View Alignment

This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.

Legend
 Query
 Query hiting target  Query hiting target's complemental strand
 Query's complemental strand hiting target  Query's complemental strand hiting target's complemental strand

Alignment Overview

Query: NF4602_high_22 (Length: 238)

Name: NF4602_high_22
Description: NF4602
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)


[»] NF4602_high_22
NF4602_high_22
[»] chr8 (10 HSPs)
chr8 (61-238)||(42791944-42792122)
chr8 (1-60)||(10678181-10678240)
chr8 (5-62)||(9241562-9241619)
chr8 (21-60)||(19386631-19386670)
chr8 (21-60)||(35181516-35181555)
chr8 (1-30)||(11582808-11582837)
chr8 (1-30)||(26125677-26125706)
chr8 (1-30)||(30660771-30660800)
chr8 (1-30)||(36743512-36743541)
chr8 (25-61)||(28977145-28977181)
[»] chr2 (13 HSPs)
chr2 (4-61)||(42849890-42849947)
chr2 (21-60)||(966895-966934)
chr2 (21-60)||(16803968-16804007)
chr2 (21-60)||(16843250-16843289)
chr2 (21-60)||(18491705-18491744)
chr2 (21-60)||(43114557-43114596)
chr2 (24-61)||(1750413-1750450)
chr2 (21-58)||(11825715-11825752)
chr2 (24-61)||(16096746-16096783)
chr2 (1-30)||(19047199-19047228)
chr2 (21-58)||(41282035-41282072)
chr2 (25-61)||(12415525-12415561)
chr2 (25-61)||(12427585-12427621)
[»] chr4 (8 HSPs)
chr4 (4-61)||(36004148-36004205)
chr4 (21-60)||(711960-711999)
chr4 (25-60)||(28988473-28988508)
chr4 (21-58)||(3756307-3756344)
chr4 (1-30)||(25051735-25051764)
chr4 (1-62)||(51512294-51512355)
chr4 (24-60)||(1771330-1771366)
chr4 (21-61)||(17619213-17619253)
[»] chr1 (10 HSPs)
chr1 (1-61)||(4888054-4888114)
chr1 (21-62)||(35003292-35003333)
chr1 (21-61)||(48119627-48119667)
chr1 (21-60)||(14427347-14427386)
chr1 (21-60)||(44112677-44112716)
chr1 (21-60)||(45427806-45427845)
chr1 (1-30)||(5489818-5489847)
chr1 (23-60)||(41065153-41065190)
chr1 (25-62)||(43571151-43571188)
chr1 (25-61)||(38335917-38335953)
[»] chr3 (11 HSPs)
chr3 (24-61)||(36150129-36150166)
chr3 (5-61)||(52629839-52629895)
chr3 (21-60)||(4190326-4190365)
chr3 (1-30)||(24688431-24688460)
chr3 (1-30)||(42394448-42394477)
chr3 (1-30)||(54237138-54237167)
chr3 (5-60)||(19148793-19148846)
chr3 (24-60)||(25413681-25413717)
chr3 (25-61)||(34791828-34791864)
chr3 (25-61)||(42100687-42100723)
chr3 (24-60)||(54246212-54246248)
[»] chr7 (6 HSPs)
chr7 (24-60)||(41861674-41861710)
chr7 (21-60)||(24280657-24280696)
chr7 (1-30)||(24001041-24001070)
chr7 (21-62)||(31513285-31513326)
chr7 (1-30)||(42538460-42538489)
chr7 (25-65)||(43317438-43317478)
[»] chr5 (6 HSPs)
chr5 (25-60)||(41334728-41334763)
chr5 (26-60)||(7617133-7617167)
chr5 (1-31)||(41334692-41334722)
chr5 (1-30)||(2614678-2614707)
chr5 (25-62)||(32473459-32473496)
chr5 (24-60)||(33855107-33855143)
[»] scaffold0003 (1 HSPs)
scaffold0003 (21-63)||(45780-45822)
[»] chr6 (4 HSPs)
chr6 (1-31)||(7292788-7292818)
chr6 (21-63)||(27441539-27441581)
chr6 (1-30)||(9698362-9698391)
chr6 (27-63)||(30014340-30014376)
[»] scaffold0038 (1 HSPs)
scaffold0038 (1-30)||(112697-112726)


Alignment Details
Target: chr8 (Bit Score: 93; Significance: 2e-45; HSPs: 10)
Name: chr8
Description:

Target: chr8; HSP #1
Raw Score: 93; E-Value: 2e-45
Query Start/End: Original strand, 61 - 238
Target Start/End: Complemental strand, 42792122 - 42791944
Alignment:
Q  61 aatttaatttgctgcatatattattgcctggttttgtttggataaaagtaaatataaactgaaatgttgtgcttgtgctccgtgcggtagacaannnnnn 160  Q
    |||||||||||||| ||||||||||||||||| |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||          
T  42792122 aatttaatttgctgtatatattattgcctggtcttgtttggataaaagtaaatataaactgaaatgttgtgcttgtgctccgtgcggtagacaatttttt 42792023  T
Q  161 nctnnnnnnncacataatacaac-annnnnnnnacgctaatactttatacaacttgatgactaattttataaatagatg 238  Q
     ||       |||||||||||||          ||||||||||||||||||||||||||||||||||||||||||||||    
T  42792022 tctaaaaaaacacataatacaacttttttttttacgctaatactttatacaacttgatgactaattttataaatagatg 42791944  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #2
Raw Score: 40; E-Value: 0.00000000000009
Query Start/End: Original strand, 1 - 60
Target Start/End: Original strand, 10678181 - 10678240
Alignment:
Q  1 taccaaaatatccctaatacatagggtgtatgaataaagggtattcatgtaacattttcc 60  Q
    ||||||||| ||| ||||| || |||||||||| ||||||||||||||||||||||||||    
T  10678181 taccaaaatgtccttaatatatggggtgtatgattaaagggtattcatgtaacattttcc 10678240  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #3
Raw Score: 38; E-Value: 0.000000000001
Query Start/End: Original strand, 5 - 62
Target Start/End: Complemental strand, 9241619 - 9241562
Alignment:
Q  5 aaaatatccctaatacatagggtgtatgaataaagggtattcatgtaacattttccaa 62  Q
    ||||||||||||||| |||||||||| |||||||||   |||||||||||||||||||    
T  9241619 aaaatatccctaatatatagggtgtaggaataaaggaggttcatgtaacattttccaa 9241562  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #4
Raw Score: 32; E-Value: 0.000000005
Query Start/End: Original strand, 21 - 60
Target Start/End: Original strand, 19386631 - 19386670
Alignment:
Q  21 atagggtgtatgaataaagggtattcatgtaacattttcc 60  Q
    ||||||||||||| |||||||| |||||||||||||||||    
T  19386631 atagggtgtatgattaaagggtgttcatgtaacattttcc 19386670  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #5
Raw Score: 32; E-Value: 0.000000005
Query Start/End: Original strand, 21 - 60
Target Start/End: Complemental strand, 35181555 - 35181516
Alignment:
Q  21 atagggtgtatgaataaagggtattcatgtaacattttcc 60  Q
    ||||||||||||| |||||||| |||||||||||||||||    
T  35181555 atagggtgtatgattaaagggtgttcatgtaacattttcc 35181516  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #6
Raw Score: 30; E-Value: 0.00000008
Query Start/End: Original strand, 1 - 30
Target Start/End: Complemental strand, 11582837 - 11582808
Alignment:
Q  1 taccaaaatatccctaatacatagggtgta 30  Q
    ||||||||||||||||||||||||||||||    
T  11582837 taccaaaatatccctaatacatagggtgta 11582808  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #7
Raw Score: 30; E-Value: 0.00000008
Query Start/End: Original strand, 1 - 30
Target Start/End: Complemental strand, 26125706 - 26125677
Alignment:
Q  1 taccaaaatatccctaatacatagggtgta 30  Q
    ||||||||||||||||||||||||||||||    
T  26125706 taccaaaatatccctaatacatagggtgta 26125677  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #8
Raw Score: 30; E-Value: 0.00000008
Query Start/End: Original strand, 1 - 30
Target Start/End: Original strand, 30660771 - 30660800
Alignment:
Q  1 taccaaaatatccctaatacatagggtgta 30  Q
    ||||||||||||||||||||||||||||||    
T  30660771 taccaaaatatccctaatacatagggtgta 30660800  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #9
Raw Score: 30; E-Value: 0.00000008
Query Start/End: Original strand, 1 - 30
Target Start/End: Original strand, 36743512 - 36743541
Alignment:
Q  1 taccaaaatatccctaatacatagggtgta 30  Q
    ||||||||||||||||||||||||||||||    
T  36743512 taccaaaatatccctaatacatagggtgta 36743541  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #10
Raw Score: 29; E-Value: 0.0000003
Query Start/End: Original strand, 25 - 61
Target Start/End: Complemental strand, 28977181 - 28977145
Alignment:
Q  25 ggtgtatgaataaagggtattcatgtaacattttcca 61  Q
    |||||| ||||||||||| ||||||||||||||||||    
T  28977181 ggtgtaggaataaagggtgttcatgtaacattttcca 28977145  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2 (Bit Score: 46; Significance: 2e-17; HSPs: 13)
Name: chr2
Description:

Target: chr2; HSP #1
Raw Score: 46; E-Value: 2e-17
Query Start/End: Original strand, 4 - 61
Target Start/End: Original strand, 42849890 - 42849947
Alignment:
Q  4 caaaatatccctaatacatagggtgtatgaataaagggtattcatgtaacattttcca 61  Q
    ||||||||||||||||||| ||||||| ||||||||||| ||||||||||||||||||    
T  42849890 caaaatatccctaatacatggggtgtaggaataaagggtgttcatgtaacattttcca 42849947  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #2
Raw Score: 32; E-Value: 0.000000005
Query Start/End: Original strand, 21 - 60
Target Start/End: Original strand, 966895 - 966934
Alignment:
Q  21 atagggtgtatgaataaagggtattcatgtaacattttcc 60  Q
    ||||||||||||| |||||||| |||||||||||||||||    
T  966895 atagggtgtatgattaaagggtgttcatgtaacattttcc 966934  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #3
Raw Score: 32; E-Value: 0.000000005
Query Start/End: Original strand, 21 - 60
Target Start/End: Complemental strand, 16804007 - 16803968
Alignment:
Q  21 atagggtgtatgaataaagggtattcatgtaacattttcc 60  Q
    ||||||||||||| |||||||| |||||||||||||||||    
T  16804007 atagggtgtatgattaaagggtgttcatgtaacattttcc 16803968  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #4
Raw Score: 32; E-Value: 0.000000005
Query Start/End: Original strand, 21 - 60
Target Start/End: Complemental strand, 16843289 - 16843250
Alignment:
Q  21 atagggtgtatgaataaagggtattcatgtaacattttcc 60  Q
    ||||||||||||| |||||||| |||||||||||||||||    
T  16843289 atagggtgtatgattaaagggtgttcatgtaacattttcc 16843250  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #5
Raw Score: 32; E-Value: 0.000000005
Query Start/End: Original strand, 21 - 60
Target Start/End: Complemental strand, 18491744 - 18491705
Alignment:
Q  21 atagggtgtatgaataaagggtattcatgtaacattttcc 60  Q
    ||||||||||||| |||||||| |||||||||||||||||    
T  18491744 atagggtgtatgattaaagggtgttcatgtaacattttcc 18491705  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #6
Raw Score: 32; E-Value: 0.000000005
Query Start/End: Original strand, 21 - 60
Target Start/End: Complemental strand, 43114596 - 43114557
Alignment:
Q  21 atagggtgtatgaataaagggtattcatgtaacattttcc 60  Q
    ||||||||||||| |||||||| |||||||||||||||||    
T  43114596 atagggtgtatgattaaagggtgttcatgtaacattttcc 43114557  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #7
Raw Score: 30; E-Value: 0.00000008
Query Start/End: Original strand, 24 - 61
Target Start/End: Complemental strand, 1750450 - 1750413
Alignment:
Q  24 gggtgtatgaataaagggtattcatgtaacattttcca 61  Q
    ||||||| ||||||||||| ||||||||||||||||||    
T  1750450 gggtgtaggaataaagggtgttcatgtaacattttcca 1750413  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #8
Raw Score: 30; E-Value: 0.00000008
Query Start/End: Original strand, 21 - 58
Target Start/End: Original strand, 11825715 - 11825752
Alignment:
Q  21 atagggtgtatgaataaagggtattcatgtaacatttt 58  Q
    ||||||||||||| |||||||| |||||||||||||||    
T  11825715 atagggtgtatgattaaagggtgttcatgtaacatttt 11825752  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #9
Raw Score: 30; E-Value: 0.00000008
Query Start/End: Original strand, 24 - 61
Target Start/End: Complemental strand, 16096783 - 16096746
Alignment:
Q  24 gggtgtatgaataaagggtattcatgtaacattttcca 61  Q
    ||||||| ||||||||||| ||||||||||||||||||    
T  16096783 gggtgtaggaataaagggtgttcatgtaacattttcca 16096746  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #10
Raw Score: 30; E-Value: 0.00000008
Query Start/End: Original strand, 1 - 30
Target Start/End: Complemental strand, 19047228 - 19047199
Alignment:
Q  1 taccaaaatatccctaatacatagggtgta 30  Q
    ||||||||||||||||||||||||||||||    
T  19047228 taccaaaatatccctaatacatagggtgta 19047199  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #11
Raw Score: 30; E-Value: 0.00000008
Query Start/End: Original strand, 21 - 58
Target Start/End: Original strand, 41282035 - 41282072
Alignment:
Q  21 atagggtgtatgaataaagggtattcatgtaacatttt 58  Q
    ||||||||||||| |||||||| |||||||||||||||    
T  41282035 atagggtgtatgattaaagggtgttcatgtaacatttt 41282072  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #12
Raw Score: 29; E-Value: 0.0000003
Query Start/End: Original strand, 25 - 61
Target Start/End: Original strand, 12415525 - 12415561
Alignment:
Q  25 ggtgtatgaataaagggtattcatgtaacattttcca 61  Q
    ||||||||| |||||||| ||||||||||||||||||    
T  12415525 ggtgtatgattaaagggtgttcatgtaacattttcca 12415561  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #13
Raw Score: 29; E-Value: 0.0000003
Query Start/End: Original strand, 25 - 61
Target Start/End: Original strand, 12427585 - 12427621
Alignment:
Q  25 ggtgtatgaataaagggtattcatgtaacattttcca 61  Q
    ||||||||| |||||||| ||||||||||||||||||    
T  12427585 ggtgtatgattaaagggtgttcatgtaacattttcca 12427621  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4 (Bit Score: 42; Significance: 0.000000000000006; HSPs: 8)
Name: chr4
Description:

Target: chr4; HSP #1
Raw Score: 42; E-Value: 0.000000000000006
Query Start/End: Original strand, 4 - 61
Target Start/End: Original strand, 36004148 - 36004205
Alignment:
Q  4 caaaatatccctaatacatagggtgtatgaataaagggtattcatgtaacattttcca 61  Q
    |||||| ||||||||| || |||||||||| |||||||||||||||||||||||||||    
T  36004148 caaaatgtccctaatatatggggtgtatgattaaagggtattcatgtaacattttcca 36004205  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #2
Raw Score: 32; E-Value: 0.000000005
Query Start/End: Original strand, 21 - 60
Target Start/End: Complemental strand, 711999 - 711960
Alignment:
Q  21 atagggtgtatgaataaagggtattcatgtaacattttcc 60  Q
    ||||||||||||| |||||||| |||||||||||||||||    
T  711999 atagggtgtatgattaaagggtgttcatgtaacattttcc 711960  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #3
Raw Score: 32; E-Value: 0.000000005
Query Start/End: Original strand, 25 - 60
Target Start/End: Complemental strand, 28988508 - 28988473
Alignment:
Q  25 ggtgtatgaataaagggtattcatgtaacattttcc 60  Q
    |||||||||||||||||| |||||||||||||||||    
T  28988508 ggtgtatgaataaagggtgttcatgtaacattttcc 28988473  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #4
Raw Score: 30; E-Value: 0.00000008
Query Start/End: Original strand, 21 - 58
Target Start/End: Original strand, 3756307 - 3756344
Alignment:
Q  21 atagggtgtatgaataaagggtattcatgtaacatttt 58  Q
    ||||||||||||| |||||||| |||||||||||||||    
T  3756307 atagggtgtatgattaaagggtgttcatgtaacatttt 3756344  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #5
Raw Score: 30; E-Value: 0.00000008
Query Start/End: Original strand, 1 - 30
Target Start/End: Complemental strand, 25051764 - 25051735
Alignment:
Q  1 taccaaaatatccctaatacatagggtgta 30  Q
    ||||||||||||||||||||||||||||||    
T  25051764 taccaaaatatccctaatacatagggtgta 25051735  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #6
Raw Score: 30; E-Value: 0.00000008
Query Start/End: Original strand, 1 - 62
Target Start/End: Original strand, 51512294 - 51512355
Alignment:
Q  1 taccaaaatatccctaatacatagggtgtatgaataaagggtattcatgtaacattttccaa 62  Q
    |||||||||||| ||||||||| ||||||| ||||||||||| ||| |   |||||||||||    
T  51512294 taccaaaatatctctaatacatggggtgtaggaataaagggtgttcttcatacattttccaa 51512355  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #7
Raw Score: 29; E-Value: 0.0000003
Query Start/End: Original strand, 24 - 60
Target Start/End: Original strand, 1771330 - 1771366
Alignment:
Q  24 gggtgtatgaataaagggtattcatgtaacattttcc 60  Q
    ||||||| ||||||||||| |||||||||||||||||    
T  1771330 gggtgtaggaataaagggtgttcatgtaacattttcc 1771366  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #8
Raw Score: 29; E-Value: 0.0000003
Query Start/End: Original strand, 21 - 61
Target Start/End: Original strand, 17619213 - 17619253
Alignment:
Q  21 atagggtgtatgaataaagggtattcatgtaacattttcca 61  Q
    ||||||||||||| |||| ||| ||||||||||||||||||    
T  17619213 atagggtgtatgattaaaaggtgttcatgtaacattttcca 17619253  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1 (Bit Score: 41; Significance: 0.00000000000002; HSPs: 10)
Name: chr1
Description:

Target: chr1; HSP #1
Raw Score: 41; E-Value: 0.00000000000002
Query Start/End: Original strand, 1 - 61
Target Start/End: Complemental strand, 4888114 - 4888054
Alignment:
Q  1 taccaaaatatccctaatacatagggtgtatgaataaagggtattcatgtaacattttcca 61  Q
    |||||||||||||||||||||| || |||| ||||||||||  ||||||||||||||||||    
T  4888114 taccaaaatatccctaatacatgggatgtaggaataaagggcgttcatgtaacattttcca 4888054  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #2
Raw Score: 34; E-Value: 0.0000000003
Query Start/End: Original strand, 21 - 62
Target Start/End: Complemental strand, 35003333 - 35003292
Alignment:
Q  21 atagggtgtatgaataaagggtattcatgtaacattttccaa 62  Q
    ||||||||||||| |||||||| |||||||||||||||||||    
T  35003333 atagggtgtatgattaaagggtgttcatgtaacattttccaa 35003292  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #3
Raw Score: 33; E-Value: 0.000000001
Query Start/End: Original strand, 21 - 61
Target Start/End: Complemental strand, 48119667 - 48119627
Alignment:
Q  21 atagggtgtatgaataaagggtattcatgtaacattttcca 61  Q
    ||||||||||||| |||||||| ||||||||||||||||||    
T  48119667 atagggtgtatgattaaagggtgttcatgtaacattttcca 48119627  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #4
Raw Score: 32; E-Value: 0.000000005
Query Start/End: Original strand, 21 - 60
Target Start/End: Complemental strand, 14427386 - 14427347
Alignment:
Q  21 atagggtgtatgaataaagggtattcatgtaacattttcc 60  Q
    ||||||||||||| |||||||| |||||||||||||||||    
T  14427386 atagggtgtatgattaaagggtgttcatgtaacattttcc 14427347  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #5
Raw Score: 32; E-Value: 0.000000005
Query Start/End: Original strand, 21 - 60
Target Start/End: Complemental strand, 44112716 - 44112677
Alignment:
Q  21 atagggtgtatgaataaagggtattcatgtaacattttcc 60  Q
    ||||||||||||| |||||||| |||||||||||||||||    
T  44112716 atagggtgtatgattaaagggtgttcatgtaacattttcc 44112677  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #6
Raw Score: 32; E-Value: 0.000000005
Query Start/End: Original strand, 21 - 60
Target Start/End: Original strand, 45427806 - 45427845
Alignment:
Q  21 atagggtgtatgaataaagggtattcatgtaacattttcc 60  Q
    ||||||||||||| |||| |||||||||||||||||||||    
T  45427806 atagggtgtatgattaaaaggtattcatgtaacattttcc 45427845  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #7
Raw Score: 30; E-Value: 0.00000008
Query Start/End: Original strand, 1 - 30
Target Start/End: Complemental strand, 5489847 - 5489818
Alignment:
Q  1 taccaaaatatccctaatacatagggtgta 30  Q
    ||||||||||||||||||||||||||||||    
T  5489847 taccaaaatatccctaatacatagggtgta 5489818  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #8
Raw Score: 30; E-Value: 0.00000008
Query Start/End: Original strand, 23 - 60
Target Start/End: Complemental strand, 41065190 - 41065153
Alignment:
Q  23 agggtgtatgaataaagggtattcatgtaacattttcc 60  Q
    ||||||||||| |||||||| |||||||||||||||||    
T  41065190 agggtgtatgattaaagggtgttcatgtaacattttcc 41065153  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #9
Raw Score: 30; E-Value: 0.00000008
Query Start/End: Original strand, 25 - 62
Target Start/End: Original strand, 43571151 - 43571188
Alignment:
Q  25 ggtgtatgaataaagggtattcatgtaacattttccaa 62  Q
    |||||| ||||||||||| |||||||||||||||||||    
T  43571151 ggtgtaggaataaagggtgttcatgtaacattttccaa 43571188  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #10
Raw Score: 29; E-Value: 0.0000003
Query Start/End: Original strand, 25 - 61
Target Start/End: Complemental strand, 38335953 - 38335917
Alignment:
Q  25 ggtgtatgaataaagggtattcatgtaacattttcca 61  Q
    ||||||||| |||||||| ||||||||||||||||||    
T  38335953 ggtgtatgattaaagggtgttcatgtaacattttcca 38335917  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3 (Bit Score: 38; Significance: 0.000000000001; HSPs: 11)
Name: chr3
Description:

Target: chr3; HSP #1
Raw Score: 38; E-Value: 0.000000000001
Query Start/End: Original strand, 24 - 61
Target Start/End: Complemental strand, 36150166 - 36150129
Alignment:
Q  24 gggtgtatgaataaagggtattcatgtaacattttcca 61  Q
    ||||||||||||||||||||||||||||||||||||||    
T  36150166 gggtgtatgaataaagggtattcatgtaacattttcca 36150129  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #2
Raw Score: 37; E-Value: 0.000000000005
Query Start/End: Original strand, 5 - 61
Target Start/End: Complemental strand, 52629895 - 52629839
Alignment:
Q  5 aaaatatccctaatacatagggtgtatgaataaagggtattcatgtaacattttcca 61  Q
    ||||||||| |||||||||||||||| ||||||| ||| ||||||||| ||||||||    
T  52629895 aaaatatccttaatacatagggtgtaggaataaaaggtgttcatgtaatattttcca 52629839  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #3
Raw Score: 32; E-Value: 0.000000005
Query Start/End: Original strand, 21 - 60
Target Start/End: Original strand, 4190326 - 4190365
Alignment:
Q  21 atagggtgtatgaataaagggtattcatgtaacattttcc 60  Q
    ||||||||||||| |||||||| |||||||||||||||||    
T  4190326 atagggtgtatgattaaagggtgttcatgtaacattttcc 4190365  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #4
Raw Score: 30; E-Value: 0.00000008
Query Start/End: Original strand, 1 - 30
Target Start/End: Original strand, 24688431 - 24688460
Alignment:
Q  1 taccaaaatatccctaatacatagggtgta 30  Q
    ||||||||||||||||||||||||||||||    
T  24688431 taccaaaatatccctaatacatagggtgta 24688460  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #5
Raw Score: 30; E-Value: 0.00000008
Query Start/End: Original strand, 1 - 30
Target Start/End: Original strand, 42394448 - 42394477
Alignment:
Q  1 taccaaaatatccctaatacatagggtgta 30  Q
    ||||||||||||||||||||||||||||||    
T  42394448 taccaaaatatccctaatacatagggtgta 42394477  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #6
Raw Score: 30; E-Value: 0.00000008
Query Start/End: Original strand, 1 - 30
Target Start/End: Complemental strand, 54237167 - 54237138
Alignment:
Q  1 taccaaaatatccctaatacatagggtgta 30  Q
    ||||||||||||||||||||||||||||||    
T  54237167 taccaaaatatccctaatacatagggtgta 54237138  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #7
Raw Score: 29; E-Value: 0.0000003
Query Start/End: Original strand, 5 - 60
Target Start/End: Complemental strand, 19148846 - 19148793
Alignment:
Q  5 aaaatatccctaatacatagggtgtatgaataaagggtattcatgtaacattttcc 60  Q
    ||||| ||||||||||||||||||| ||||||||| |  ||||| |||||||||||    
T  19148846 aaaatgtccctaatacatagggtgtgtgaataaagag--ttcatataacattttcc 19148793  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #8
Raw Score: 29; E-Value: 0.0000003
Query Start/End: Original strand, 24 - 60
Target Start/End: Complemental strand, 25413717 - 25413681
Alignment:
Q  24 gggtgtatgaataaagggtattcatgtaacattttcc 60  Q
    ||||||| ||||||||||| |||||||||||||||||    
T  25413717 gggtgtaggaataaagggtgttcatgtaacattttcc 25413681  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #9
Raw Score: 29; E-Value: 0.0000003
Query Start/End: Original strand, 25 - 61
Target Start/End: Complemental strand, 34791864 - 34791828
Alignment:
Q  25 ggtgtatgaataaagggtattcatgtaacattttcca 61  Q
    ||||||||| |||||||| ||||||||||||||||||    
T  34791864 ggtgtatgattaaagggtgttcatgtaacattttcca 34791828  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #10
Raw Score: 29; E-Value: 0.0000003
Query Start/End: Original strand, 25 - 61
Target Start/End: Complemental strand, 42100723 - 42100687
Alignment:
Q  25 ggtgtatgaataaagggtattcatgtaacattttcca 61  Q
    |||||| ||||||||||| ||||||||||||||||||    
T  42100723 ggtgtaggaataaagggtgttcatgtaacattttcca 42100687  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #11
Raw Score: 29; E-Value: 0.0000003
Query Start/End: Original strand, 24 - 60
Target Start/End: Original strand, 54246212 - 54246248
Alignment:
Q  24 gggtgtatgaataaagggtattcatgtaacattttcc 60  Q
    ||||||| ||||||||||| |||||||||||||||||    
T  54246212 gggtgtaggaataaagggtgttcatgtaacattttcc 54246248  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7 (Bit Score: 33; Significance: 0.000000001; HSPs: 6)
Name: chr7
Description:

Target: chr7; HSP #1
Raw Score: 33; E-Value: 0.000000001
Query Start/End: Original strand, 24 - 60
Target Start/End: Complemental strand, 41861710 - 41861674
Alignment:
Q  24 gggtgtatgaataaagggtattcatgtaacattttcc 60  Q
    ||||||||||||||||||| |||||||||||||||||    
T  41861710 gggtgtatgaataaagggtgttcatgtaacattttcc 41861674  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #2
Raw Score: 32; E-Value: 0.000000005
Query Start/End: Original strand, 21 - 60
Target Start/End: Original strand, 24280657 - 24280696
Alignment:
Q  21 atagggtgtatgaataaagggtattcatgtaacattttcc 60  Q
    |||||||||||||||||||||| |||| ||||||||||||    
T  24280657 atagggtgtatgaataaagggtgttcacgtaacattttcc 24280696  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #3
Raw Score: 30; E-Value: 0.00000008
Query Start/End: Original strand, 1 - 30
Target Start/End: Original strand, 24001041 - 24001070
Alignment:
Q  1 taccaaaatatccctaatacatagggtgta 30  Q
    ||||||||||||||||||||||||||||||    
T  24001041 taccaaaatatccctaatacatagggtgta 24001070  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #4
Raw Score: 30; E-Value: 0.00000008
Query Start/End: Original strand, 21 - 62
Target Start/End: Complemental strand, 31513326 - 31513285
Alignment:
Q  21 atagggtgtatgaataaagggtattcatgtaacattttccaa 62  Q
    ||||||||||||| ||||| || |||||||||||||||||||    
T  31513326 atagggtgtatgattaaagagtgttcatgtaacattttccaa 31513285  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #5
Raw Score: 30; E-Value: 0.00000008
Query Start/End: Original strand, 1 - 30
Target Start/End: Original strand, 42538460 - 42538489
Alignment:
Q  1 taccaaaatatccctaatacatagggtgta 30  Q
    ||||||||||||||||||||||||||||||    
T  42538460 taccaaaatatccctaatacatagggtgta 42538489  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #6
Raw Score: 29; E-Value: 0.0000003
Query Start/End: Original strand, 25 - 65
Target Start/End: Complemental strand, 43317478 - 43317438
Alignment:
Q  25 ggtgtatgaataaagggtattcatgtaacattttccaattt 65  Q
    |||||||||||||| ||| ||||||||||||||||| ||||    
T  43317478 ggtgtatgaataaatggtgttcatgtaacattttcctattt 43317438  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5 (Bit Score: 32; Significance: 0.000000005; HSPs: 6)
Name: chr5
Description:

Target: chr5; HSP #1
Raw Score: 32; E-Value: 0.000000005
Query Start/End: Original strand, 25 - 60
Target Start/End: Original strand, 41334728 - 41334763
Alignment:
Q  25 ggtgtatgaataaagggtattcatgtaacattttcc 60  Q
    |||||||||||||||||| |||||||||||||||||    
T  41334728 ggtgtatgaataaagggtgttcatgtaacattttcc 41334763  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #2
Raw Score: 31; E-Value: 0.00000002
Query Start/End: Original strand, 26 - 60
Target Start/End: Complemental strand, 7617167 - 7617133
Alignment:
Q  26 gtgtatgaataaagggtattcatgtaacattttcc 60  Q
    ||||||||||||||||| |||||||||||||||||    
T  7617167 gtgtatgaataaagggtgttcatgtaacattttcc 7617133  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #3
Raw Score: 31; E-Value: 0.00000002
Query Start/End: Original strand, 1 - 31
Target Start/End: Original strand, 41334692 - 41334722
Alignment:
Q  1 taccaaaatatccctaatacatagggtgtat 31  Q
    |||||||||||||||||||||||||||||||    
T  41334692 taccaaaatatccctaatacatagggtgtat 41334722  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #4
Raw Score: 30; E-Value: 0.00000008
Query Start/End: Original strand, 1 - 30
Target Start/End: Original strand, 2614678 - 2614707
Alignment:
Q  1 taccaaaatatccctaatacatagggtgta 30  Q
    ||||||||||||||||||||||||||||||    
T  2614678 taccaaaatatccctaatacatagggtgta 2614707  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #5
Raw Score: 30; E-Value: 0.00000008
Query Start/End: Original strand, 25 - 62
Target Start/End: Original strand, 32473459 - 32473496
Alignment:
Q  25 ggtgtatgaataaagggtattcatgtaacattttccaa 62  Q
    ||||||||| |||||||| |||||||||||||||||||    
T  32473459 ggtgtatgattaaagggtgttcatgtaacattttccaa 32473496  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #6
Raw Score: 29; E-Value: 0.0000003
Query Start/End: Original strand, 24 - 60
Target Start/End: Original strand, 33855107 - 33855143
Alignment:
Q  24 gggtgtatgaataaagggtattcatgtaacattttcc 60  Q
    ||||||| ||||||||||| |||||||||||||||||    
T  33855107 gggtgtaggaataaagggtgttcatgtaacattttcc 33855143  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: scaffold0003 (Bit Score: 31; Significance: 0.00000002; HSPs: 1)
Name: scaffold0003
Description:

Target: scaffold0003; HSP #1
Raw Score: 31; E-Value: 0.00000002
Query Start/End: Original strand, 21 - 63
Target Start/End: Original strand, 45780 - 45822
Alignment:
Q  21 atagggtgtatgaataaagggtattcatgtaacattttccaat 63  Q
    ||||||||||||| |||||||| ||||||||||||||| ||||    
T  45780 atagggtgtatgattaaagggtgttcatgtaacatttttcaat 45822  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6 (Bit Score: 31; Significance: 0.00000002; HSPs: 4)
Name: chr6
Description:

Target: chr6; HSP #1
Raw Score: 31; E-Value: 0.00000002
Query Start/End: Original strand, 1 - 31
Target Start/End: Complemental strand, 7292818 - 7292788
Alignment:
Q  1 taccaaaatatccctaatacatagggtgtat 31  Q
    |||||||||||||||||||||||||||||||    
T  7292818 taccaaaatatccctaatacatagggtgtat 7292788  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #2
Raw Score: 31; E-Value: 0.00000002
Query Start/End: Original strand, 21 - 63
Target Start/End: Complemental strand, 27441581 - 27441539
Alignment:
Q  21 atagggtgtatgaataaagggtattcatgtaacattttccaat 63  Q
    ||||||||||||| |||||||| ||||||||||||||| ||||    
T  27441581 atagggtgtatgattaaagggtgttcatgtaacatttttcaat 27441539  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #3
Raw Score: 30; E-Value: 0.00000008
Query Start/End: Original strand, 1 - 30
Target Start/End: Original strand, 9698362 - 9698391
Alignment:
Q  1 taccaaaatatccctaatacatagggtgta 30  Q
    ||||||||||||||||||||||||||||||    
T  9698362 taccaaaatatccctaatacatagggtgta 9698391  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #4
Raw Score: 29; E-Value: 0.0000003
Query Start/End: Original strand, 27 - 63
Target Start/End: Complemental strand, 30014376 - 30014340
Alignment:
Q  27 tgtatgaataaagggtattcatgtaacattttccaat 63  Q
    |||| ||||||||||| ||||||||||||||||||||    
T  30014376 tgtaggaataaagggtgttcatgtaacattttccaat 30014340  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: scaffold0038 (Bit Score: 30; Significance: 0.00000008; HSPs: 1)
Name: scaffold0038
Description:

Target: scaffold0038; HSP #1
Raw Score: 30; E-Value: 0.00000008
Query Start/End: Original strand, 1 - 30
Target Start/End: Complemental strand, 112726 - 112697
Alignment:
Q  1 taccaaaatatccctaatacatagggtgta 30  Q
    ||||||||||||||||||||||||||||||    
T  112726 taccaaaatatccctaatacatagggtgta 112697  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]



© Oklahoma State University