View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
|
Alignment Overview
Query: NF4602_high_17 (Length: 303)
Name: NF4602_high_17
Description: NF4602
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF4602_high_17 |
 | |
|
Alignment Details
Target: chr8 (Bit Score: 260; Significance: 1e-145; HSPs: 1)
Name: chr8
Description:
Target: chr8; HSP #1
Raw Score: 260; E-Value: 1e-145
Query Start/End: Original strand, 1 - 288
Target Start/End: Complemental strand, 42791935 - 42791648
Alignment:
| Q |
1 |
gacttgcatcattcataagtttactggtagacaactttttattagattttatttatcttttgactgaacttcggactatcatgactatttctttaaaaat |
100 |
Q |
| |
|
||||||||||||||||||||||| ||||||| |||||||||||||||||||||||||||||||| ||||||||||||||||| ||||||| ||||||||| |
|
|
| T |
42791935 |
gacttgcatcattcataagtttagtggtagataactttttattagattttatttatcttttgaccgaacttcggactatcataactatttttttaaaaat |
42791836 |
T |
|
| Q |
101 |
tgaaggttaatttacattgattgatcaataaataatatcattagattaaacgagatataatgtaacctattgatggaatgattaaaaacgcatttgtcaa |
200 |
Q |
| |
|
|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
42791835 |
tgaaggttaatttacattgattgatcaataaataatatcattagattaaacgagatataatgtaacctattgatggaatgattaaaaacgcatttgtcaa |
42791736 |
T |
|
| Q |
201 |
gaccttgtaattgtacatattacataaaacttccttgtaatgtgatacattttgttctcttatattcgaatgtttgttgtcttcgaat |
288 |
Q |
| |
|
||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
42791735 |
caccttataattgtacatattacataaaacttccttgtaatgtgatacattttgttctcttatattcgaatgtttgttgtcttcgaat |
42791648 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
© Oklahoma State University