View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF4602_high_16 (Length: 308)
Name: NF4602_high_16
Description: NF4602
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF4602_high_16 |
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Alignment Details
Target: chr3 (Bit Score: 191; Significance: 1e-104; HSPs: 1)
Name: chr3
Description:
Target: chr3; HSP #1
Raw Score: 191; E-Value: 1e-104
Query Start/End: Original strand, 33 - 290
Target Start/End: Original strand, 38819900 - 38820158
Alignment:
| Q |
33 |
ttaaacattcttctgaaatatatttaatacaaatattttttccaaaggtttaagggcacacgaataaaaaactaactgtcaccaccacgaacctcacacc |
132 |
Q |
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| T |
38819900 |
ttaaacattattctgaaatatatttaatacaaatattttttccaaaggtttaagggcacacgaataaaaaactaactgtcaccaccacggacctcacacc |
38819999 |
T |
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| Q |
133 |
ctcgtttatatataactcctgaaagtaaattccttatagagtaaattcatcccctacgtnnnnnnnnnnnntgttatagctgaatatccaattgtttgtc |
232 |
Q |
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| T |
38820000 |
ctcgtttaaatataactcccgaaagtaaattccttatagagtaaattcattccctacgtaaaaacaaaaaatgttatagccgaatatccaattgtttgtc |
38820099 |
T |
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| Q |
233 |
acatgaatgcgcatacatgttaa-aagaggtagatttttataccaagcaccaacaaaag |
290 |
Q |
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| T |
38820100 |
acatgaatgcgcatacatgttaacaagaggtagatttttataccaagcaccaacaaaag |
38820158 |
T |
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