View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF4602_high_12 (Length: 339)
Name: NF4602_high_12
Description: NF4602
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF4602_high_12 |
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Alignment Details
Target: chr1 (Bit Score: 212; Significance: 1e-116; HSPs: 2)
Name: chr1
Description:
Target: chr1; HSP #1
Raw Score: 212; E-Value: 1e-116
Query Start/End: Original strand, 114 - 329
Target Start/End: Complemental strand, 29317245 - 29317030
Alignment:
| Q |
114 |
ttaatttgttattctttctttgtgctcagacttgagaagataaagataaaaagtatgcgaagtcaagcaaaggtgttgggaactatagcaactgtttcag |
213 |
Q |
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| T |
29317245 |
ttaatttgttattctttctttgtgctcagacttgagaagataaagataaaaagtatgcgaagtcaagcaaaggtgttgggaactatagcaactgtttcag |
29317146 |
T |
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| Q |
214 |
gtgcaatggtgatgacattgatgaaaggtccaatactttttgagacatttggagatcatagccaaagctatcatagcagtggcacaagtgctcatcatac |
313 |
Q |
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| T |
29317145 |
gtgcaatggtgatgacactgatgaaaggtccaatactttttgagacatttggagatcatagccaaagctatcatagcagtggcacaagtgctcatcatac |
29317046 |
T |
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| Q |
314 |
aatacttggatctgtg |
329 |
Q |
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| T |
29317045 |
aatacttggatctgtg |
29317030 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr1; HSP #2
Raw Score: 111; E-Value: 5e-56
Query Start/End: Original strand, 1 - 118
Target Start/End: Complemental strand, 29317419 - 29317301
Alignment:
| Q |
1 |
tacattgatgccgtacatattttgaataaaaa-ttgtacttgtaaaaaatagatatcctagcaagtacatttctaattaaacatgataacatatgttatt |
99 |
Q |
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|||||||||||||||||||||||||||||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
29317419 |
tacattgatgccgtacatattttgaataaaaaattgtacttgtaaaaaatagatatcctagcaagtacatttctaattaaacatgataacatatgttatt |
29317320 |
T |
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| Q |
100 |
atttttatcacgtgttaat |
118 |
Q |
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| T |
29317319 |
atttttatcacgtgttaat |
29317301 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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