatgagaaggtgttga |
537 |
Q |
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||||||||||||||||||||||| ||||| |||||| |||||||||||||||||||||||||||||||||||| |||||||||||||||||||| | | |
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| T |
35080901 |
ttagctgttcatgatgttatggtaggtgagaagcatgttccgaaaggtacaactgctatggtgaatatgtgggttataacacatgatgagaaggtttgca |
35081000 |
T |
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| Q |
538 |
atgaaccagaagagtttaa--gccagagaggtttatgaatgaggatgtgagtataatgggatctgatttgaggttagcaccatttggagctggtaggagg |
635 |
Q |
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|||| || |||||||||| || ||||||||||||||||||||| ||||||||||||||||||||||||| |||||||| ||||||||||||||||||| |
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| T |
35081001 |
atgaggcaaaagagtttaaaagcgagagaggtttatgaatgaggaagtgagtataatgggatctgatttgacgttagcac-atttggagctggtaggagg |
35081099 |
T |
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| Q |
636 |
gtttgtcctggaaaagctatgggtttggcttctgttcatctttggttggctcagttacttcacaacttcaaatgggttccatgtgatga |
724 |
Q |
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| T |
35081100 |
gtttgtcctggaaaagctatggatttggcttctgttcatctttggcttgctcagttacttcacaacttcaaatgggttccatgtgatga |
35081188 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr7; HSP #2
Raw Score: 97; E-Value: 3e-47
Query Start/End: Original strand, 435 - 592
Target Start/End: Complemental strand, 39428039 - 39427880
Alignment:
| Q |
435 |
cgtttagctgttcatgatgttatggttggtgacaagcatattccgaaaggtacaactgctatggtgaatatgtgggccataacacatgatgagaaggtgt |
534 |
Q |
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||||||| |||||||||||||||||| ||||| |||||| ||||||||||||||||||||||||||||||| ||||| |||||||||||||||||||| | |
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| T |
39428039 |
cgtttagttgttcatgatgttatggtaggtgagaagcatgttccgaaaggtacaactgctatggtgaatatatgggctataacacatgatgagaaggttt |
39427940 |
T |
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| Q |
535 |
tgaatgaaccagaagagttt--aagccagagaggtttatgaatgaggatgtgagtataat |
592 |
Q |
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| T |
39427939 |
gcaatgaggcaaaagagtttaaaagccagagaggtttatgaatgaggaagtgagtataat |
39427880 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3 (Bit Score: 199; Significance: 1e-108; HSPs: 1)
Name: chr3
Description:
Target: chr3; HSP #1
Raw Score: 199; E-Value: 1e-108
Query Start/End: Original strand, 437 - 724
Target Start/End: Complemental strand, 32830523 - 32830234
Alignment:
| Q |
437 |
tttagctgttcatgatgttatggttggtgacaagcatattccgaaaggtacaactgctatggtgaatatgtgggccataacacatgatgagaaggtgttg |
536 |
Q |
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|||||||||||||||||||||||| ||||| |||||| |||||||||||||||||| |||||||||||||||||| |||||||||||||||||||| | |
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| T |
32830523 |
tttagctgttcatgatgttatggtaggtgagaagcatgttccgaaaggtacaactggtatggtgaatatgtgggctataacacatgatgagaaggtttac |
32830424 |
T |
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| Q |
537 |
aatgaaccagaagagtttaa--gccagagaggtttatgaatgaggatgtgagtataatgggatctgatttgaggttagcaccatttggagctggtaggag |
634 |
Q |
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| T |
32830423 |
aatgaggcaaaagagtttaaaagccagagaggtttatgaatgaggaagtgagtacaatgggatatgatttgacgttagcaccatttggagctggtaggag |
32830324 |
T |
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| Q |
635 |
ggtttgtcctggaaaagctatgggtttggcttctgttcatctttggttggctcagttacttcacaacttcaaatgggttccatgtgatga |
724 |
Q |
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||||||||||||||||||||||| |||||||| ||||||||||||| | |||||||||||||||||||||||||||||||||| |||||| |
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| T |
32830323 |
ggtttgtcctggaaaagctatggatttggcttttgttcatctttggcttgctcagttacttcacaacttcaaatgggttccatttgatga |
32830234 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4 (Bit Score: 195; Significance: 1e-106; HSPs: 1)
Name: chr4
Description:
Target: chr4; HSP #1
Raw Score: 195; E-Value: 1e-106
Query Start/End: Original strand, 438 - 717
Target Start/End: Original strand, 8748312 - 8748592
Alignment:
| Q |
438 |
ttagctgttcatgatgttatggttggtgacaagcatattccgaaaggtacaactgctatggtgaatatgtgggccataacacatgatgagaaggtgttga |
537 |
Q |
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||||||||||||||||||||||| ||||| |||||| |||||||||||||||||||||||||||||||||||| |||||||||||||||||||| | | |
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| T |
8748312 |
ttagctgttcatgatgttatggtaggtgagaagcatgttccgaaaggtacaactgctatggtgaatatgtgggttataacacatgatgagaaggtttgca |
8748411 |
T |
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| Q |
538 |
atgaaccagaagagtttaa--gccagagaggtttatgaatgaggatgtgagtataatgggatctgatttgaggttagcaccatttggagctggtaggagg |
635 |
Q |
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|||| || |||||||||| |||||||||||||||||||||||| ||||||||||||||||||||||||| |||||||| ||||||||||||||||||| |
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| T |
8748412 |
atgaggcaaaagagtttaaaagccagagaggtttatgaatgaggaagtgagtataatgggatctgatttgacgttagcac-atttggagctggtaggagg |
8748510 |
T |
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| Q |
636 |
gtttgtcctggaaaagctatgggtttggcttctgttcatctttggttggctcagttacttcacaacttcaaatgggttccat |
717 |
Q |
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|||||||||||||||||||||| |||||||||||||||||||||| | ||| |||||||||||||||||||||||||||||| |
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| T |
8748511 |
gtttgtcctggaaaagctatggatttggcttctgttcatctttggcttgcttagttacttcacaacttcaaatgggttccat |
8748592 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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