View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF4602_high_20 (Length: 248)
Name: NF4602_high_20
Description: NF4602
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF4602_high_20 |
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Alignment Details
Target: chr2 (Bit Score: 166; Significance: 6e-89; HSPs: 2)
Name: chr2
Description:
Target: chr2; HSP #1
Raw Score: 166; E-Value: 6e-89
Query Start/End: Original strand, 23 - 232
Target Start/End: Original strand, 11664500 - 11664712
Alignment:
| Q |
23 |
tgcacaagtggaattgatggagaaggagttgtctgcaaaagataattttattgtcctaaagagcacgcaaatgatacttcaatatgaaaatatttataat |
122 |
Q |
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| T |
11664500 |
tgcacaagtggaattgatggagaaggagttgtctgcaaaagataattttattgtcctaaagagcacgcaaatgatacttcaatatgaaaaaatttataat |
11664599 |
T |
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| Q |
123 |
tttattgataagaataaag---tatcaaatcatcaaataaattgaatgattttggtttaaccttaaaaaattgtgtaccatgtctctttannnnnnnctt |
219 |
Q |
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||||||||||||||||||| |||||||||||||||||||| |||||||||||||||||||||||||||||||||| |||||||||||| ||| |
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| T |
11664600 |
tttattgataagaataaagtaatatcaaatcatcaaataaatggaatgattttggtttaaccttaaaaaattgtgtatcatgtctctttatttttttctt |
11664699 |
T |
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| Q |
220 |
gttatgtattcat |
232 |
Q |
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||||||||||||| |
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| T |
11664700 |
gttatgtattcat |
11664712 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr2; HSP #2
Raw Score: 109; E-Value: 6e-55
Query Start/End: Original strand, 22 - 208
Target Start/End: Complemental strand, 7343997 - 7343811
Alignment:
| Q |
22 |
atgcacaagtggaattgatggagaaggagttgtctgcaaaagataattttattgtcctaaagagcacgcaaatgatacttca-atatgaaaatatttata |
120 |
Q |
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||||||||||||||||||||||||||||||||||||||||||||||||| ||||||| |||||| | || |||||||||| ||| ||||| ||| ||| |
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| T |
7343997 |
atgcacaagtggaattgatggagaaggagttgtctgcaaaagataatttcattgtccaaaagaggatgctgatgatacttcccata-gaaaaaatt-ata |
7343900 |
T |
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| Q |
121 |
attttattgataagaataaagtatcaaatcatcaaataaattgaatgattttggtttaaccttaaaaaattgtgta-ccatgtctcttt |
208 |
Q |
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|||||||| |||||||||||||||||||||||||||||| ||||||||||||||||||||||||||||| |||||| ||||||||||| |
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| T |
7343899 |
attttattaataagaataaagtatcaaatcatcaaataacttgaatgattttggtttaaccttaaaaaaatgtgtattcatgtctcttt |
7343811 |
T |
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